Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00992

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,071,640	+		CCNA_00990	0.12	-1.5
1,071,648	-		CCNA_00990	0.14	-1.0
1,071,658	+		CCNA_00990	0.16	-1.0
1,071,663	+		CCNA_00990	0.17	-1.1
1,071,684	-		CCNA_00990	0.22	-1.3
1,071,741	+		CCNA_00990	0.34	+0.1
1,071,743	-		CCNA_00990	0.34	-1.0
1,071,760	+		CCNA_00990	0.38	+0.6
1,071,762	-		CCNA_00990	0.38	+0.2
1,071,767	-		CCNA_00990	0.39	+0.2
1,071,774	-		CCNA_00990	0.41	-1.3
1,071,774	-		CCNA_00990	0.41	-0.6
1,071,851	+		CCNA_00990	0.57	-0.2
1,071,880	+		CCNA_00990	0.63	-1.6
1,071,885	+		CCNA_00990	0.64	-0.5
1,071,885	+		CCNA_00990	0.64	+1.0
1,071,888	-		CCNA_00990	0.65	-1.1
1,071,890	+		CCNA_00990	0.65	-0.1
1,071,893	-		CCNA_00990	0.66	-0.8
1,071,931	+		CCNA_00990	0.74	+0.4
1,071,935	-		CCNA_00990	0.75	-1.1
1,071,935	-		CCNA_00990	0.75	+0.4
1,071,958	+		CCNA_00990	0.80	+0.3
1,072,001	-		CCNA_00990	0.89	+1.0
1,072,002	-		CCNA_00990	0.89	+1.6
1,072,019	+				+1.3
1,072,025	+				+0.5
1,072,025	+				-0.8
1,072,029	+				-0.5
1,072,043	-				+1.0
1,072,069	-				-0.8
1,072,069	-				+1.8
1,072,069	-				-1.1
1,072,069	-				+0.4
1,072,069	-				+2.6
1,072,069	-				-0.3
1,072,069	-				-1.3
1,072,092	-				+4.7
1,072,107	+				-0.9
1,072,107	+				+0.3
1,072,115	-				+0.1
1,072,115	-				+0.5
1,072,125	-				+1.5
1,072,125	-				-0.0
1,072,125	-				+0.1
1,072,143	-				+2.0
1,072,143	-				+1.5
1,072,150	+				+0.2
1,072,158	-				-0.4
1,072,198	-		CCNA_00991	0.19	+0.8
1,072,226	-		CCNA_00991	0.25	-0.4
1,072,267	+		CCNA_00991	0.34	-0.3
1,072,267	+		CCNA_00991	0.34	+0.4
1,072,275	-		CCNA_00991	0.36	-0.1
1,072,275	-		CCNA_00991	0.36	+0.0
1,072,275	-		CCNA_00991	0.36	+0.8
1,072,287	-		CCNA_00991	0.39	+1.3
1,072,310	-		CCNA_00991	0.44	+0.5
1,072,315	+		CCNA_00991	0.45	+0.9
1,072,322	+		CCNA_00991	0.47	+0.2
1,072,329	+		CCNA_00991	0.48	-0.1
1,072,337	-		CCNA_00991	0.50	+1.2
1,072,341	-		CCNA_00991	0.51	-0.6
1,072,369	+		CCNA_00991	0.57	-0.4
1,072,376	-		CCNA_00991	0.59	-1.0
1,072,376	-		CCNA_00991	0.59	-0.2
1,072,377	-		CCNA_00991	0.59	-0.5
1,072,381	-		CCNA_00991	0.60	+1.2
1,072,417	+		CCNA_00991	0.68	+0.8
1,072,467	+		CCNA_00991	0.79	-0.1
1,072,475	-		CCNA_00991	0.81	-0.7
1,072,477	+		CCNA_00991	0.81	-0.5
1,072,477	+		CCNA_00991	0.81	-0.3
1,072,540	+				-0.2
1,072,554	-				+2.8
1,072,631	+				-0.6
1,072,650	+				-0.2
1,072,658	-				-2.0
1,072,668	-				+2.6
1,072,671	-				+1.0
1,072,676	+				+0.1
1,072,676	+				+0.3
1,072,676	+				-0.5
1,072,684	-				+3.5
1,072,689	+				+0.2
1,072,697	-				+3.3
1,072,697	-				+3.0
1,072,697	-				+3.5
1,072,699	+				+0.1
1,072,707	-				+3.2
1,072,726	-				+3.7
1,072,727	-		CCNA_00992	0.10	+2.8
1,072,735	+				+2.6
1,072,737	+		CCNA_00992	0.11	+1.6
1,072,743	-		CCNA_00992	0.12	+3.4
1,072,769	-		CCNA_00992	0.14	+2.9
1,072,773	+		CCNA_00992	0.15	+0.7
1,072,783	+		CCNA_00992	0.16	-1.7
1,072,801	+		CCNA_00992	0.17	+0.8
1,072,824	-		CCNA_00992	0.20	+3.2
1,072,824	-		CCNA_00992	0.20	+2.9
1,072,824	-		CCNA_00992	0.20	+2.2
1,072,824	-		CCNA_00992	0.20	+2.4
1,072,824	-		CCNA_00992	0.20	+2.9
1,072,854	-		CCNA_00992	0.23	+2.7
1,072,885	-		CCNA_00992	0.26	+3.2
1,072,885	-		CCNA_00992	0.26	+1.8
1,072,895	+		CCNA_00992	0.27	+1.3
1,072,903	-		CCNA_00992	0.27	+2.7
1,072,915	-		CCNA_00992	0.29	+2.4
1,072,915	-		CCNA_00992	0.29	+2.8
1,072,964	+		CCNA_00992	0.33	+1.6
1,072,964	+		CCNA_00992	0.33	+1.2
1,072,964	+		CCNA_00992	0.33	+2.2
1,072,964	+		CCNA_00992	0.33	-0.4
1,072,964	+		CCNA_00992	0.33	+0.4
1,072,972	-		CCNA_00992	0.34	+2.8
1,073,036	+		CCNA_00992	0.41	+0.5
1,073,036	+		CCNA_00992	0.41	+2.1
1,073,036	+		CCNA_00992	0.41	+0.3
1,073,044	-		CCNA_00992	0.41	+2.2
1,073,055	+		CCNA_00992	0.42	+1.2
1,073,055	+		CCNA_00992	0.42	-0.1
1,073,055	+		CCNA_00992	0.42	-1.3
1,073,055	+		CCNA_00992	0.42	-1.4
1,073,063	-		CCNA_00992	0.43	+2.2
1,073,063	-		CCNA_00992	0.43	+2.1
1,073,063	-		CCNA_00992	0.43	+2.7
1,073,071	-		CCNA_00992	0.44	+2.3
1,073,078	-		CCNA_00992	0.45	-0.6
1,073,084	-		CCNA_00992	0.45	+2.4
1,073,106	+		CCNA_00992	0.47	-0.7
1,073,126	-		CCNA_00992	0.49	+3.3
1,073,134	+		CCNA_00992	0.50	+0.1
1,073,137	-		CCNA_00992	0.50	+2.2
1,073,137	-		CCNA_00992	0.50	+3.3
1,073,155	-		CCNA_00992	0.52	+2.2
1,073,171	+		CCNA_00992	0.54	+0.1
1,073,171	+		CCNA_00992	0.54	+2.2
1,073,179	-		CCNA_00992	0.55	+2.4
1,073,179	-		CCNA_00992	0.55	+2.7
1,073,179	-		CCNA_00992	0.55	+2.8
1,073,179	-		CCNA_00992	0.55	+2.6
1,073,181	+		CCNA_00992	0.55	+0.7
1,073,203	-		CCNA_00992	0.57	+2.3
1,073,205	+		CCNA_00992	0.57	+0.6
1,073,205	+		CCNA_00992	0.57	-0.2
1,073,205	+		CCNA_00992	0.57	+0.3
1,073,208	-		CCNA_00992	0.57	+3.6
1,073,213	+		CCNA_00992	0.58	+1.2
1,073,213	-		CCNA_00992	0.58	+2.7
1,073,213	-				+2.2
1,073,213	-		CCNA_00992	0.58	+2.5
1,073,221	-		CCNA_00992	0.59	+2.4
1,073,221	-		CCNA_00992	0.59	+2.4
1,073,221	-		CCNA_00992	0.59	+2.6
1,073,251	-		CCNA_00992	0.62	+3.2
1,073,259	+		CCNA_00992	0.63	-0.8
1,073,262	-		CCNA_00992	0.63	+2.8
1,073,267	-		CCNA_00992	0.63	+2.6
1,073,347	-		CCNA_00992	0.71	+1.9
1,073,377	-		CCNA_00992	0.74	+2.7
1,073,407	-		CCNA_00992	0.77	+2.0
1,073,454	+		CCNA_00992	0.82	-0.7
1,073,498	-		CCNA_00992	0.86	+1.9
1,073,521	-		CCNA_00992	0.88	+1.6
1,073,521	-		CCNA_00992	0.88	+3.4
1,073,523	-		CCNA_00992	0.89	+1.8
1,073,561	+				-0.5
1,073,561	+				+0.3
1,073,561	+				-2.3
1,073,561	+				-0.0
1,073,569	-				+0.9
1,073,569	-				+0.8
1,073,579	-				+1.9
1,073,579	-				+2.0
1,073,581	+				-0.8
1,073,624	+				-0.8
1,073,627	+				+0.7
1,073,707	+				+0.6
1,073,723	+				+1.6
1,073,755	-				-0.2
1,073,760	-				-0.6
1,073,760	-				+0.6
1,073,760	-				+0.0
1,073,833	+				+0.4
1,073,841	-				-1.5
1,073,848	+				-0.8
1,073,848	+				+1.0
1,073,856	-				-0.2
1,073,856	-				-1.3
1,073,865	-		CCNA_00993	0.10	-0.2
1,073,898	-		CCNA_00993	0.12	-1.0
1,073,915	+		CCNA_00993	0.13	+0.6
1,073,935	+		CCNA_00993	0.15	-0.0
1,073,943	-		CCNA_00993	0.15	-1.9
1,073,972	+		CCNA_00993	0.17	+0.7
1,073,972	+		CCNA_00993	0.17	+0.2
1,073,973	+		CCNA_00993	0.17	-1.4
1,073,973	+		CCNA_00993	0.17	-0.2
1,073,973	+		CCNA_00993	0.17	+0.4
1,073,973	+		CCNA_00993	0.17	-0.2
1,073,980	-		CCNA_00993	0.18	-0.4
1,073,980	-		CCNA_00993	0.18	-0.2
1,073,980	-		CCNA_00993	0.18	+0.2
1,073,981	-		CCNA_00993	0.18	-0.2
1,073,981	-		CCNA_00993	0.18	-1.3
1,073,981	-		CCNA_00993	0.18	-0.0
1,074,019	-		CCNA_00993	0.20	+0.4
1,074,059	+		CCNA_00993	0.23	-0.4
1,074,081	+		CCNA_00993	0.24	+0.3
1,074,086	+		CCNA_00993	0.24	-0.2
1,074,093	-		CCNA_00993	0.25	+0.3
1,074,094	-		CCNA_00993	0.25	+1.8
1,074,108	-		CCNA_00993	0.26	-2.5
1,074,140	+		CCNA_00993	0.28	+0.1
1,074,152	+		CCNA_00993	0.29	+1.3
1,074,168	-		CCNA_00993	0.30	-0.0
1,074,231	+		CCNA_00993	0.34	+0.2
1,074,236	+		CCNA_00993	0.34	-0.2
1,074,238	+		CCNA_00993	0.34	+1.8
1,074,246	-		CCNA_00993	0.35	-0.7
1,074,259	+		CCNA_00993	0.36	-0.8
1,074,263	-		CCNA_00993	0.36	-0.2
1,074,264	+		CCNA_00993	0.36	+0.7
1,074,272	+		CCNA_00993	0.37	+3.4
1,074,373	+		CCNA_00993	0.43	+0.3
1,074,390	+		CCNA_00993	0.44	+3.1
1,074,392	+		CCNA_00993	0.44	-0.6
1,074,395	+		CCNA_00993	0.45	-0.5
1,074,398	-		CCNA_00993	0.45	+0.6
1,074,458	+		CCNA_00993	0.49	-0.8
1,074,466	-		CCNA_00993	0.49	-0.8
1,074,468	+		CCNA_00993	0.49	+1.6
1,074,494	+		CCNA_00993	0.51	+0.6
1,074,494	+		CCNA_00993	0.51	-0.8
1,074,497	-		CCNA_00993	0.51	-0.6
1,074,515	+		CCNA_00993	0.52	-0.0
1,074,515	+		CCNA_00993	0.52	+0.9
1,074,515	+		CCNA_00993	0.52	-1.0
1,074,517	-		CCNA_00993	0.52	-0.8
1,074,523	-		CCNA_00993	0.53	+1.3
1,074,523	-		CCNA_00993	0.53	+1.6
1,074,523	-		CCNA_00993	0.53	+1.6
1,074,530	+		CCNA_00993	0.53	+0.8
1,074,530	+		CCNA_00993	0.53	+0.7
1,074,530	+		CCNA_00993	0.53	+0.2
1,074,532	-		CCNA_00993	0.53	+0.6
1,074,548	-		CCNA_00993	0.54	-0.9
1,074,599	+		CCNA_00993	0.58	-0.8
1,074,599	+		CCNA_00993	0.58	-1.2
1,074,599	+		CCNA_00993	0.58	+0.4
1,074,599	+		CCNA_00993	0.58	+1.8
1,074,599	+		CCNA_00993	0.58	+1.2
1,074,599	+		CCNA_00993	0.58	+0.2
1,074,607	-		CCNA_00993	0.58	-0.2
1,074,607	-		CCNA_00993	0.58	+0.1
1,074,607	-		CCNA_00993	0.58	+1.5
1,074,610	+		CCNA_00993	0.58	+0.8
1,074,610	+		CCNA_00993	0.58	-0.0
1,074,623	+		CCNA_00993	0.59	-1.3
1,074,623	+		CCNA_00993	0.59	+0.4
1,074,631	-		CCNA_00993	0.60	-1.1