Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00956

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,031,344	+		CCNA_00954	0.47	+4.3
1,031,344	+		CCNA_00954	0.47	+3.5
1,031,368	+		CCNA_00954	0.49	+4.6
1,031,437	+		CCNA_00954	0.54	+2.5
1,031,445	-		CCNA_00954	0.54	+3.6
1,031,445	-		CCNA_00954	0.54	+3.0
1,031,447	+		CCNA_00954	0.55	+4.0
1,031,447	+		CCNA_00954	0.55	+3.6
1,031,492	+		CCNA_00954	0.58	+4.0
1,031,516	+		CCNA_00954	0.60	+3.8
1,031,526	+		CCNA_00954	0.60	+4.1
1,031,529	-		CCNA_00954	0.61	-1.0
1,031,531	+		CCNA_00954	0.61	+3.5
1,031,531	+		CCNA_00954	0.61	+3.3
1,031,538	+		CCNA_00954	0.61	+4.4
1,031,670	+		CCNA_00954	0.71	+4.0
1,031,670	+		CCNA_00954	0.71	+4.2
1,031,670	+		CCNA_00954	0.71	+4.6
1,031,701	-		CCNA_00954	0.73	+1.9
1,031,732	+		CCNA_00954	0.75	+3.4
1,031,742	+		CCNA_00954	0.76	+4.4
1,031,755	-		CCNA_00954	0.77	+0.6
1,031,841	+		CCNA_00954	0.83	+4.5
1,031,841	+		CCNA_00954	0.83	+3.6
1,031,923	+		CCNA_00954	0.89	+4.5
1,031,923	+		CCNA_00954	0.89	+4.4
1,031,923	+		CCNA_00954	0.89	+4.2
1,031,923	+		CCNA_00954	0.89	+4.4
1,031,923	+		CCNA_00954	0.89	+4.2
1,031,925	+		CCNA_00954	0.89	+3.6
1,031,925	+		CCNA_00954	0.89	+4.4
1,031,931	-		CCNA_00954	0.90	+0.6
1,031,939	+				+4.8
1,031,980	+				+3.5
1,031,980	+				+3.7
1,032,016	+				+2.5
1,032,039	+				+3.1
1,032,047	-				+0.8
1,032,063	+				+2.2
1,032,068	+				+1.6
1,032,123	-				-0.3
1,032,159	+				+2.2
1,032,165	+				+0.8
1,032,165	+				+0.6
1,032,167	-				-0.6
1,032,173	-				-1.4
1,032,173	-				-0.0
1,032,175	+				+0.7
1,032,192	+				+0.5
1,032,199	+				+0.7
1,032,207	-				+1.0
1,032,207	-				-0.3
1,032,234	+				-0.7
1,032,371	+				+0.4
1,032,384	-				-0.4
1,032,396	+				-1.1
1,032,400	-				-1.7
1,032,464	+				+1.7
1,032,511	+				+1.8
1,032,569	+		CCNA_00956	0.11	+0.1
1,032,587	+		CCNA_00956	0.12	+0.1
1,032,594	+		CCNA_00956	0.12	+1.3
1,032,609	+		CCNA_00956	0.13	-0.7
1,032,609	+		CCNA_00956	0.13	+1.8
1,032,609	+		CCNA_00956	0.13	+1.6
1,032,617	-		CCNA_00956	0.13	-0.2
1,032,621	+		CCNA_00956	0.14	+1.5
1,032,631	+		CCNA_00956	0.14	+1.2
1,032,688	-		CCNA_00956	0.17	-1.2
1,032,688	-		CCNA_00956	0.17	+0.2
1,032,761	+		CCNA_00956	0.20	+1.1
1,032,769	-		CCNA_00956	0.21	-0.4
1,032,773	+		CCNA_00956	0.21	+0.6
1,032,811	+		CCNA_00956	0.23	+1.2
1,032,817	+		CCNA_00956	0.23	+2.4
1,032,878	-		CCNA_00956	0.26	+0.2
1,032,899	-		CCNA_00956	0.27	+1.6
1,032,939	+		CCNA_00956	0.29	-0.7
1,032,940	-		CCNA_00956	0.29	+0.2
1,033,040	+		CCNA_00956	0.33	+2.0
1,033,040	+		CCNA_00956	0.33	-0.3
1,033,065	+		CCNA_00956	0.35	-0.7
1,033,065	+		CCNA_00956	0.35	+0.5
1,033,079	-		CCNA_00956	0.35	+0.8
1,033,098	+		CCNA_00956	0.36	+0.5
1,033,119	+		CCNA_00956	0.37	+1.5
1,033,132	-		CCNA_00956	0.38	+0.3
1,033,153	+		CCNA_00956	0.39	+1.4
1,033,196	-		CCNA_00956	0.41	-0.5
1,033,216	+		CCNA_00956	0.42	+0.5
1,033,216	+		CCNA_00956	0.42	+0.0
1,033,229	-		CCNA_00956	0.42	+0.6
1,033,258	+		CCNA_00956	0.44	-0.5
1,033,262	+		CCNA_00956	0.44	-1.1
1,033,262	+		CCNA_00956	0.44	-0.3
1,033,262	+		CCNA_00956	0.44	+1.9
1,033,357	-		CCNA_00956	0.49	-1.1
1,033,417	+		CCNA_00956	0.51	+1.1
1,033,420	-		CCNA_00956	0.52	-0.7
1,033,514	-		CCNA_00956	0.56	+1.6
1,033,523	+		CCNA_00956	0.56	+1.6
1,033,523	+		CCNA_00956	0.56	+0.8
1,033,523	+		CCNA_00956	0.56	+1.7
1,033,523	+		CCNA_00956	0.56	-0.6
1,033,550	-		CCNA_00956	0.58	+1.6
1,033,574	-		CCNA_00956	0.59	-0.4
1,033,644	-		CCNA_00956	0.62	+1.4
1,033,649	-		CCNA_00956	0.62	-0.8
1,033,650	+		CCNA_00956	0.62	+2.3
1,033,650	+		CCNA_00956	0.62	+1.3
1,033,658	-		CCNA_00956	0.63	+1.6
1,033,658	-		CCNA_00956	0.63	+0.7
1,033,669	+		CCNA_00956	0.63	+2.4
1,033,674	+		CCNA_00956	0.64	+2.2
1,033,677	-		CCNA_00956	0.64	-1.4
1,033,726	+		CCNA_00956	0.66	+1.0
1,033,726	+		CCNA_00956	0.66	+1.6
1,033,726	+		CCNA_00956	0.66	-0.2
1,033,734	-		CCNA_00956	0.66	-0.3
1,033,794	+		CCNA_00956	0.69	+1.4
1,033,794	-		CCNA_00956	0.69	+1.0
1,033,794	-		CCNA_00956	0.69	+0.2
1,033,814	+		CCNA_00956	0.70	+1.4
1,033,829	+		CCNA_00956	0.71	+0.7
1,033,855	-		CCNA_00956	0.72	+0.2
1,033,878	+		CCNA_00956	0.73	+2.0
1,033,896	-		CCNA_00956	0.74	+1.1
1,033,929	+		CCNA_00956	0.76	+1.6
1,033,965	-		CCNA_00956	0.77	+0.3
1,034,056	-		CCNA_00956	0.82	+0.2
1,034,056	-		CCNA_00956	0.82	-0.9
1,034,111	+		CCNA_00956	0.84	+0.1
1,034,111	+		CCNA_00956	0.84	+0.7
1,034,119	-		CCNA_00956	0.85	-0.8
1,034,172	+		CCNA_00956	0.87	+0.6
1,034,175	-		CCNA_00956	0.87	+0.7
1,034,175	-		CCNA_00956	0.87	+0.2
1,034,177	+		CCNA_00956	0.88	+1.6
1,034,177	+		CCNA_00956	0.88	+1.1
1,034,177	+		CCNA_00956	0.88	+1.5
1,034,177	+		CCNA_00956	0.88	+2.0
1,034,177	+		CCNA_00956	0.88	+2.0
1,034,185	-		CCNA_00956	0.88	+1.0
1,034,190	+		CCNA_00956	0.88	+0.9
1,034,280	-				+3.2
1,034,286	+				+0.8
1,034,286	+				+0.1
1,034,286	+				+1.3
1,034,291	+				+1.3
1,034,320	+				-0.6
1,034,395	+				+1.4
1,034,414	+				+1.0
1,034,414	+				+1.5
1,034,414	+				+2.4
1,034,493	+				+0.5
1,034,566	+				-0.9
1,034,574	-				-0.9
1,034,574	-				-1.4
1,034,584	+				+0.8
1,034,584	+				+0.0
1,034,592	-				+0.8
1,034,594	+				-0.3
1,034,603	-				-0.1
1,034,608	-				-0.7
1,034,614	+				+0.2
1,034,629	-		CCNA_00957	0.10	+0.8
1,034,714	-		CCNA_00957	0.16	-0.8
1,034,771	+		CCNA_00957	0.20	-0.4
1,034,777	+		CCNA_00957	0.20	+0.6
1,034,777	+		CCNA_00957	0.20	+2.1
1,034,824	+		CCNA_00957	0.23	-1.4
1,034,824	+		CCNA_00957	0.23	-0.2
1,034,893	+		CCNA_00957	0.28	+0.2
1,034,911	-		CCNA_00957	0.29	-0.5
1,034,919	+		CCNA_00957	0.30	+2.8
1,034,939	+		CCNA_00957	0.31	-0.1
1,034,939	+		CCNA_00957	0.31	+0.8
1,034,939	+		CCNA_00957	0.31	+0.8
1,034,942	-		CCNA_00957	0.31	+1.4
1,034,962	+		CCNA_00957	0.33	-1.9
1,034,997	+		CCNA_00957	0.35	+0.2
1,035,037	+		CCNA_00957	0.38	+1.8
1,035,037	+		CCNA_00957	0.38	-0.5
1,035,048	+		CCNA_00957	0.38	+0.6
1,035,048	+		CCNA_00957	0.38	-0.1
1,035,065	+		CCNA_00957	0.40	+0.4
1,035,065	+		CCNA_00957	0.40	+0.7
1,035,073	-		CCNA_00957	0.40	-1.2
1,035,073	-		CCNA_00957	0.40	-0.4
1,035,073	-		CCNA_00957	0.40	+0.2
1,035,076	+		CCNA_00957	0.40	+0.7
1,035,078	-		CCNA_00957	0.40	-2.4
1,035,161	+		CCNA_00957	0.46	-0.7
1,035,206	-		CCNA_00957	0.49	-0.5
1,035,276	+		CCNA_00957	0.54	-0.8
1,035,278	+		CCNA_00957	0.54	+0.4
1,035,304	-		CCNA_00957	0.56	-0.2
1,035,322	+		CCNA_00957	0.57	-0.7
1,035,358	+				+2.8
1,035,364	+		CCNA_00957	0.60	+1.2
1,035,406	-		CCNA_00957	0.63	+0.1
1,035,426	-				+2.6