Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00968

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,041,429	-				-0.9
1,041,434	-				-0.7
1,041,468	+		CCNA_00967	0.11	+0.9
1,041,468	+		CCNA_00967	0.11	+0.4
1,041,481	-		CCNA_00967	0.13	-2.2
1,041,498	-		CCNA_00967	0.16	+0.8
1,041,500	+		CCNA_00967	0.16	+0.3
1,041,500	+		CCNA_00967	0.16	+1.7
1,041,507	+		CCNA_00967	0.17	+0.1
1,041,508	-		CCNA_00967	0.18	-0.9
1,041,519	-		CCNA_00967	0.19	-1.6
1,041,554	+		CCNA_00967	0.25	+1.6
1,041,562	+		CCNA_00967	0.26	+0.9
1,041,572	+		CCNA_00967	0.28	-0.9
1,041,620	+		CCNA_00967	0.36	-0.2
1,041,623	-		CCNA_00967	0.36	+0.4
1,041,623	-		CCNA_00967	0.36	-2.4
1,041,638	+		CCNA_00967	0.38	+1.3
1,041,716	-		CCNA_00967	0.51	-0.3
1,041,733	-		CCNA_00967	0.54	-1.8
1,041,744	-		CCNA_00967	0.56	-1.7
1,041,756	-		CCNA_00967	0.57	+0.7
1,041,773	-		CCNA_00967	0.60	+1.1
1,041,773	-		CCNA_00967	0.60	-0.7
1,041,779	-		CCNA_00967	0.61	-0.6
1,041,780	-		CCNA_00967	0.61	-0.5
1,041,835	+		CCNA_00967	0.70	+2.0
1,041,835	+		CCNA_00967	0.70	+1.8
1,041,891	-		CCNA_00967	0.79	+0.1
1,041,989	-				+1.9
1,041,996	+				-0.7
1,041,996	+				-0.4
1,041,996	+				-0.4
1,041,996	+				-0.6
1,041,996	+				+0.2
1,042,004	-				+0.4
1,042,004	-				-3.0
1,042,004	-				+0.1
1,042,004	-				-0.0
1,042,004	-				-0.8
1,042,004	-				+1.4
1,042,006	+				-0.9
1,042,035	+				-2.3
1,042,105	+				+1.1
1,042,105	+				-1.3
1,042,105	+				-0.1
1,042,113	-				+0.1
1,042,113	-				-0.2
1,042,113	-				+1.7
1,042,113	-				+1.6
1,042,113	-				-0.6
1,042,113	-				-1.5
1,042,113	-				-1.8
1,042,113	-				-0.8
1,042,113	-				+0.1
1,042,192	+				+0.6
1,042,244	-				-0.4
1,042,311	-				-0.4
1,042,347	+		CCNA_00968	0.12	+1.4
1,042,455	+		CCNA_00968	0.19	+2.2
1,042,494	+		CCNA_00968	0.22	+1.4
1,042,520	+		CCNA_00968	0.24	+0.8
1,042,520	+		CCNA_00968	0.24	+1.5
1,042,520	+		CCNA_00968	0.24	+0.6
1,042,520	+		CCNA_00968	0.24	+0.8
1,042,528	-		CCNA_00968	0.24	-0.8
1,042,528	-		CCNA_00968	0.24	+0.2
1,042,620	+		CCNA_00968	0.30	+1.8
1,042,620	+		CCNA_00968	0.30	+0.4
1,042,620	+		CCNA_00968	0.30	+2.5
1,042,623	-		CCNA_00968	0.31	-0.4
1,042,625	+		CCNA_00968	0.31	-0.4
1,042,625	+		CCNA_00968	0.31	+1.2
1,042,625	+		CCNA_00968	0.31	+1.0
1,042,633	-		CCNA_00968	0.31	+1.3
1,042,633	-		CCNA_00968	0.31	-2.0
1,042,656	+		CCNA_00968	0.33	+1.6
1,042,719	-		CCNA_00968	0.37	-2.1
1,042,719	-		CCNA_00968	0.37	+1.3
1,042,733	+		CCNA_00968	0.38	+2.7
1,042,761	+		CCNA_00968	0.40	+2.3
1,042,898	-		CCNA_00968	0.49	+0.7
1,042,898	-		CCNA_00968	0.49	-0.9
1,042,901	+		CCNA_00968	0.49	+0.8
1,042,919	-		CCNA_00968	0.50	+0.4
1,042,960	-		CCNA_00968	0.53	-0.8
1,042,967	+		CCNA_00968	0.54	+1.8
1,042,997	+		CCNA_00968	0.56	+0.6
1,042,997	+		CCNA_00968	0.56	+0.7
1,043,007	+		CCNA_00968	0.56	+2.1
1,043,015	-		CCNA_00968	0.57	+1.3
1,043,060	+		CCNA_00968	0.60	+0.1
1,043,060	+		CCNA_00968	0.60	+0.6
1,043,068	-		CCNA_00968	0.60	-0.4
1,043,068	-		CCNA_00968	0.60	+0.3
1,043,068	-		CCNA_00968	0.60	-0.4
1,043,069	-		CCNA_00968	0.60	+0.1
1,043,077	+		CCNA_00968	0.61	+1.9
1,043,112	+		CCNA_00968	0.63	+1.3
1,043,120	-		CCNA_00968	0.64	+0.2
1,043,127	+		CCNA_00968	0.64	+1.9
1,043,147	+		CCNA_00968	0.66	+2.2
1,043,177	-		CCNA_00968	0.68	+0.9
1,043,208	+		CCNA_00968	0.70	+1.8
1,043,208	+		CCNA_00968	0.70	-0.1
1,043,208	+		CCNA_00968	0.70	+1.0
1,043,213	+		CCNA_00968	0.70	-0.2
1,043,227	+		CCNA_00968	0.71	+1.1
1,043,245	+		CCNA_00968	0.72	+2.2
1,043,262	+		CCNA_00968	0.73	+0.6
1,043,262	+		CCNA_00968	0.73	+2.5
1,043,262	+		CCNA_00968	0.73	+2.2
1,043,264	+		CCNA_00968	0.73	+1.3
1,043,264	+		CCNA_00968	0.73	+1.5
1,043,264	+		CCNA_00968	0.73	+1.6
1,043,272	-		CCNA_00968	0.74	+0.2
1,043,303	+		CCNA_00968	0.76	+0.8
1,043,303	+		CCNA_00968	0.76	+2.3
1,043,331	-		CCNA_00968	0.78	+2.0
1,043,345	-		CCNA_00968	0.79	+1.4
1,043,353	-		CCNA_00968	0.79	-0.7
1,043,380	+		CCNA_00968	0.81	+1.4
1,043,400	+		CCNA_00968	0.82	-0.1
1,043,405	+		CCNA_00968	0.83	+0.7
1,043,408	-		CCNA_00968	0.83	-0.1
1,043,408	-		CCNA_00968	0.83	-0.2
1,043,410	+		CCNA_00968	0.83	+1.9
1,043,413	-		CCNA_00968	0.83	+0.5
1,043,413	-		CCNA_00968	0.83	+0.4
1,043,418	-		CCNA_00968	0.84	+0.3
1,043,418	-		CCNA_00968	0.84	+0.2
1,043,561	-				-2.0
1,043,573	-				+1.0
1,043,636	-				-1.3
1,043,651	+				+2.5
1,043,659	-				+1.8
1,043,666	-				+0.7
1,043,666	-				-1.0
1,043,706	+				+0.9
1,043,756	+				+1.5
1,043,766	-				-1.0
1,043,777	+				-0.2
1,043,777	+				+1.6
1,043,883	+				+1.2
1,043,889	-				-0.8
1,043,897	-				+2.6
1,043,918	+				+0.1
1,043,989	-				-0.7
1,044,049	-				+0.9
1,044,056	+				-0.9
1,044,110	+				-2.1
1,044,156	+				-1.3
1,044,178	-				+1.4
1,044,180	+				+1.6
1,044,258	+				+1.0
1,044,386	-		CCNA_00969	0.15	+0.7
1,044,412	+		CCNA_00969	0.16	+0.2
1,044,420	-		CCNA_00969	0.17	-1.1
1,044,430	-		CCNA_00969	0.17	-1.1
1,044,431	-		CCNA_00969	0.18	+0.8
1,044,494	+		CCNA_00969	0.21	-0.9
1,044,502	-		CCNA_00969	0.22	+0.2
1,044,514	+		CCNA_00969	0.22	-0.9
1,044,522	-		CCNA_00969	0.23	-0.0
1,044,526	+		CCNA_00969	0.23	-1.5
1,044,548	-		CCNA_00969	0.24	-0.8
1,044,573	+		CCNA_00969	0.26	-1.0
1,044,578	+		CCNA_00969	0.26	-0.1
1,044,578	+		CCNA_00969	0.26	-2.7
1,044,650	-		CCNA_00969	0.30	-0.5
1,044,661	+		CCNA_00969	0.31	-0.4
1,044,661	+		CCNA_00969	0.31	+0.3