Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00989

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,068,659	-		CCNA_00988	0.37	-0.0
1,068,727	-		CCNA_00988	0.42	-0.2
1,068,791	+		CCNA_00988	0.46	-1.2
1,068,821	+		CCNA_00988	0.48	-0.2
1,068,829	-		CCNA_00988	0.49	-2.0
1,068,829	-		CCNA_00988	0.49	+2.4
1,068,841	+		CCNA_00988	0.49	+0.1
1,068,849	-		CCNA_00988	0.50	+2.1
1,068,849	-		CCNA_00988	0.50	-1.9
1,068,851	+		CCNA_00988	0.50	+0.3
1,068,895	-		CCNA_00988	0.53	-2.2
1,068,928	-		CCNA_00988	0.56	+0.4
1,069,000	+		CCNA_00988	0.60	+1.1
1,069,048	+		CCNA_00988	0.64	-0.3
1,069,126	+		CCNA_00988	0.69	-1.8
1,069,126	+		CCNA_00988	0.69	+1.2
1,069,126	+		CCNA_00988	0.69	-0.1
1,069,126	+		CCNA_00988	0.69	+1.3
1,069,126	+		CCNA_00988	0.69	+0.4
1,069,152	-		CCNA_00988	0.71	+0.7
1,069,225	+		CCNA_00988	0.76	-0.5
1,069,225	+		CCNA_00988	0.76	-1.8
1,069,233	-		CCNA_00988	0.77	+0.1
1,069,334	+		CCNA_00988	0.84	-1.4
1,069,343	-		CCNA_00988	0.84	-0.5
1,069,344	+		CCNA_00988	0.84	+2.7
1,069,344	+		CCNA_00988	0.84	+2.8
1,069,358	-		CCNA_00988	0.85	-0.6
1,069,366	+		CCNA_00988	0.86	-1.3
1,069,434	-				-1.0
1,069,436	+				-0.6
1,069,451	-				-0.2
1,069,478	-				-0.7
1,069,478	-				-0.6
1,069,488	+				-1.6
1,069,488	+				-0.2
1,069,488	+				-0.7
1,069,488	+				-0.3
1,069,496	-				+0.7
1,069,496	-				-0.7
1,069,496	-				+1.1
1,069,496	-				+1.6
1,069,506	-				+1.1
1,069,532	+				+0.7
1,069,540	-				+0.7
1,069,546	-				+0.5
1,069,546	-				-0.9
1,069,572	-				-0.6
1,069,572	-				-0.8
1,069,578	-				+1.6
1,069,592	+				+2.6
1,069,609	-				+0.2
1,069,638	+				+1.9
1,069,638	+				+0.6
1,069,638	+				+1.1
1,069,646	-				+0.1
1,069,664	+				+0.8
1,069,672	-				+0.1
1,069,682	-				+2.7
1,069,692	-				+0.1
1,069,720	+				-1.4
1,069,728	-				-0.8
1,069,757	+				+1.8
1,069,776	-				+0.8
1,069,783	-				+0.4
1,069,795	+				+1.6
1,069,809	+				-0.3
1,069,817	+				-0.4
1,069,817	+				+0.3
1,069,825	-				-1.2
1,069,825	-				-0.6
1,069,881	+		CCNA_00989	0.12	-0.6
1,069,889	-		CCNA_00989	0.12	+1.0
1,069,891	+		CCNA_00989	0.12	+1.3
1,069,903	-		CCNA_00989	0.13	+0.4
1,069,922	-		CCNA_00989	0.14	+0.7
1,069,944	+		CCNA_00989	0.15	-0.7
1,069,963	-		CCNA_00989	0.16	-0.2
1,070,013	-		CCNA_00989	0.19	-0.4
1,070,025	+		CCNA_00989	0.19	+0.4
1,070,033	-		CCNA_00989	0.20	-0.9
1,070,033	-		CCNA_00989	0.20	+2.1
1,070,078	-		CCNA_00989	0.22	+0.1
1,070,110	+		CCNA_00989	0.24	-0.8
1,070,130	+		CCNA_00989	0.25	-0.0
1,070,140	+		CCNA_00989	0.25	-0.4
1,070,140	+		CCNA_00989	0.25	-0.9
1,070,140	+		CCNA_00989	0.25	+0.1
1,070,148	-		CCNA_00989	0.26	-1.3
1,070,148	-		CCNA_00989	0.26	+0.1
1,070,153	+		CCNA_00989	0.26	+0.8
1,070,186	-		CCNA_00989	0.28	-1.3
1,070,186	-		CCNA_00989	0.28	+0.2
1,070,191	+		CCNA_00989	0.28	-0.2
1,070,238	-		CCNA_00989	0.31	+0.7
1,070,265	+		CCNA_00989	0.32	-1.1
1,070,297	+		CCNA_00989	0.34	+0.8
1,070,305	-		CCNA_00989	0.34	-0.1
1,070,314	+		CCNA_00989	0.35	-0.8
1,070,314	+		CCNA_00989	0.35	+0.4
1,070,314	+		CCNA_00989	0.35	-0.9
1,070,314	+		CCNA_00989	0.35	+1.6
1,070,322	-		CCNA_00989	0.35	+0.6
1,070,322	-		CCNA_00989	0.35	-1.1
1,070,322	-		CCNA_00989	0.35	-1.8
1,070,322	-		CCNA_00989	0.35	+0.1
1,070,349	+		CCNA_00989	0.36	-1.3
1,070,352	-		CCNA_00989	0.37	+0.8
1,070,375	-		CCNA_00989	0.38	-0.2
1,070,433	-		CCNA_00989	0.41	-1.9
1,070,453	+		CCNA_00989	0.42	-1.2
1,070,478	+		CCNA_00989	0.43	+0.8
1,070,501	-		CCNA_00989	0.44	-0.9
1,070,530	+		CCNA_00989	0.46	-0.7
1,070,548	-		CCNA_00989	0.47	-0.5
1,070,548	-				+1.3
1,070,553	+		CCNA_00989	0.47	+2.1
1,070,553	-				+1.3
1,070,588	+		CCNA_00989	0.49	+0.6
1,070,589	-		CCNA_00989	0.49	+0.6
1,070,595	-		CCNA_00989	0.49	+2.6
1,070,596	-		CCNA_00989	0.49	+2.1
1,070,598	+		CCNA_00989	0.49	-1.7
1,070,605	-		CCNA_00989	0.50	-1.3
1,070,634	+		CCNA_00989	0.51	-0.1
1,070,639	+		CCNA_00989	0.52	+0.7
1,070,639	+		CCNA_00989	0.52	-1.7
1,070,639	+		CCNA_00989	0.52	-0.1
1,070,642	-		CCNA_00989	0.52	+0.6
1,070,658	+		CCNA_00989	0.53	-0.2
1,070,764	+		CCNA_00989	0.58	+0.6
1,070,771	-		CCNA_00989	0.59	+2.1
1,070,771	-		CCNA_00989	0.59	-1.6
1,070,772	-		CCNA_00989	0.59	-0.5
1,070,892	+		CCNA_00989	0.65	+1.4
1,070,892	+		CCNA_00989	0.65	+0.6
1,070,900	-		CCNA_00989	0.65	+0.2
1,070,906	+		CCNA_00989	0.66	-1.7
1,070,906	+		CCNA_00989	0.66	-1.2
1,070,929	+		CCNA_00989	0.67	-0.2
1,071,012	-		CCNA_00989	0.71	+0.4
1,071,020	+		CCNA_00989	0.72	+0.6
1,071,028	-		CCNA_00989	0.72	+0.3
1,071,069	-		CCNA_00989	0.74	+0.8
1,071,080	+		CCNA_00989	0.75	+0.5
1,071,080	+		CCNA_00989	0.75	-1.4
1,071,115	+		CCNA_00989	0.77	+1.3
1,071,120	+		CCNA_00989	0.77	+0.6
1,071,120	+		CCNA_00989	0.77	-1.0
1,071,120	+		CCNA_00989	0.77	+1.7
1,071,120	+		CCNA_00989	0.77	+1.6
1,071,120	+		CCNA_00989	0.77	+0.2
1,071,120	+		CCNA_00989	0.77	-0.7
1,071,121	+		CCNA_00989	0.77	-1.4
1,071,123	-		CCNA_00989	0.77	-1.7
1,071,128	-		CCNA_00989	0.77	-1.7
1,071,129	-		CCNA_00989	0.77	+0.8
1,071,141	+		CCNA_00989	0.78	+0.1
1,071,141	+		CCNA_00989	0.78	-1.1
1,071,178	+		CCNA_00989	0.80	-1.8
1,071,205	+		CCNA_00989	0.81	-0.5
1,071,253	+		CCNA_00989	0.84	-0.3
1,071,253	+		CCNA_00989	0.84	-0.8
1,071,253	+		CCNA_00989	0.84	+0.7
1,071,253	+		CCNA_00989	0.84	-1.9
1,071,253	+		CCNA_00989	0.84	+0.1
1,071,253	+		CCNA_00989	0.84	+0.5
1,071,253	+		CCNA_00989	0.84	-0.1
1,071,261	-		CCNA_00989	0.84	-1.4
1,071,261	-		CCNA_00989	0.84	-1.2
1,071,261	-		CCNA_00989	0.84	+0.4
1,071,261	-		CCNA_00989	0.84	-1.2
1,071,261	-		CCNA_00989	0.84	-0.6
1,071,317	-		CCNA_00989	0.87	-0.2
1,071,341	-		CCNA_00989	0.89	-0.7
1,071,348	+		CCNA_00989	0.89	-1.8
1,071,355	-		CCNA_00989	0.89	-1.2
1,071,366	+		CCNA_00989	0.90	-1.1
1,071,471	+				-1.9
1,071,499	+				-0.2
1,071,514	+				+3.1
1,071,514	+				-0.1
1,071,519	+				+1.5
1,071,522	-				-1.8
1,071,561	-				-1.7
1,071,561	-				-2.0
1,071,561	-				-0.9
1,071,572	+				-0.2
1,071,580	+				-0.3
1,071,580	-				+0.8
1,071,580	-				-0.9
1,071,588	-				+0.1
1,071,590	+				+0.7
1,071,621	-				-0.8
1,071,640	+		CCNA_00990	0.12	-1.5
1,071,648	-		CCNA_00990	0.14	-1.0
1,071,658	+		CCNA_00990	0.16	-1.0
1,071,663	+		CCNA_00990	0.17	-1.1
1,071,684	-		CCNA_00990	0.22	-1.3
1,071,741	+		CCNA_00990	0.34	+0.1
1,071,743	-		CCNA_00990	0.34	-1.0
1,071,760	+		CCNA_00990	0.38	+0.6
1,071,762	-		CCNA_00990	0.38	+0.2
1,071,767	-		CCNA_00990	0.39	+0.2
1,071,774	-		CCNA_00990	0.41	-1.3
1,071,774	-		CCNA_00990	0.41	-0.6
1,071,851	+		CCNA_00990	0.57	-0.2
1,071,880	+		CCNA_00990	0.63	-1.6
1,071,885	+		CCNA_00990	0.64	-0.5
1,071,885	+		CCNA_00990	0.64	+1.0
1,071,888	-		CCNA_00990	0.65	-1.1
1,071,890	+		CCNA_00990	0.65	-0.1
1,071,893	-		CCNA_00990	0.66	-0.8
1,071,931	+		CCNA_00990	0.74	+0.4
1,071,935	-		CCNA_00990	0.75	-1.1
1,071,935	-		CCNA_00990	0.75	+0.4
1,071,958	+		CCNA_00990	0.80	+0.3
1,072,001	-		CCNA_00990	0.89	+1.0
1,072,002	-		CCNA_00990	0.89	+1.6
1,072,019	+				+1.3
1,072,025	+				+0.5
1,072,025	+				-0.8
1,072,029	+				-0.5
1,072,043	-				+1.0
1,072,069	-				-0.8
1,072,069	-				+1.8
1,072,069	-				-1.1
1,072,069	-				+0.4
1,072,069	-				+2.6
1,072,069	-				-0.3
1,072,069	-				-1.3
1,072,092	-				+4.7
1,072,107	+				-0.9
1,072,107	+				+0.3
1,072,115	-				+0.1
1,072,115	-				+0.5
1,072,125	-				+1.5
1,072,125	-				-0.0
1,072,125	-				+0.1
1,072,143	-				+2.0
1,072,143	-				+1.5
1,072,150	+				+0.2
1,072,158	-				-0.4
1,072,198	-		CCNA_00991	0.19	+0.8
1,072,226	-		CCNA_00991	0.25	-0.4
1,072,267	+		CCNA_00991	0.34	-0.3
1,072,267	+		CCNA_00991	0.34	+0.4
1,072,275	-		CCNA_00991	0.36	-0.1
1,072,275	-		CCNA_00991	0.36	+0.0
1,072,275	-		CCNA_00991	0.36	+0.8
1,072,287	-		CCNA_00991	0.39	+1.3
1,072,310	-		CCNA_00991	0.44	+0.5
1,072,315	+		CCNA_00991	0.45	+0.9
1,072,322	+		CCNA_00991	0.47	+0.2
1,072,329	+		CCNA_00991	0.48	-0.1
1,072,337	-		CCNA_00991	0.50	+1.2
1,072,341	-		CCNA_00991	0.51	-0.6
1,072,369	+		CCNA_00991	0.57	-0.4
1,072,376	-		CCNA_00991	0.59	-1.0
1,072,376	-		CCNA_00991	0.59	-0.2
1,072,377	-		CCNA_00991	0.59	-0.5
1,072,381	-		CCNA_00991	0.60	+1.2
1,072,417	+		CCNA_00991	0.68	+0.8
1,072,467	+		CCNA_00991	0.79	-0.1
1,072,475	-		CCNA_00991	0.81	-0.7
1,072,477	+		CCNA_00991	0.81	-0.5
1,072,477	+		CCNA_00991	0.81	-0.3
1,072,540	+				-0.2
1,072,554	-				+2.8