Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00920

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00918 and CCNA_00919 are separated by 37 nucleotidesCCNA_00919 and CCNA_00920 overlap by 4 nucleotidesCCNA_00920 and CCNA_00921 are separated by 167 nucleotides CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205 _00918 CCNA_00919: CCNA_00919 - hypothetical protein, at 996,243 to 996,467 _00919 CCNA_00920: CCNA_00920 - hypothetical protein, at 996,464 to 997,576 _00920 CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499 _00921 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 996.210 kb on + strandat 996.347 kb on + strand, within CCNA_00919at 996.413 kb on + strand, within CCNA_00919at 996.422 kb on + strand, within CCNA_00919at 996.432 kb on + strand, within CCNA_00919at 996.697 kb on + strand, within CCNA_00920at 996.697 kb on + strand, within CCNA_00920at 996.697 kb on + strand, within CCNA_00920at 996.760 kb on + strand, within CCNA_00920at 996.760 kb on + strand, within CCNA_00920at 996.808 kb on + strand, within CCNA_00920at 997.013 kb on - strand, within CCNA_00920at 997.146 kb on + strand, within CCNA_00920at 997.195 kb on + strand, within CCNA_00920at 997.211 kb on - strand, within CCNA_00920at 997.489 kb on + strandat 997.489 kb on + strandat 997.499 kb on - strandat 997.524 kb on + strandat 997.524 kb on + strandat 997.570 kb on + strandat 997.573 kb on - strandat 997.645 kb on + strandat 997.650 kb on + strandat 997.653 kb on - strandat 997.667 kb on - strandat 997.669 kb on + strandat 997.677 kb on - strandat 997.715 kb on - strandat 997.740 kb on + strandat 997.740 kb on + strandat 997.740 kb on + strandat 997.748 kb on - strandat 997.749 kb on - strandat 997.755 kb on - strandat 997.795 kb on - strandat 997.881 kb on + strand, within CCNA_00921at 997.881 kb on + strand, within CCNA_00921at 997.887 kb on + strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.914 kb on - strand, within CCNA_00921at 997.921 kb on - strand, within CCNA_00921at 997.921 kb on - strand, within CCNA_00921at 997.924 kb on - strand, within CCNA_00921at 997.941 kb on + strand, within CCNA_00921at 997.949 kb on + strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.949 kb on - strand, within CCNA_00921at 997.986 kb on - strand, within CCNA_00921at 998.000 kb on - strand, within CCNA_00921at 998.103 kb on + strand, within CCNA_00921at 998.132 kb on + strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.188 kb on - strand, within CCNA_00921at 998.191 kb on + strand, within CCNA_00921at 998.202 kb on + strand, within CCNA_00921at 998.246 kb on - strand, within CCNA_00921at 998.247 kb on - strand, within CCNA_00921at 998.264 kb on + strand, within CCNA_00921at 998.270 kb on + strand, within CCNA_00921at 998.270 kb on + strand, within CCNA_00921at 998.330 kb on - strand, within CCNA_00921at 998.395 kb on + strand, within CCNA_00921at 998.395 kb on + strand, within CCNA_00921at 998.396 kb on + strand, within CCNA_00921at 998.400 kb on + strand, within CCNA_00921at 998.406 kb on + strand, within CCNA_00921at 998.434 kb on + strandat 998.495 kb on + strandat 998.498 kb on - strandat 998.550 kb on + strandat 998.556 kb on + strandat 998.556 kb on + strandat 998.556 kb on + strandat 998.559 kb on - strandat 998.561 kb on + strandat 998.564 kb on - strandat 998.564 kb on - strandat 998.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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996,210 + +3.1
996,347 + CCNA_00919 0.46 +3.1
996,413 + CCNA_00919 0.76 +2.5
996,422 + CCNA_00919 0.80 +1.3
996,432 + CCNA_00919 0.84 +2.3
996,697 + CCNA_00920 0.21 +1.6
996,697 + CCNA_00920 0.21 +2.7
996,697 + CCNA_00920 0.21 +2.4
996,760 + CCNA_00920 0.27 +3.2
996,760 + CCNA_00920 0.27 +3.7
996,808 + CCNA_00920 0.31 +3.3
997,013 - CCNA_00920 0.49 +0.6
997,146 + CCNA_00920 0.61 +3.9
997,195 + CCNA_00920 0.66 +4.6
997,211 - CCNA_00920 0.67 -2.0
997,489 + +3.6
997,489 + +3.5
997,499 - +1.5
997,524 + +3.3
997,524 + +3.7
997,570 + +3.9
997,573 - +1.7
997,645 + +0.4
997,650 + -0.9
997,653 - -0.5
997,667 - -1.4
997,669 + -0.8
997,677 - +0.4
997,715 - -1.6
997,740 + -0.3
997,740 + -0.2
997,740 + -0.1
997,748 - +0.0
997,749 - -1.2
997,755 - +1.7
997,795 - -1.1
997,881 + CCNA_00921 0.18 +1.0
997,881 + CCNA_00921 0.18 +0.6
997,887 + CCNA_00921 0.19 -1.8
997,889 - CCNA_00921 0.19 +0.0
997,889 - CCNA_00921 0.19 -1.4
997,889 - CCNA_00921 0.19 -2.2
997,914 - CCNA_00921 0.22 -1.6
997,921 - CCNA_00921 0.23 -0.1
997,921 - CCNA_00921 0.23 -0.7
997,924 - CCNA_00921 0.24 +1.5
997,941 + CCNA_00921 0.26 -0.9
997,949 + CCNA_00921 0.27 +0.2
997,949 - CCNA_00921 0.27 -0.8
997,949 - CCNA_00921 0.27 -1.2
997,949 - CCNA_00921 0.27 +2.9
997,986 - CCNA_00921 0.32 +2.3
998,000 - CCNA_00921 0.34 +0.7
998,103 + CCNA_00921 0.47 +1.8
998,132 + CCNA_00921 0.51 +1.0
998,140 - CCNA_00921 0.52 -0.1
998,140 - CCNA_00921 0.52 -1.1
998,188 - CCNA_00921 0.59 +1.3
998,191 + CCNA_00921 0.59 +0.7
998,202 + CCNA_00921 0.61 +2.8
998,246 - CCNA_00921 0.66 +2.4
998,247 - CCNA_00921 0.67 -0.8
998,264 + CCNA_00921 0.69 -1.2
998,270 + CCNA_00921 0.70 +0.6
998,270 + CCNA_00921 0.70 -0.3
998,330 - CCNA_00921 0.78 -0.1
998,395 + CCNA_00921 0.86 -0.7
998,395 + CCNA_00921 0.86 -0.5
998,396 + CCNA_00921 0.86 -1.2
998,400 + CCNA_00921 0.87 +0.6
998,406 + CCNA_00921 0.88 +3.0
998,434 + +1.4
998,495 + +1.3
998,498 - -1.0
998,550 + +1.1
998,556 + -0.6
998,556 + +1.3
998,556 + +1.4
998,559 - +0.7
998,561 + +2.7
998,564 - +0.7
998,564 - -0.5
998,564 - +0.4

Or see this region's nucleotide sequence