Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00963

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,037,953	-		CCNA_00959	0.86	-0.5
1,037,959	+		CCNA_00959	0.87	+1.3
1,037,975	-		CCNA_00959	0.90	+0.7
1,038,000	+				-0.5
1,038,013	+				-1.0
1,038,023	-				+0.4
1,038,112	-				-0.9
1,038,115	+				-0.6
1,038,128	+		CCNA_00961	0.13	-0.9
1,038,136	-		CCNA_00961	0.15	-0.9
1,038,195	+		CCNA_00961	0.30	+1.1
1,038,195	+		CCNA_00961	0.30	+2.3
1,038,203	-		CCNA_00961	0.32	-0.8
1,038,203	-		CCNA_00961	0.32	-0.2
1,038,203	-		CCNA_00961	0.32	+0.3
1,038,248	-		CCNA_00961	0.43	-1.4
1,038,269	+		CCNA_00961	0.48	+0.7
1,038,290	-		CCNA_00961	0.53	+0.4
1,038,310	-		CCNA_00961	0.58	-0.2
1,038,338	+		CCNA_00961	0.65	+1.3
1,038,338	+		CCNA_00961	0.65	+0.7
1,038,359	+		CCNA_00961	0.70	+1.6
1,038,359	+		CCNA_00961	0.70	+2.3
1,038,450	+				+1.8
1,038,471	+				+1.6
1,038,525	-		CCNA_00962	0.10	+3.8
1,038,684	-		CCNA_00962	0.46	+3.4
1,038,780	-		CCNA_00962	0.67	+4.0
1,038,797	-		CCNA_00962	0.71	+4.4
1,038,797	-		CCNA_00962	0.71	+4.8
1,038,797	-		CCNA_00962	0.71	+3.9
1,038,797	-		CCNA_00962	0.71	+4.1
1,038,802	-		CCNA_00962	0.72	+4.3
1,038,802	-		CCNA_00962	0.72	+4.4
1,038,802	-		CCNA_00962	0.72	+4.5
1,038,802	-		CCNA_00962	0.72	+4.7
1,038,859	+		CCNA_00962	0.85	-0.9
1,038,862	-		CCNA_00962	0.85	+4.7
1,038,990	+		CCNA_00963	0.13	-0.0
1,038,995	+		CCNA_00963	0.14	-1.6
1,038,998	-		CCNA_00963	0.15	-0.2
1,039,002	-		CCNA_00963	0.16	-0.2
1,039,026	-		CCNA_00963	0.21	-1.2
1,039,039	-		CCNA_00963	0.24	+1.6
1,039,047	+		CCNA_00963	0.26	-0.8
1,039,047	+		CCNA_00963	0.26	+2.6
1,039,055	+		CCNA_00963	0.28	+0.2
1,039,100	-		CCNA_00963	0.39	-1.2
1,039,106	+		CCNA_00963	0.41	+2.0
1,039,111	+		CCNA_00963	0.42	-1.5
1,039,114	-		CCNA_00963	0.42	-1.6
1,039,116	+		CCNA_00963	0.43	-1.4
1,039,146	+		CCNA_00963	0.50	+0.8
1,039,154	-		CCNA_00963	0.52	+0.9
1,039,168	+		CCNA_00963	0.55	-0.1
1,039,171	-		CCNA_00963	0.56	-0.0
1,039,226	+		CCNA_00963	0.69	-1.9
1,039,226	+		CCNA_00963	0.69	-0.2
1,039,244	-		CCNA_00963	0.74	-1.3
1,039,286	+		CCNA_00963	0.84	-1.7
1,039,297	+		CCNA_00963	0.86	+0.3
1,039,300	-		CCNA_00963	0.87	+1.6
1,039,337	+				-0.6
1,039,337	+				-1.0
1,039,337	+				-2.6
1,039,345	-				-1.7
1,039,345	-				-0.3
1,039,345	-				+0.2
1,039,466	+				-2.1
1,039,506	-				+0.1
1,039,560	+				+1.1
1,039,568	-				+1.3
1,039,568	-				-0.6
1,039,588	-				-0.4
1,039,596	+				-1.0
1,039,654	-				-2.0
1,039,659	-		CCNA_00964	0.12	-0.6
1,039,668	+		CCNA_00964	0.22	-0.8
1,039,668	+		CCNA_00964	0.22	+0.1
1,039,676	-		CCNA_00964	0.30	+0.8
1,039,676	-		CCNA_00964	0.30	-0.8
1,039,698	+		CCNA_00964	0.54	-1.4
1,039,706	-		CCNA_00964	0.62	+0.1
1,039,802	+				-0.4
1,039,810	-				-0.6
1,039,810	-				-0.0
1,039,810	-				+0.4
1,039,810	-				-0.9
1,039,822	+				-0.3
1,039,885	-				-0.1
1,039,885	-				-0.1
1,039,886	+				+1.2
1,039,886	+				-0.9
1,039,894	-				-0.1
1,039,905	+				-0.9
1,039,912	+				-0.2
1,039,912	+				-0.6
1,039,920	-				+2.3
1,039,920	-				+0.4
1,039,942	+				+0.1
1,039,950	-				+2.2
1,039,950	-				+1.7
1,039,950	-				+1.0
1,039,956	+				+0.7
1,039,971	-				+0.3
1,039,994	-		CCNA_00965	0.11	+0.6
1,040,012	+		CCNA_00965	0.14	+0.7
1,040,020	-		CCNA_00965	0.15	+2.6
1,040,029	+		CCNA_00965	0.16	+0.4
1,040,033	+		CCNA_00965	0.17	-0.9
1,040,086	+		CCNA_00965	0.24	-1.2
1,040,089	-		CCNA_00965	0.25	+1.7
1,040,112	-		CCNA_00965	0.28	+1.7
1,040,143	-		CCNA_00965	0.33	+1.3
1,040,167	-		CCNA_00965	0.36	+0.8
1,040,172	+				+3.1
1,040,193	+		CCNA_00965	0.40	-0.1
1,040,223	+		CCNA_00965	0.44	-0.3
1,040,223	+		CCNA_00965	0.44	-3.0
1,040,231	-		CCNA_00965	0.45	+0.8
1,040,237	+		CCNA_00965	0.46	+1.3
1,040,237	+		CCNA_00965	0.46	-0.5
1,040,237	+		CCNA_00965	0.46	-0.0
1,040,245	-		CCNA_00965	0.47	+1.2
1,040,245	-		CCNA_00965	0.47	+1.1
1,040,276	-		CCNA_00965	0.52	+1.1
1,040,316	+		CCNA_00965	0.57	+0.2
1,040,316	-		CCNA_00965	0.57	+0.8
1,040,329	+		CCNA_00965	0.59	+0.4