Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00949

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00947 and CCNA_00948 are separated by 168 nucleotidesCCNA_00948 and CCNA_00949 are separated by 20 nucleotidesCCNA_00949 and CCNA_00950 are separated by 18 nucleotides CCNA_00947: CCNA_00947 - flagellar hook protein FlgE, at 1,024,495 to 1,026,270 _00947 CCNA_00948: CCNA_00948 - CtrA inhibitory protein SciP, at 1,026,439 to 1,026,720 _00948 CCNA_00949: CCNA_00949 - hypothetical protein, at 1,026,741 to 1,026,965 _00949 CCNA_00950: CCNA_00950 - flagellar M-ring protein FliF, at 1,026,984 to 1,028,648 _00950 Position (kb) 1026 1027Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1025.830 kb on + strand, within CCNA_00947at 1025.851 kb on + strand, within CCNA_00947at 1025.852 kb on + strand, within CCNA_00947at 1025.852 kb on + strand, within CCNA_00947at 1025.862 kb on + strand, within CCNA_00947at 1025.862 kb on + strand, within CCNA_00947at 1025.870 kb on + strand, within CCNA_00947at 1025.908 kb on + strand, within CCNA_00947at 1025.925 kb on - strand, within CCNA_00947at 1025.952 kb on + strand, within CCNA_00947at 1025.952 kb on + strand, within CCNA_00947at 1025.952 kb on + strand, within CCNA_00947at 1026.019 kb on + strand, within CCNA_00947at 1026.027 kb on - strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.028 kb on + strand, within CCNA_00947at 1026.036 kb on - strand, within CCNA_00947at 1026.046 kb on - strand, within CCNA_00947at 1026.067 kb on + strand, within CCNA_00947at 1026.067 kb on + strand, within CCNA_00947at 1026.070 kb on - strand, within CCNA_00947at 1026.072 kb on + strand, within CCNA_00947at 1026.080 kb on + strand, within CCNA_00947at 1026.149 kb on + strandat 1026.149 kb on + strandat 1026.157 kb on - strandat 1026.170 kb on + strandat 1026.180 kb on + strandat 1026.180 kb on + strandat 1026.180 kb on + strandat 1026.182 kb on + strandat 1026.182 kb on + strandat 1026.182 kb on + strandat 1026.188 kb on - strandat 1026.190 kb on - strandat 1026.190 kb on - strandat 1026.334 kb on - strandat 1026.401 kb on + strandat 1026.429 kb on + strandat 1026.462 kb on + strandat 1026.487 kb on + strand, within CCNA_00948at 1026.540 kb on + strand, within CCNA_00948at 1026.594 kb on + strand, within CCNA_00948at 1026.706 kb on + strandat 1026.711 kb on + strandat 1026.714 kb on + strandat 1026.724 kb on + strandat 1026.724 kb on + strandat 1026.729 kb on - strandat 1026.732 kb on - strandat 1026.733 kb on + strandat 1026.741 kb on - strandat 1026.798 kb on - strand, within CCNA_00949at 1026.897 kb on - strand, within CCNA_00949at 1026.899 kb on + strand, within CCNA_00949at 1026.917 kb on + strand, within CCNA_00949at 1026.967 kb on - strandat 1026.970 kb on + strandat 1026.970 kb on + strandat 1026.972 kb on + strandat 1026.972 kb on + strandat 1026.972 kb on + strandat 1026.972 kb on + strandat 1026.972 kb on + strandat 1026.972 kb on + strandat 1026.980 kb on - strandat 1026.980 kb on - strandat 1027.013 kb on + strandat 1027.071 kb on + strandat 1027.071 kb on + strandat 1027.105 kb on + strandat 1027.115 kb on + strandat 1027.115 kb on + strandat 1027.115 kb on + strandat 1027.120 kb on + strandat 1027.144 kb on + strandat 1027.152 kb on - strand, within CCNA_00950at 1027.190 kb on + strand, within CCNA_00950at 1027.213 kb on + strand, within CCNA_00950at 1027.213 kb on + strand, within CCNA_00950at 1027.213 kb on + strand, within CCNA_00950at 1027.221 kb on - strand, within CCNA_00950at 1027.271 kb on + strand, within CCNA_00950at 1027.276 kb on + strand, within CCNA_00950at 1027.360 kb on + strand, within CCNA_00950at 1027.388 kb on + strand, within CCNA_00950at 1027.436 kb on + strand, within CCNA_00950at 1027.436 kb on + strand, within CCNA_00950at 1027.441 kb on + strand, within CCNA_00950at 1027.444 kb on - strand, within CCNA_00950at 1027.444 kb on - strand, within CCNA_00950at 1027.462 kb on + strand, within CCNA_00950at 1027.568 kb on + strand, within CCNA_00950at 1027.568 kb on - strand, within CCNA_00950at 1027.606 kb on + strand, within CCNA_00950at 1027.606 kb on + strand, within CCNA_00950at 1027.653 kb on + strand, within CCNA_00950at 1027.653 kb on + strand, within CCNA_00950at 1027.653 kb on + strand, within CCNA_00950at 1027.656 kb on - strand, within CCNA_00950at 1027.682 kb on - strand, within CCNA_00950at 1027.748 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.764 kb on + strand, within CCNA_00950at 1027.829 kb on + strand, within CCNA_00950at 1027.834 kb on + strand, within CCNA_00950at 1027.924 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.950 kb on + strand, within CCNA_00950at 1027.955 kb on + strand, within CCNA_00950at 1027.958 kb on - strand, within CCNA_00950at 1027.958 kb on - strand, within CCNA_00950at 1027.958 kb on - strand, within CCNA_00950

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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1,025,830 + CCNA_00947 0.75 +3.5
1,025,851 + CCNA_00947 0.76 +3.2
1,025,852 + CCNA_00947 0.76 +2.7
1,025,852 + CCNA_00947 0.76 +3.1
1,025,862 + CCNA_00947 0.77 +3.6
1,025,862 + CCNA_00947 0.77 +2.9
1,025,870 + CCNA_00947 0.77 +3.3
1,025,908 + CCNA_00947 0.80 +3.7
1,025,925 - CCNA_00947 0.81 -2.9
1,025,952 + CCNA_00947 0.82 +4.0
1,025,952 + CCNA_00947 0.82 +3.4
1,025,952 + CCNA_00947 0.82 +3.6
1,026,019 + CCNA_00947 0.86 +4.4
1,026,027 - CCNA_00947 0.86 -0.1
1,026,028 + CCNA_00947 0.86 +3.9
1,026,028 + CCNA_00947 0.86 +4.2
1,026,028 + CCNA_00947 0.86 +4.2
1,026,028 + CCNA_00947 0.86 +4.5
1,026,036 - CCNA_00947 0.87 +2.0
1,026,046 - CCNA_00947 0.87 +1.7
1,026,067 + CCNA_00947 0.89 +3.8
1,026,067 + CCNA_00947 0.89 +3.9
1,026,070 - CCNA_00947 0.89 +1.4
1,026,072 + CCNA_00947 0.89 +4.0
1,026,080 + CCNA_00947 0.89 +3.7
1,026,149 + +3.6
1,026,149 + +4.0
1,026,157 - -0.7
1,026,170 + +3.7
1,026,180 + +3.0
1,026,180 + +3.7
1,026,180 + +3.7
1,026,182 + +3.7
1,026,182 + +3.3
1,026,182 + +3.4
1,026,188 - +1.0
1,026,190 - -0.6
1,026,190 - -0.9
1,026,334 - -0.7
1,026,401 + +1.6
1,026,429 + +1.2
1,026,462 + +2.7
1,026,487 + CCNA_00948 0.17 +2.1
1,026,540 + CCNA_00948 0.36 +1.2
1,026,594 + CCNA_00948 0.55 +1.4
1,026,706 + +3.9
1,026,711 + +4.2
1,026,714 + +3.7
1,026,724 + +3.9
1,026,724 + +4.6
1,026,729 - -0.6
1,026,732 - +1.0
1,026,733 + +3.8
1,026,741 - +0.1
1,026,798 - CCNA_00949 0.25 +0.4
1,026,897 - CCNA_00949 0.69 +0.8
1,026,899 + CCNA_00949 0.70 +3.5
1,026,917 + CCNA_00949 0.78 +0.7
1,026,967 - -0.4
1,026,970 + +1.8
1,026,970 + +1.0
1,026,972 + +2.1
1,026,972 + +2.8
1,026,972 + +2.0
1,026,972 + +1.6
1,026,972 + +1.4
1,026,972 + +1.1
1,026,980 - -0.7
1,026,980 - -0.9
1,027,013 + +2.0
1,027,071 + +3.0
1,027,071 + +3.7
1,027,105 + +2.6
1,027,115 + +1.7
1,027,115 + -1.0
1,027,115 + +3.4
1,027,120 + +3.2
1,027,144 + +3.2
1,027,152 - CCNA_00950 0.10 +2.2
1,027,190 + CCNA_00950 0.12 +3.0
1,027,213 + CCNA_00950 0.14 +3.2
1,027,213 + CCNA_00950 0.14 +4.4
1,027,213 + CCNA_00950 0.14 +4.3
1,027,221 - CCNA_00950 0.14 +0.4
1,027,271 + CCNA_00950 0.17 +3.3
1,027,276 + CCNA_00950 0.18 +4.3
1,027,360 + CCNA_00950 0.23 +4.4
1,027,388 + CCNA_00950 0.24 +3.4
1,027,436 + CCNA_00950 0.27 +3.1
1,027,436 + CCNA_00950 0.27 +3.6
1,027,441 + CCNA_00950 0.27 +4.2
1,027,444 - CCNA_00950 0.28 +0.4
1,027,444 - CCNA_00950 0.28 -0.4
1,027,462 + CCNA_00950 0.29 +3.9
1,027,568 + CCNA_00950 0.35 +3.1
1,027,568 - CCNA_00950 0.35 -1.3
1,027,606 + CCNA_00950 0.37 +3.3
1,027,606 + CCNA_00950 0.37 +4.0
1,027,653 + CCNA_00950 0.40 +3.9
1,027,653 + CCNA_00950 0.40 +4.1
1,027,653 + CCNA_00950 0.40 +4.1
1,027,656 - CCNA_00950 0.40 +2.4
1,027,682 - CCNA_00950 0.42 +1.8
1,027,748 + CCNA_00950 0.46 +3.3
1,027,764 + CCNA_00950 0.47 +2.1
1,027,764 + CCNA_00950 0.47 +1.1
1,027,764 + CCNA_00950 0.47 -0.3
1,027,764 + CCNA_00950 0.47 +2.4
1,027,829 + CCNA_00950 0.51 +4.3
1,027,834 + CCNA_00950 0.51 +4.0
1,027,924 + CCNA_00950 0.56 +3.9
1,027,950 + CCNA_00950 0.58 +4.9
1,027,950 + CCNA_00950 0.58 +4.3
1,027,950 + CCNA_00950 0.58 +4.2
1,027,950 + CCNA_00950 0.58 +4.1
1,027,950 + CCNA_00950 0.58 +3.8
1,027,950 + CCNA_00950 0.58 +4.8
1,027,950 + CCNA_00950 0.58 +4.8
1,027,950 + CCNA_00950 0.58 +4.3
1,027,955 + CCNA_00950 0.58 +2.6
1,027,958 - CCNA_00950 0.58 +0.5
1,027,958 - CCNA_00950 0.58 +0.5
1,027,958 - CCNA_00950 0.58 +0.6

Or see this region's nucleotide sequence