Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00982

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,060,689	+		CCNA_00981	0.13	-0.7
1,060,689	+		CCNA_00981	0.13	-1.4
1,060,689	+		CCNA_00981	0.13	+0.4
1,060,697	-		CCNA_00981	0.14	-1.5
1,060,760	+		CCNA_00981	0.23	+0.8
1,060,804	-		CCNA_00981	0.29	+0.8
1,060,810	+		CCNA_00981	0.30	-0.8
1,060,825	+		CCNA_00981	0.32	+1.6
1,060,842	+		CCNA_00981	0.35	+1.6
1,060,850	-		CCNA_00981	0.36	-0.2
1,060,885	+		CCNA_00981	0.41	-0.9
1,060,991	+		CCNA_00981	0.56	+0.4
1,061,031	+		CCNA_00981	0.62	+0.1
1,061,031	+		CCNA_00981	0.62	+0.4
1,061,031	+		CCNA_00981	0.62	-0.6
1,061,039	-		CCNA_00981	0.63	+0.2
1,061,039	-		CCNA_00981	0.63	+1.8
1,061,039	-		CCNA_00981	0.63	-1.2
1,061,039	-		CCNA_00981	0.63	+0.7
1,061,042	+		CCNA_00981	0.63	+0.4
1,061,042	+		CCNA_00981	0.63	+0.8
1,061,050	-		CCNA_00981	0.64	+0.1
1,061,079	-		CCNA_00981	0.68	-2.3
1,061,079	-		CCNA_00981	0.68	+0.6
1,061,089	+		CCNA_00981	0.70	-0.0
1,061,092	-		CCNA_00981	0.70	+0.2
1,061,097	-		CCNA_00981	0.71	-1.1
1,061,102	-		CCNA_00981	0.72	-0.2
1,061,189	-		CCNA_00981	0.84	-0.9
1,061,191	+		CCNA_00981	0.84	+0.1
1,061,214	-		CCNA_00981	0.88	-0.7
1,061,214	-		CCNA_00981	0.88	-0.5
1,061,237	-				+1.0
1,061,267	+				-1.2
1,061,314	-				+1.0
1,061,331	-				-0.2
1,061,341	+				-2.3
1,061,433	-				-0.1
1,061,434	+				-0.3
1,061,571	+				-0.6
1,061,725	-		CCNA_00982	0.24	-0.2
1,061,725	-		CCNA_00982	0.24	-0.4
1,061,739	-		CCNA_00982	0.27	-0.7
1,061,770	+		CCNA_00982	0.34	+1.0
1,061,783	+		CCNA_00982	0.38	+1.0
1,061,783	+		CCNA_00982	0.38	+1.4
1,061,783	+		CCNA_00982	0.38	+1.7
1,061,788	+		CCNA_00982	0.39	+1.9
1,061,791	-		CCNA_00982	0.39	+1.3
1,061,799	+		CCNA_00982	0.41	+0.5
1,061,801	-		CCNA_00982	0.42	+0.8
1,061,834	+		CCNA_00982	0.49	+0.9
1,061,834	+		CCNA_00982	0.49	+0.7
1,061,847	-		CCNA_00982	0.52	-0.5
1,061,847	-		CCNA_00982	0.52	+0.3
1,061,847	-		CCNA_00982	0.52	+0.2
1,061,849	+		CCNA_00982	0.53	-0.4
1,061,855	+		CCNA_00982	0.54	+2.4
1,061,856	+		CCNA_00982	0.55	+0.0
1,061,863	-		CCNA_00982	0.56	-0.2
1,061,864	-		CCNA_00982	0.56	-1.5
1,061,865	+		CCNA_00982	0.57	-1.6
1,061,872	+		CCNA_00982	0.58	+2.2
1,061,880	-		CCNA_00982	0.60	-0.1
1,061,880	-		CCNA_00982	0.60	-0.3
1,061,891	+		CCNA_00982	0.63	+1.6
1,061,891	+		CCNA_00982	0.63	+2.0
1,061,893	+		CCNA_00982	0.63	+2.3
1,061,899	-		CCNA_00982	0.65	-1.0
1,061,920	+		CCNA_00982	0.69	+1.8
1,061,925	+		CCNA_00982	0.71	+1.6
1,061,930	+		CCNA_00982	0.72	+2.6
1,061,930	+		CCNA_00982	0.72	+1.7
1,061,936	+		CCNA_00982	0.73	+2.6
1,061,983	-		CCNA_00982	0.84	-0.4
1,061,992	-		CCNA_00982	0.86	-0.9
1,061,992	-		CCNA_00982	0.86	-1.4
1,062,006	-		CCNA_00982	0.90	-0.1
1,062,028	-				+0.2
1,062,052	-				+1.8
1,062,053	+				+2.9
1,062,110	+				+1.6
1,062,127	-				+1.0
1,062,153	+				+0.1
1,062,161	-				+0.1
1,062,161	-				-1.3
1,062,161	-				+1.4
1,062,168	+				-1.2
1,062,172	-				-1.5
1,062,176	-				-0.9
1,062,176	-				-1.0
1,062,196	-				-0.3
1,062,218	+				+0.2
1,062,235	+				+0.8
1,062,259	+				-1.4
1,062,267	-				+0.1
1,062,268	-				-0.4
1,062,276	+				-0.5
1,062,328	-				-0.0
1,062,346	-				+1.2
1,062,394	+		CCNA_00983	0.12	+0.4
1,062,395	+		CCNA_00983	0.12	+1.3
1,062,395	+		CCNA_00983	0.12	+1.8
1,062,401	-		CCNA_00983	0.13	+0.6
1,062,403	-		CCNA_00983	0.13	+0.8
1,062,408	+		CCNA_00983	0.13	-0.2
1,062,418	+		CCNA_00983	0.14	-0.2
1,062,418	+		CCNA_00983	0.14	-1.4
1,062,423	-		CCNA_00983	0.14	+1.6
1,062,440	+		CCNA_00983	0.15	+0.5
1,062,440	+		CCNA_00983	0.15	+0.5
1,062,450	+		CCNA_00983	0.15	-0.6
1,062,452	+		CCNA_00983	0.15	-1.1
1,062,475	-		CCNA_00983	0.17	-0.4
1,062,514	+		CCNA_00983	0.19	+0.1
1,062,515	-		CCNA_00983	0.19	-0.6
1,062,528	+		CCNA_00983	0.20	-0.2
1,062,536	-		CCNA_00983	0.20	-1.4
1,062,536	-		CCNA_00983	0.20	-0.1
1,062,536	-		CCNA_00983	0.20	+0.8
1,062,593	-		CCNA_00983	0.23	-0.9
1,062,699	-		CCNA_00983	0.29	+0.4
1,062,708	+		CCNA_00983	0.30	-0.4
1,062,724	-		CCNA_00983	0.30	+1.0
1,062,726	-		CCNA_00983	0.31	-1.6
1,062,738	-		CCNA_00983	0.31	-1.1
1,062,759	+		CCNA_00983	0.32	+1.8
1,062,759	+		CCNA_00983	0.32	+0.6
1,062,767	-		CCNA_00983	0.33	-1.1
1,062,767	-		CCNA_00983	0.33	+0.2
1,062,767	-		CCNA_00983	0.33	-0.1
1,062,767	-		CCNA_00983	0.33	-2.3
1,062,767	-		CCNA_00983	0.33	+0.6
1,062,772	-		CCNA_00983	0.33	-0.2
1,062,788	+		CCNA_00983	0.34	+1.0
1,062,882	+		CCNA_00983	0.39	+0.2
1,062,882	+		CCNA_00983	0.39	-1.4
1,062,890	-		CCNA_00983	0.40	-0.7
1,062,890	-		CCNA_00983	0.40	+1.8
1,062,897	+		CCNA_00983	0.40	-1.3
1,062,904	+		CCNA_00983	0.40	-0.6
1,062,905	-		CCNA_00983	0.40	-0.2
1,062,905	-		CCNA_00983	0.40	+1.4
1,062,910	-		CCNA_00983	0.41	+1.0
1,062,930	+		CCNA_00983	0.42	-1.4
1,062,953	+		CCNA_00983	0.43	-1.0
1,062,966	-		CCNA_00983	0.44	+0.7
1,063,000	-		CCNA_00983	0.46	+0.6
1,063,040	-		CCNA_00983	0.48	-1.5