Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00985

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,063,627	+		CCNA_00983	0.80	-0.9
1,063,654	-		CCNA_00983	0.82	-2.0
1,063,654	-		CCNA_00983	0.82	+0.9
1,063,728	-		CCNA_00983	0.86	+0.0
1,063,738	-		CCNA_00983	0.86	-1.1
1,063,748	-		CCNA_00983	0.87	+2.2
1,063,748	-		CCNA_00983	0.87	-0.7
1,063,815	+				+1.7
1,063,818	-				-0.2
1,063,818	-				+1.8
1,063,823	-				+1.0
1,063,838	+				+1.0
1,063,839	+				+0.8
1,063,839	+				+1.6
1,063,933	+				+0.1
1,063,972	+				+1.1
1,063,972	+				+1.1
1,063,972	+				+0.9
1,063,972	+				-0.4
1,063,972	+				+0.1
1,063,972	+				+0.1
1,063,972	+				-0.3
1,063,972	+				-0.3
1,063,972	+				+0.7
1,063,972	+				-1.0
1,063,980	-				+0.3
1,063,980	-				+0.1
1,063,980	-				+0.1
1,063,980	-				+0.7
1,063,980	-				-0.2
1,063,980	-				-0.5
1,063,991	-				-0.0
1,063,995	+				+0.8
1,063,996	-				+0.4
1,063,997	-				+0.2
1,064,003	+				-2.0
1,064,008	+				+1.3
1,064,011	-				+0.8
1,064,079	-				+0.0
1,064,114	-				+0.2
1,064,150	-		CCNA_00984	0.16	-0.9
1,064,208	-		CCNA_00984	0.26	-0.4
1,064,245	+		CCNA_00984	0.33	+1.3
1,064,253	-		CCNA_00984	0.35	+0.8
1,064,269	-		CCNA_00984	0.38	-1.8
1,064,279	-		CCNA_00984	0.39	-0.7
1,064,293	+		CCNA_00984	0.42	-0.4
1,064,293	+		CCNA_00984	0.42	+1.1
1,064,345	-		CCNA_00984	0.51	-0.4
1,064,349	+		CCNA_00984	0.52	+1.0
1,064,354	+		CCNA_00984	0.53	+0.7
1,064,359	+		CCNA_00984	0.54	-0.2
1,064,359	+		CCNA_00984	0.54	+0.6
1,064,359	+		CCNA_00984	0.54	+0.1
1,064,359	+		CCNA_00984	0.54	+0.4
1,064,359	+		CCNA_00984	0.54	-0.6
1,064,359	+		CCNA_00984	0.54	-0.3
1,064,359	+		CCNA_00984	0.54	+0.1
1,064,359	+		CCNA_00984	0.54	-0.6
1,064,359	+		CCNA_00984	0.54	+0.7
1,064,367	-		CCNA_00984	0.55	-0.2
1,064,367	-		CCNA_00984	0.55	+1.2
1,064,367	-		CCNA_00984	0.55	+0.5
1,064,367	-		CCNA_00984	0.55	+0.2
1,064,367	-		CCNA_00984	0.55	-0.3
1,064,367	-		CCNA_00984	0.55	+0.1
1,064,367	-		CCNA_00984	0.55	+1.5
1,064,399	-		CCNA_00984	0.61	+0.7
1,064,403	-		CCNA_00984	0.62	-1.4
1,064,403	-		CCNA_00984	0.62	+0.0
1,064,405	+		CCNA_00984	0.62	-0.4
1,064,413	-		CCNA_00984	0.64	-0.6
1,064,413	-		CCNA_00984	0.64	+0.2
1,064,417	+		CCNA_00984	0.64	-1.2
1,064,417	+		CCNA_00984	0.64	+0.8
1,064,424	-		CCNA_00984	0.66	+1.6
1,064,425	-		CCNA_00984	0.66	-1.4
1,064,439	-		CCNA_00984	0.68	+1.2
1,064,447	+		CCNA_00984	0.70	+0.1
1,064,455	-		CCNA_00984	0.71	-0.1
1,064,455	-		CCNA_00984	0.71	+0.8
1,064,507	+		CCNA_00984	0.81	-1.5
1,064,507	+		CCNA_00984	0.81	-1.9
1,064,507	+		CCNA_00984	0.81	+1.3
1,064,507	+		CCNA_00984	0.81	-0.2
1,064,515	-		CCNA_00984	0.82	+2.0
1,064,526	+		CCNA_00984	0.84	+1.1
1,064,527	+		CCNA_00984	0.84	-1.3
1,064,527	+		CCNA_00984	0.84	+0.1
1,064,527	+		CCNA_00984	0.84	-0.5
1,064,530	-		CCNA_00984	0.85	+0.3
1,064,535	-		CCNA_00984	0.86	+1.4
1,064,535	-		CCNA_00984	0.86	+1.0
1,064,558	-				+1.4
1,064,568	-				+0.8
1,064,608	+				-0.8
1,064,638	+				-0.3
1,064,653	+				+1.6
1,064,661	-				-0.2
1,064,666	-				+2.1
1,064,689	-				+2.5
1,064,689	-				+2.4
1,064,703	+				-0.6
1,064,722	-				+0.5
1,064,725	+				-0.9
1,064,741	+				-1.2
1,064,759	-				+1.8
1,064,761	+				-1.2
1,064,776	-				+2.2
1,064,789	+				-0.1
1,064,827	-				+1.1
1,064,827	-				+1.1
1,064,839	+		CCNA_00985	0.10	+0.4
1,064,848	+		CCNA_00985	0.11	-1.2
1,064,868	+		CCNA_00985	0.12	+1.1
1,064,875	-		CCNA_00985	0.12	-0.4
1,064,892	+		CCNA_00985	0.13	+1.1
1,064,900	-		CCNA_00985	0.13	+0.7
1,064,903	+		CCNA_00985	0.13	-1.1
1,064,947	+		CCNA_00985	0.15	-0.9
1,064,952	+		CCNA_00985	0.16	-0.4
1,064,953	-		CCNA_00985	0.16	+0.4
1,064,955	-		CCNA_00985	0.16	+0.4
1,064,955	-		CCNA_00985	0.16	-0.5
1,064,955	-		CCNA_00985	0.16	+1.0
1,064,957	+		CCNA_00985	0.16	-0.4
1,064,960	-		CCNA_00985	0.16	+0.8
1,064,965	-		CCNA_00985	0.16	+2.6
1,064,965	-		CCNA_00985	0.16	-0.3
1,064,974	+		CCNA_00985	0.17	+0.1
1,064,982	-		CCNA_00985	0.17	+1.6
1,065,022	+		CCNA_00985	0.19	+1.8
1,065,049	+		CCNA_00985	0.20	+1.9
1,065,049	+		CCNA_00985	0.20	+1.8
1,065,076	+		CCNA_00985	0.21	-0.9
1,065,078	+		CCNA_00985	0.21	+0.1
1,065,084	-		CCNA_00985	0.22	+1.5
1,065,192	+		CCNA_00985	0.27	-0.4
1,065,203	+		CCNA_00985	0.27	+0.5
1,065,203	+		CCNA_00985	0.27	+0.8
1,065,211	-		CCNA_00985	0.27	-0.0
1,065,211	-		CCNA_00985	0.27	+1.0
1,065,211	-		CCNA_00985	0.27	+2.7
1,065,287	-		CCNA_00985	0.31	+0.7
1,065,321	-		CCNA_00985	0.32	+1.6
1,065,329	+		CCNA_00985	0.33	+0.8
1,065,337	-		CCNA_00985	0.33	+2.7
1,065,352	-		CCNA_00985	0.34	+1.2
1,065,380	+		CCNA_00985	0.35	+0.1
1,065,435	+		CCNA_00985	0.38	+2.0
1,065,451	+		CCNA_00985	0.38	-0.9
1,065,465	+		CCNA_00985	0.39	-0.4
1,065,480	-		CCNA_00985	0.40	+1.5
1,065,515	-		CCNA_00985	0.41	+1.6
1,065,517	-		CCNA_00985	0.41	+1.0
1,065,528	+		CCNA_00985	0.42	+1.1
1,065,563	-		CCNA_00985	0.43	+0.1
1,065,585	+		CCNA_00985	0.44	-0.6
1,065,607	-		CCNA_00985	0.45	-0.6
1,065,607	-		CCNA_00985	0.45	+0.6
1,065,608	-		CCNA_00985	0.46	+1.1
1,065,622	+		CCNA_00985	0.46	-1.4
1,065,627	+		CCNA_00985	0.46	-1.1
1,065,627	+		CCNA_00985	0.46	-0.0
1,065,630	-		CCNA_00985	0.47	+2.1
1,065,635	-		CCNA_00985	0.47	+1.3
1,065,659	-		CCNA_00985	0.48	+1.6
1,065,665	-		CCNA_00985	0.48	-0.4
1,065,672	-		CCNA_00985	0.48	+1.3
1,065,682	+		CCNA_00985	0.49	+0.8
1,065,690	-		CCNA_00985	0.49	+0.6
1,065,711	+		CCNA_00985	0.50	-0.3
1,065,736	+		CCNA_00985	0.51	-1.2
1,065,744	-		CCNA_00985	0.52	-1.6
1,065,795	+		CCNA_00985	0.54	+2.1
1,065,816	+		CCNA_00985	0.55	-0.2
1,065,829	-		CCNA_00985	0.56	-1.0
1,065,843	+		CCNA_00985	0.56	+4.1
1,065,851	-		CCNA_00985	0.57	+0.6
1,065,861	-		CCNA_00985	0.57	+2.1
1,065,863	+		CCNA_00985	0.57	+2.6
1,065,863	+		CCNA_00985	0.57	+1.3
1,065,863	+		CCNA_00985	0.57	+0.1
1,065,863	+		CCNA_00985	0.57	+1.1
1,065,871	-		CCNA_00985	0.58	+2.0
1,065,871	-		CCNA_00985	0.58	+0.8
1,065,871	-		CCNA_00985	0.58	+0.8
1,065,871	-		CCNA_00985	0.58	+0.1
1,065,898	+		CCNA_00985	0.59	-1.4
1,066,007	-		CCNA_00985	0.64	+0.7
1,066,013	-		CCNA_00985	0.64	+1.3
1,066,019	+		CCNA_00985	0.64	-2.7
1,066,021	+		CCNA_00985	0.64	-1.4
1,066,021	+		CCNA_00985	0.64	+2.1
1,066,026	+		CCNA_00985	0.65	-0.2
1,066,029	-		CCNA_00985	0.65	-0.6
1,066,029	-		CCNA_00985	0.65	+1.7
1,066,029	-		CCNA_00985	0.65	+1.8
1,066,029	-		CCNA_00985	0.65	+0.3
1,066,029	-		CCNA_00985	0.65	-1.2
1,066,034	-		CCNA_00985	0.65	-0.2
1,066,051	+		CCNA_00985	0.66	-0.4
1,066,051	+		CCNA_00985	0.66	-0.2
1,066,059	-		CCNA_00985	0.66	+2.4
1,066,086	+		CCNA_00985	0.67	-0.6
1,066,113	-		CCNA_00985	0.69	+0.8
1,066,113	-		CCNA_00985	0.69	-0.1
1,066,135	+		CCNA_00985	0.70	+1.1
1,066,143	-		CCNA_00985	0.70	+0.2
1,066,158	+		CCNA_00985	0.71	+0.8
1,066,158	+		CCNA_00985	0.71	-1.0
1,066,158	+		CCNA_00985	0.71	-1.7
1,066,161	-		CCNA_00985	0.71	+0.1
1,066,166	-		CCNA_00985	0.71	+0.6
1,066,166	-		CCNA_00985	0.71	+0.7
1,066,166	-		CCNA_00985	0.71	+2.0
1,066,173	+		CCNA_00985	0.71	+0.1
1,066,173	+		CCNA_00985	0.71	+1.8
1,066,194	+		CCNA_00985	0.72	-1.2
1,066,194	+		CCNA_00985	0.72	-1.5
1,066,205	-		CCNA_00985	0.73	+1.6
1,066,217	+		CCNA_00985	0.73	-0.9
1,066,222	-		CCNA_00985	0.74	-0.6
1,066,227	-		CCNA_00985	0.74	+0.9
1,066,232	-		CCNA_00985	0.74	+0.4
1,066,245	+		CCNA_00985	0.75	+0.2
1,066,245	+		CCNA_00985	0.75	+1.0
1,066,253	+		CCNA_00985	0.75	-0.1
1,066,253	+		CCNA_00985	0.75	+0.1
1,066,253	+		CCNA_00985	0.75	-1.0
1,066,253	-		CCNA_00985	0.75	+1.1
1,066,253	-		CCNA_00985	0.75	+0.3
1,066,261	-		CCNA_00985	0.75	-0.3
1,066,261	-		CCNA_00985	0.75	+0.3
1,066,273	-		CCNA_00985	0.76	-0.1
1,066,297	+		CCNA_00985	0.77	+0.4
1,066,304	-		CCNA_00985	0.77	+1.2
1,066,305	-		CCNA_00985	0.77	+0.3
1,066,321	+		CCNA_00985	0.78	-0.6
1,066,345	-		CCNA_00985	0.79	-0.6
1,066,365	+		CCNA_00985	0.80	+0.9
1,066,380	-		CCNA_00985	0.81	+1.9
1,066,400	+		CCNA_00985	0.82	+0.6
1,066,449	-		CCNA_00985	0.84	+0.8
1,066,454	-		CCNA_00985	0.84	-0.1
1,066,462	+		CCNA_00985	0.84	-2.2
1,066,516	+		CCNA_00985	0.87	+0.0
1,066,522	+		CCNA_00985	0.87	-0.7
1,066,522	+		CCNA_00985	0.87	-1.3
1,066,524	-		CCNA_00985	0.87	-0.8
1,066,524	-		CCNA_00985	0.87	+0.9
1,066,530	-		CCNA_00985	0.88	+1.7
1,066,530	-		CCNA_00985	0.88	+0.7
1,066,530	-		CCNA_00985	0.88	+1.4
1,066,530	-		CCNA_00985	0.88	-0.5
1,066,539	+		CCNA_00985	0.88	-1.8
1,066,561	+		CCNA_00985	0.89	+3.4
1,066,561	+		CCNA_00985	0.89	+3.3
1,066,566	+		CCNA_00985	0.89	+0.1
1,066,569	-		CCNA_00985	0.89	-1.6
1,066,571	+		CCNA_00985	0.89	+2.5
1,066,571	+		CCNA_00985	0.89	+2.3
1,066,574	-				+2.6
1,066,576	+		CCNA_00985	0.90	-1.2
1,066,579	-		CCNA_00985	0.90	+0.0
1,066,581	+		CCNA_00985	0.90	-0.9
1,066,589	-				+0.6
1,066,602	+				+0.7
1,066,704	+				-1.1
1,066,710	+				-2.4
1,066,711	+				-0.5
1,066,732	+				-1.0
1,066,740	-				-0.4
1,066,750	-				-1.5
1,066,820	+				-0.0
1,066,820	+				+0.3
1,066,820	+				+0.1
1,066,820	+				-0.0
1,066,820	-				-0.8
1,066,828	-				+3.1
1,066,828	-				+0.9
1,066,861	+				-0.8
1,066,876	+				-0.6
1,066,884	-				-0.2
1,066,949	-		CCNA_00986	0.13	-1.6
1,066,956	-		CCNA_00986	0.14	+0.8
1,066,958	+		CCNA_00986	0.14	+0.1
1,066,958	+		CCNA_00986	0.14	-0.8
1,066,958	+		CCNA_00986	0.14	-0.5
1,066,963	+		CCNA_00986	0.15	+1.2
1,066,963	+		CCNA_00986	0.15	+1.6
1,066,966	-		CCNA_00986	0.15	+0.3
1,066,971	-		CCNA_00986	0.15	+0.2
1,066,971	-		CCNA_00986	0.15	-1.4
1,066,989	-		CCNA_00986	0.17	-1.2
1,067,014	+		CCNA_00986	0.20	-0.3
1,067,041	+		CCNA_00986	0.23	-1.4
1,067,069	+		CCNA_00986	0.26	+1.3
1,067,077	-		CCNA_00986	0.26	+2.3
1,067,084	+		CCNA_00986	0.27	-0.7
1,067,092	-		CCNA_00986	0.28	+0.1
1,067,115	-		CCNA_00986	0.30	-0.8
1,067,127	+		CCNA_00986	0.32	-1.4
1,067,174	+		CCNA_00986	0.37	-0.3
1,067,182	-		CCNA_00986	0.37	+1.6
1,067,216	-		CCNA_00986	0.41	+0.7
1,067,224	-		CCNA_00986	0.42	+0.2
1,067,224	-		CCNA_00986	0.42	-1.4
1,067,296	+		CCNA_00986	0.49	+0.6
1,067,296	+		CCNA_00986	0.49	-0.8
1,067,303	+		CCNA_00986	0.50	-1.2
1,067,392	+		CCNA_00986	0.59	-0.9
1,067,471	+		CCNA_00986	0.68	+2.3
1,067,485	+		CCNA_00986	0.69	-1.6
1,067,514	-		CCNA_00986	0.72	-0.5
1,067,558	+		CCNA_00986	0.77	+0.1
1,067,568	+		CCNA_00986	0.78	+0.2
1,067,571	-		CCNA_00986	0.78	-1.8
1,067,598	-		CCNA_00986	0.81	+0.6
1,067,698	+				+0.1
1,067,698	+				+1.0
1,067,698	+				-0.3
1,067,706	-				+1.4
1,067,753	-				+1.6
1,067,764	+				-0.2
1,067,799	-				-1.2