Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00954

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,029,710	+				+3.0
1,029,716	-				-0.5
1,029,743	+				+3.8
1,029,743	+				+3.2
1,029,743	+				+3.9
1,029,743	+				+2.8
1,029,743	+				+3.3
1,029,748	+		CCNA_00952	0.10	+2.9
1,029,751	-		CCNA_00952	0.11	-0.2
1,029,751	-		CCNA_00952	0.11	-0.3
1,029,765	+		CCNA_00952	0.13	+3.3
1,029,788	+		CCNA_00952	0.17	+3.7
1,029,796	-		CCNA_00952	0.18	-1.4
1,029,804	+		CCNA_00952	0.19	+3.9
1,029,804	+		CCNA_00952	0.19	+3.7
1,029,804	+		CCNA_00952	0.19	+3.2
1,029,804	+		CCNA_00952	0.19	+4.0
1,029,809	+		CCNA_00952	0.20	+2.7
1,029,809	+		CCNA_00952	0.20	+2.8
1,029,809	+		CCNA_00952	0.20	+3.3
1,029,834	+		CCNA_00952	0.24	+4.0
1,029,834	+		CCNA_00952	0.24	+3.6
1,029,834	+		CCNA_00952	0.24	+3.6
1,029,839	+		CCNA_00952	0.25	+0.3
1,029,842	-		CCNA_00952	0.25	+1.6
1,029,847	-		CCNA_00952	0.26	+1.4
1,029,897	-		CCNA_00952	0.34	+0.3
1,029,902	+		CCNA_00952	0.35	+4.2
1,029,910	+		CCNA_00952	0.36	+2.5
1,029,914	+		CCNA_00952	0.36	+3.4
1,029,922	-		CCNA_00952	0.38	+0.7
1,029,922	-		CCNA_00952	0.38	-0.2
1,029,990	+		CCNA_00952	0.48	+2.2
1,029,990	+		CCNA_00952	0.48	+2.1
1,030,016	+		CCNA_00952	0.52	+1.5
1,030,026	+		CCNA_00952	0.54	+2.4
1,030,034	-		CCNA_00952	0.55	+0.8
1,030,035	+		CCNA_00952	0.55	+2.0
1,030,090	+		CCNA_00952	0.64	+2.3
1,030,090	+		CCNA_00952	0.64	+2.4
1,030,090	+		CCNA_00952	0.64	+1.8
1,030,090	+		CCNA_00952	0.64	+1.0
1,030,098	-		CCNA_00952	0.65	-1.5
1,030,098	-		CCNA_00952	0.65	-0.2
1,030,224	+		CCNA_00952	0.85	+0.4
1,030,292	+				+1.4
1,030,387	+		CCNA_00953	0.16	+3.7
1,030,392	-		CCNA_00953	0.17	-0.2
1,030,467	+		CCNA_00953	0.40	+1.6
1,030,467	+		CCNA_00953	0.40	+2.2
1,030,475	-		CCNA_00953	0.42	+1.4
1,030,524	+		CCNA_00953	0.57	+2.7
1,030,530	+		CCNA_00953	0.59	+2.3
1,030,592	+		CCNA_00953	0.77	+3.1
1,030,600	-		CCNA_00953	0.80	-0.0
1,030,622	+		CCNA_00953	0.86	+1.5
1,030,623	+		CCNA_00953	0.86	+4.6
1,030,631	-		CCNA_00953	0.89	+0.7
1,030,661	+				+2.1
1,030,669	-				-0.8
1,030,692	+				+1.8
1,030,736	+				+3.6
1,030,736	+				+3.0
1,030,778	+				+2.1
1,030,795	+				+3.2
1,030,822	+				+3.0
1,030,827	+				+3.2
1,030,827	+				+3.6
1,030,833	+				+3.4
1,030,834	+				+3.0
1,030,834	+				+2.9
1,030,834	+				+2.8
1,030,922	+		CCNA_00954	0.16	+2.5
1,030,941	+		CCNA_00954	0.18	+2.8
1,030,964	-		CCNA_00954	0.19	-0.4
1,030,975	+		CCNA_00954	0.20	+3.9
1,031,010	+		CCNA_00954	0.23	+3.6
1,031,062	-		CCNA_00954	0.26	-0.9
1,031,130	+		CCNA_00954	0.31	+3.3
1,031,138	-		CCNA_00954	0.32	+0.6
1,031,142	+		CCNA_00954	0.32	+4.5
1,031,156	+		CCNA_00954	0.33	+3.6
1,031,173	+		CCNA_00954	0.35	+4.3
1,031,228	-		CCNA_00954	0.39	-0.4
1,031,241	+		CCNA_00954	0.39	+3.9
1,031,276	+		CCNA_00954	0.42	+4.5
1,031,344	+		CCNA_00954	0.47	+4.3
1,031,344	+		CCNA_00954	0.47	+3.5
1,031,368	+		CCNA_00954	0.49	+4.6
1,031,437	+		CCNA_00954	0.54	+2.5
1,031,445	-		CCNA_00954	0.54	+3.6
1,031,445	-		CCNA_00954	0.54	+3.0
1,031,447	+		CCNA_00954	0.55	+4.0
1,031,447	+		CCNA_00954	0.55	+3.6
1,031,492	+		CCNA_00954	0.58	+4.0
1,031,516	+		CCNA_00954	0.60	+3.8
1,031,526	+		CCNA_00954	0.60	+4.1
1,031,529	-		CCNA_00954	0.61	-1.0
1,031,531	+		CCNA_00954	0.61	+3.5
1,031,531	+		CCNA_00954	0.61	+3.3
1,031,538	+		CCNA_00954	0.61	+4.4
1,031,670	+		CCNA_00954	0.71	+4.0
1,031,670	+		CCNA_00954	0.71	+4.2
1,031,670	+		CCNA_00954	0.71	+4.6
1,031,701	-		CCNA_00954	0.73	+1.9
1,031,732	+		CCNA_00954	0.75	+3.4
1,031,742	+		CCNA_00954	0.76	+4.4
1,031,755	-		CCNA_00954	0.77	+0.6
1,031,841	+		CCNA_00954	0.83	+4.5
1,031,841	+		CCNA_00954	0.83	+3.6
1,031,923	+		CCNA_00954	0.89	+4.5
1,031,923	+		CCNA_00954	0.89	+4.4
1,031,923	+		CCNA_00954	0.89	+4.2
1,031,923	+		CCNA_00954	0.89	+4.4
1,031,923	+		CCNA_00954	0.89	+4.2
1,031,925	+		CCNA_00954	0.89	+3.6
1,031,925	+		CCNA_00954	0.89	+4.4
1,031,931	-		CCNA_00954	0.90	+0.6
1,031,939	+				+4.8
1,031,980	+				+3.5
1,031,980	+				+3.7
1,032,016	+				+2.5
1,032,039	+				+3.1
1,032,047	-				+0.8
1,032,063	+				+2.2
1,032,068	+				+1.6
1,032,123	-				-0.3
1,032,159	+				+2.2
1,032,165	+				+0.8
1,032,165	+				+0.6
1,032,167	-				-0.6
1,032,173	-				-1.4
1,032,173	-				-0.0
1,032,175	+				+0.7
1,032,192	+				+0.5
1,032,199	+				+0.7
1,032,207	-				+1.0
1,032,207	-				-0.3
1,032,234	+				-0.7
1,032,371	+				+0.4
1,032,384	-				-0.4
1,032,396	+				-1.1
1,032,400	-				-1.7
1,032,464	+				+1.7
1,032,511	+				+1.8
1,032,569	+		CCNA_00956	0.11	+0.1
1,032,587	+		CCNA_00956	0.12	+0.1
1,032,594	+		CCNA_00956	0.12	+1.3
1,032,609	+		CCNA_00956	0.13	-0.7
1,032,609	+		CCNA_00956	0.13	+1.8
1,032,609	+		CCNA_00956	0.13	+1.6
1,032,617	-		CCNA_00956	0.13	-0.2
1,032,621	+		CCNA_00956	0.14	+1.5
1,032,631	+		CCNA_00956	0.14	+1.2
1,032,688	-		CCNA_00956	0.17	-1.2
1,032,688	-		CCNA_00956	0.17	+0.2
1,032,761	+		CCNA_00956	0.20	+1.1
1,032,769	-		CCNA_00956	0.21	-0.4
1,032,773	+		CCNA_00956	0.21	+0.6
1,032,811	+		CCNA_00956	0.23	+1.2
1,032,817	+		CCNA_00956	0.23	+2.4
1,032,878	-		CCNA_00956	0.26	+0.2
1,032,899	-		CCNA_00956	0.27	+1.6
1,032,939	+		CCNA_00956	0.29	-0.7
1,032,940	-		CCNA_00956	0.29	+0.2
1,033,040	+		CCNA_00956	0.33	+2.0
1,033,040	+		CCNA_00956	0.33	-0.3
1,033,065	+		CCNA_00956	0.35	-0.7
1,033,065	+		CCNA_00956	0.35	+0.5