Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00970

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,045,133	+		CCNA_00969	0.57	+1.8
1,045,141	-		CCNA_00969	0.58	-2.0
1,045,160	-		CCNA_00969	0.59	-1.3
1,045,164	-		CCNA_00969	0.59	-0.8
1,045,184	+		CCNA_00969	0.60	-0.4
1,045,184	+		CCNA_00969	0.60	+0.5
1,045,184	+		CCNA_00969	0.60	+3.1
1,045,184	+		CCNA_00969	0.60	+1.0
1,045,225	+				+1.8
1,045,225	+		CCNA_00969	0.63	-0.1
1,045,225	+		CCNA_00969	0.63	+1.1
1,045,225	+		CCNA_00969	0.63	-0.3
1,045,225	+		CCNA_00969	0.63	-0.6
1,045,225	+		CCNA_00969	0.63	-0.6
1,045,225	+		CCNA_00969	0.63	-0.2
1,045,225	+		CCNA_00969	0.63	-2.3
1,045,233	-		CCNA_00969	0.63	-0.5
1,045,233	-		CCNA_00969	0.63	-1.2
1,045,233	-		CCNA_00969	0.63	-1.2
1,045,233	-		CCNA_00969	0.63	-0.7
1,045,233	-		CCNA_00969	0.63	-0.9
1,045,233	-		CCNA_00969	0.63	+0.3
1,045,233	-		CCNA_00969	0.63	-1.0
1,045,233	-		CCNA_00969	0.63	-1.2
1,045,233	-		CCNA_00969	0.63	-1.1
1,045,233	-		CCNA_00969	0.63	+1.0
1,045,271	+		CCNA_00969	0.65	-1.3
1,045,286	-		CCNA_00969	0.66	+1.2
1,045,354	+		CCNA_00969	0.70	-0.8
1,045,354	+		CCNA_00969	0.70	+1.6
1,045,360	+		CCNA_00969	0.70	-0.5
1,045,360	+		CCNA_00969	0.70	-1.0
1,045,360	+		CCNA_00969	0.70	+0.2
1,045,365	+		CCNA_00969	0.71	-1.2
1,045,391	-		CCNA_00969	0.72	+0.8
1,045,402	+		CCNA_00969	0.73	+1.1
1,045,406	-		CCNA_00969	0.73	+0.9
1,045,462	+		CCNA_00969	0.76	-0.8
1,045,467	+		CCNA_00969	0.76	-0.6
1,045,489	-		CCNA_00969	0.78	+0.7
1,045,513	+		CCNA_00969	0.79	+0.6
1,045,531	-		CCNA_00969	0.80	-0.5
1,045,556	-		CCNA_00969	0.81	-1.4
1,045,564	+		CCNA_00969	0.82	-2.8
1,045,592	+		CCNA_00969	0.83	-0.7
1,045,610	-		CCNA_00969	0.84	-0.0
1,045,610	-		CCNA_00969	0.84	+1.3
1,045,638	+		CCNA_00969	0.86	-0.8
1,045,638	+		CCNA_00969	0.86	+0.2
1,045,646	-		CCNA_00969	0.87	-0.4
1,045,657	+		CCNA_00969	0.87	-0.6
1,045,665	-		CCNA_00969	0.88	+0.4
1,045,667	-		CCNA_00969	0.88	+0.5
1,045,679	+		CCNA_00969	0.88	-0.9
1,045,716	+				+0.6
1,045,759	+				-0.8
1,045,791	+				+1.6
1,045,791	+				+1.0
1,045,799	-				-0.1
1,045,836	+				+0.8
1,045,860	-				+1.6
1,045,865	-				+0.8
1,045,877	+				-0.3
1,045,894	+				+0.4
1,046,060	+				-2.1
1,046,076	+				-0.3
1,046,084	-				+0.9
1,046,097	+				+1.0
1,046,097	+				-0.7
1,046,097	+				-0.1
1,046,109	+				+1.1
1,046,115	-				-0.0
1,046,117	-				+0.2
1,046,117	-				-0.9
1,046,117	-				-0.3
1,046,127	+				+0.3
1,046,135	-				-0.9
1,046,140	-				+1.1
1,046,159	-				+2.4
1,046,185	-				+1.8
1,046,194	-				+0.8
1,046,201	+				-0.9
1,046,201	+				+0.9
1,046,241	+				+1.3
1,046,241	+				+0.8
1,046,241	+				-0.5
1,046,249	-				-0.2
1,046,249	-				-0.2
1,046,249	-				+0.1
1,046,254	-				+0.8
1,046,263	+				-1.1
1,046,298	-				+2.2
1,046,317	+				+1.7
1,046,317	+				+1.2
1,046,317	+				+0.1
1,046,325	-				+1.1
1,046,367	+				-1.4
1,046,381	+				+1.2
1,046,392	+				-0.0
1,046,397	+				+0.6
1,046,397	+				+1.8
1,046,397	+				-1.4
1,046,399	-				-0.9
1,046,405	-				+0.2
1,046,405	-				+0.8
1,046,415	+				+1.0
1,046,429	+		CCNA_00970	0.10	-0.1
1,046,466	+		CCNA_00970	0.11	+0.4
1,046,479	-		CCNA_00970	0.12	+0.2
1,046,521	+		CCNA_00970	0.13	-1.5
1,046,536	+		CCNA_00970	0.14	-2.0
1,046,544	-		CCNA_00970	0.14	-1.4
1,046,544	-		CCNA_00970	0.14	-0.8
1,046,568	+		CCNA_00970	0.15	+1.2
1,046,596	+		CCNA_00970	0.16	+1.6
1,046,604	-		CCNA_00970	0.16	-0.0
1,046,613	+		CCNA_00970	0.16	+0.7
1,046,613	+		CCNA_00970	0.16	+1.1
1,046,613	+		CCNA_00970	0.16	+0.3
1,046,613	+		CCNA_00970	0.16	-0.7
1,046,613	+		CCNA_00970	0.16	-1.2
1,046,613	+		CCNA_00970	0.16	+0.3
1,046,616	+		CCNA_00970	0.16	+0.9
1,046,621	-		CCNA_00970	0.17	-0.6
1,046,621	-		CCNA_00970	0.17	-1.8
1,046,621	-		CCNA_00970	0.17	+0.4
1,046,624	-		CCNA_00970	0.17	-2.0
1,046,635	+		CCNA_00970	0.17	+2.1
1,046,635	+		CCNA_00970	0.17	-0.8
1,046,679	+		CCNA_00970	0.19	-0.0
1,046,697	-		CCNA_00970	0.19	+1.0
1,046,736	-		CCNA_00970	0.20	+0.2
1,046,753	-		CCNA_00970	0.21	+0.8
1,046,760	+		CCNA_00970	0.21	+1.0
1,046,804	+		CCNA_00970	0.23	+1.2
1,046,830	+		CCNA_00970	0.24	-1.0
1,046,842	+		CCNA_00970	0.24	+2.3
1,046,842	+		CCNA_00970	0.24	+1.4
1,046,842	+		CCNA_00970	0.24	+1.4
1,046,842	+		CCNA_00970	0.24	+0.5
1,046,842	+		CCNA_00970	0.24	-0.2
1,046,842	+		CCNA_00970	0.24	-0.2
1,046,842	+		CCNA_00970	0.24	+2.2
1,046,842	+		CCNA_00970	0.24	+0.6
1,046,845	-		CCNA_00970	0.24	+0.3
1,046,857	+		CCNA_00970	0.24	+0.4
1,046,864	+		CCNA_00970	0.25	+0.4
1,046,930	+		CCNA_00970	0.27	+1.0
1,046,930	+		CCNA_00970	0.27	-0.7
1,046,930	+		CCNA_00970	0.27	+0.8
1,047,005	-		CCNA_00970	0.29	-1.4
1,047,025	-		CCNA_00970	0.30	+0.6
1,047,027	+		CCNA_00970	0.30	+0.5
1,047,035	-		CCNA_00970	0.30	+0.4
1,047,035	-		CCNA_00970	0.30	-0.5
1,047,063	-		CCNA_00970	0.31	-1.7
1,047,074	+		CCNA_00970	0.32	-0.3
1,047,083	+		CCNA_00970	0.32	+1.2
1,047,100	+		CCNA_00970	0.32	+1.1
1,047,107	-		CCNA_00970	0.33	+0.6
1,047,110	+		CCNA_00970	0.33	+1.7
1,047,110	+		CCNA_00970	0.33	+0.2
1,047,115	+		CCNA_00970	0.33	-1.2
1,047,117	-		CCNA_00970	0.33	-0.1
1,047,121	+		CCNA_00970	0.33	+2.5
1,047,121	+		CCNA_00970	0.33	+1.8
1,047,129	-		CCNA_00970	0.33	+0.2
1,047,161	-		CCNA_00970	0.34	-0.7
1,047,183	-		CCNA_00970	0.35	-0.9
1,047,184	+		CCNA_00970	0.35	+2.9
1,047,192	-		CCNA_00970	0.35	-1.2
1,047,194	-		CCNA_00970	0.36	+0.2
1,047,194	-				+1.8
1,047,218	-		CCNA_00970	0.36	-1.1
1,047,223	-		CCNA_00970	0.37	-0.0
1,047,223	-		CCNA_00970	0.37	+0.3
1,047,223	-		CCNA_00970	0.37	-0.0
1,047,293	+		CCNA_00970	0.39	+1.0
1,047,294	-		CCNA_00970	0.39	-0.2
1,047,340	-		CCNA_00970	0.40	-0.2
1,047,379	-		CCNA_00970	0.42	+0.3
1,047,413	+		CCNA_00970	0.43	+0.7
1,047,421	-		CCNA_00970	0.43	+0.7
1,047,425	+		CCNA_00970	0.43	-0.3
1,047,442	+		CCNA_00970	0.44	+1.0
1,047,471	+		CCNA_00970	0.45	-0.2
1,047,542	+		CCNA_00970	0.47	+0.9
1,047,553	+		CCNA_00970	0.47	+1.4
1,047,555	-		CCNA_00970	0.48	-0.2
1,047,588	+		CCNA_00970	0.49	+0.3
1,047,588	+		CCNA_00970	0.49	+2.3
1,047,588	+		CCNA_00970	0.49	+1.2
1,047,588	+		CCNA_00970	0.49	+0.1
1,047,588	+		CCNA_00970	0.49	+1.3
1,047,591	-		CCNA_00970	0.49	-0.1
1,047,596	-		CCNA_00970	0.49	-1.4
1,047,630	+		CCNA_00970	0.50	+1.1
1,047,682	-		CCNA_00970	0.52	+0.2
1,047,690	+		CCNA_00970	0.52	-0.4
1,047,782	-		CCNA_00970	0.55	-1.0
1,047,839	+		CCNA_00970	0.57	+0.8
1,047,839	+		CCNA_00970	0.57	+1.8
1,047,882	+		CCNA_00970	0.58	+2.6
1,047,887	+		CCNA_00970	0.58	+2.1
1,047,887	+		CCNA_00970	0.58	+2.3
1,047,887	+		CCNA_00970	0.58	+0.8
1,047,895	-		CCNA_00970	0.59	-1.2
1,047,895	-		CCNA_00970	0.59	+0.4
1,047,895	-		CCNA_00970	0.59	-1.3
1,047,897	+		CCNA_00970	0.59	+1.6
1,047,905	-		CCNA_00970	0.59	-1.9
1,047,917	+		CCNA_00970	0.59	+1.7
1,047,968	+		CCNA_00970	0.61	+2.0
1,048,015	+		CCNA_00970	0.63	+0.9
1,048,021	+		CCNA_00970	0.63	+1.6
1,048,023	-		CCNA_00970	0.63	-0.7
1,048,023	-		CCNA_00970	0.63	-1.0
1,048,024	-		CCNA_00970	0.63	-0.9
1,048,024	-		CCNA_00970	0.63	-1.5
1,048,051	+		CCNA_00970	0.64	-1.8
1,048,114	+		CCNA_00970	0.66	+2.1
1,048,114	+		CCNA_00970	0.66	+0.8
1,048,114	+		CCNA_00970	0.66	+1.8
1,048,210	+		CCNA_00970	0.69	-0.8
1,048,237	+		CCNA_00970	0.70	+0.6
1,048,267	+		CCNA_00970	0.71	+3.3
1,048,287	+		CCNA_00970	0.72	+1.1
1,048,327	+		CCNA_00970	0.73	+0.7
1,048,335	-		CCNA_00970	0.73	-0.1
1,048,335	-		CCNA_00970	0.73	+0.7
1,048,337	+		CCNA_00970	0.73	+2.1
1,048,360	+		CCNA_00970	0.74	+1.8
1,048,365	+		CCNA_00970	0.74	+0.2
1,048,385	+		CCNA_00970	0.75	+0.3
1,048,385	+		CCNA_00970	0.75	-0.5
1,048,385	+		CCNA_00970	0.75	+1.1
1,048,385	+		CCNA_00970	0.75	+0.8
1,048,393	-		CCNA_00970	0.75	-0.2
1,048,408	-		CCNA_00970	0.76	-0.7
1,048,418	-		CCNA_00970	0.76	+2.0
1,048,449	+		CCNA_00970	0.77	+0.5
1,048,455	+		CCNA_00970	0.77	+1.4
1,048,463	-		CCNA_00970	0.78	+2.3
1,048,467	-		CCNA_00970	0.78	-0.9
1,048,496	+		CCNA_00970	0.79	+1.4
1,048,496	+		CCNA_00970	0.79	+1.3
1,048,497	-		CCNA_00970	0.79	-0.7
1,048,520	+		CCNA_00970	0.79	-0.7
1,048,520	+		CCNA_00970	0.79	+0.8
1,048,528	-		CCNA_00970	0.80	-1.2
1,048,528	-		CCNA_00970	0.80	-0.8
1,048,541	+		CCNA_00970	0.80	+1.0
1,048,549	-		CCNA_00970	0.80	-0.0
1,048,623	-		CCNA_00970	0.83	+1.3
1,048,629	+		CCNA_00970	0.83	+0.9
1,048,744	+		CCNA_00970	0.87	+1.8
1,048,757	+		CCNA_00970	0.87	-0.2
1,048,762	+		CCNA_00970	0.87	+0.7
1,048,825	+		CCNA_00970	0.90	+0.3
1,048,825	+		CCNA_00970	0.90	+0.6
1,048,825	+		CCNA_00970	0.90	+0.7
1,048,832	+		CCNA_00970	0.90	+1.8
1,048,833	-		CCNA_00970	0.90	-1.3
1,048,837	+		CCNA_00970	0.90	-0.2
1,048,887	+				+0.6
1,048,895	-				-1.5
1,048,895	-				-2.0
1,048,910	+				+1.2
1,048,928	+				-0.1
1,048,973	+				+0.3
1,049,006	-				+0.6
1,049,066	-				-0.4
1,049,077	+				+1.0
1,049,084	-				-0.1
1,049,119	-				+1.2
1,049,146	+				+0.7
1,049,177	-				+0.2
1,049,213	-				-0.4
1,049,229	+				+1.6
1,049,284	+		CCNA_00971	0.15	-0.8
1,049,284	+		CCNA_00971	0.15	+1.3
1,049,318	-		CCNA_00971	0.19	+0.3
1,049,345	-		CCNA_00971	0.22	+0.9
1,049,345	-		CCNA_00971	0.22	-0.1
1,049,368	+				+1.8
1,049,368	+		CCNA_00971	0.25	+1.3
1,049,452	-		CCNA_00971	0.34	+1.3
1,049,517	+		CCNA_00971	0.41	-0.4
1,049,517	+		CCNA_00971	0.41	+1.0
1,049,519	-		CCNA_00971	0.41	+0.3
1,049,533	+		CCNA_00971	0.43	+1.6
1,049,541	-		CCNA_00971	0.44	+0.3
1,049,546	-		CCNA_00971	0.45	+0.1
1,049,561	+		CCNA_00971	0.46	+0.2
1,049,568	+		CCNA_00971	0.47	+1.6
1,049,569	-		CCNA_00971	0.47	+0.3
1,049,576	+		CCNA_00971	0.48	+1.6
1,049,576	-		CCNA_00971	0.48	-0.3
1,049,605	-		CCNA_00971	0.51	+0.4
1,049,628	+		CCNA_00971	0.54	+0.3
1,049,652	+		CCNA_00971	0.56	-0.8
1,049,657	+		CCNA_00971	0.57	-1.5
1,049,657	+		CCNA_00971	0.57	+1.8
1,049,660	-		CCNA_00971	0.57	+1.0
1,049,660	-		CCNA_00971	0.57	-0.6
1,049,665	-		CCNA_00971	0.58	-0.9
1,049,687	+		CCNA_00971	0.60	+0.8
1,049,730	+		CCNA_00971	0.65	-0.7
1,049,737	+		CCNA_00971	0.66	+1.0
1,049,744	-		CCNA_00971	0.67	+3.2
1,049,744	-		CCNA_00971	0.67	+0.4
1,049,745	-		CCNA_00971	0.67	+2.3
1,049,745	-		CCNA_00971	0.67	+0.3
1,049,794	+		CCNA_00971	0.72	+2.0
1,049,797	-		CCNA_00971	0.73	-0.9
1,049,818	+		CCNA_00971	0.75	+2.2
1,049,818	+		CCNA_00971	0.75	+0.3
1,049,818	+		CCNA_00971	0.75	+1.0
1,049,845	+		CCNA_00971	0.78	+0.0
1,049,879	+		CCNA_00971	0.82	+0.1
1,049,881	-		CCNA_00971	0.82	+0.4
1,049,924	+		CCNA_00971	0.87	-0.6
1,049,956	-				+1.6
1,049,988	+				+1.3
1,049,991	-				-0.7
1,049,991	-				+0.6
1,049,996	-				-0.3
1,050,031	-				+1.0