Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00916

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00914 and CCNA_00915 are separated by 131 nucleotidesCCNA_00915 and CCNA_00916 are separated by 0 nucleotidesCCNA_00916 and CCNA_00917 overlap by 4 nucleotidesCCNA_00917 and CCNA_00918 are separated by 73 nucleotides CCNA_00914: CCNA_00914 - acetyltransferase, at 993,288 to 993,815 _00914 CCNA_00915: CCNA_00915 - Molybdenum cofactor sulfurase related protein, at 993,947 to 994,708 _00915 CCNA_00916: CCNA_00916 - toxin protein parE-1, at 994,709 to 994,999 _00916 CCNA_00917: CCNA_00917 - antitoxin protein parD-1, at 994,996 to 995,262 _00917 CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205 _00918 Position (kb) 994 995Strain fitness (log2 ratio) -2 -1 0 1 2 3at 993.718 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.723 kb on + strand, within CCNA_00914at 993.725 kb on - strand, within CCNA_00914at 993.731 kb on - strand, within CCNA_00914at 993.754 kb on + strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.762 kb on - strand, within CCNA_00914at 993.764 kb on - strandat 993.783 kb on + strandat 993.783 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.790 kb on + strandat 993.791 kb on - strandat 993.798 kb on - strandat 993.798 kb on - strandat 993.821 kb on + strandat 993.821 kb on + strandat 993.829 kb on - strandat 993.829 kb on - strandat 993.831 kb on - strandat 993.839 kb on - strandat 993.839 kb on - strandat 993.897 kb on - strandat 993.937 kb on + strandat 993.991 kb on - strandat 993.999 kb on - strandat 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.057 kb on - strand, within CCNA_00915at 994.062 kb on - strand, within CCNA_00915at 994.130 kb on + strand, within CCNA_00915at 994.135 kb on + strand, within CCNA_00915at 994.138 kb on - strand, within CCNA_00915at 994.143 kb on - strand, within CCNA_00915at 994.169 kb on + strand, within CCNA_00915at 994.188 kb on - strand, within CCNA_00915at 994.306 kb on - strand, within CCNA_00915at 994.370 kb on - strand, within CCNA_00915at 994.397 kb on - strand, within CCNA_00915at 994.411 kb on + strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.451 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.490 kb on - strand, within CCNA_00915at 994.505 kb on - strand, within CCNA_00915at 994.540 kb on + strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.629 kb on + strand, within CCNA_00915at 994.636 kb on + strandat 994.637 kb on - strandat 994.646 kb on + strandat 994.649 kb on + strandat 994.666 kb on + strandat 994.718 kb on - strandat 994.730 kb on - strandat 994.766 kb on - strand, within CCNA_00916at 994.781 kb on + strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.849 kb on - strand, within CCNA_00916at 994.915 kb on + strand, within CCNA_00916at 994.918 kb on - strand, within CCNA_00916at 994.923 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.936 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.987 kb on - strandat 995.027 kb on - strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.070 kb on + strand, within CCNA_00917at 995.113 kb on - strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.180 kb on + strand, within CCNA_00917at 995.339 kb on + strandat 995.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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993,718 + CCNA_00914 0.81 -1.0
993,723 + CCNA_00914 0.82 -1.1
993,723 + CCNA_00914 0.82 +0.4
993,723 + CCNA_00914 0.82 +2.9
993,723 + CCNA_00914 0.82 -0.2
993,723 + CCNA_00914 0.82 +0.6
993,723 + CCNA_00914 0.82 +0.8
993,725 - CCNA_00914 0.83 -0.3
993,731 - CCNA_00914 0.84 -0.8
993,754 + CCNA_00914 0.88 +1.1
993,762 - CCNA_00914 0.90 -0.4
993,762 - CCNA_00914 0.90 -1.9
993,764 - +0.7
993,783 + -0.2
993,783 + +0.4
993,790 + +0.7
993,790 + +1.9
993,790 + +0.3
993,791 - -1.9
993,798 - +1.8
993,798 - +1.9
993,821 + +0.2
993,821 + -0.7
993,829 - +1.9
993,829 - -1.0
993,831 - +1.3
993,839 - +3.5
993,839 - +3.0
993,897 - -0.0
993,937 + -0.3
993,991 - +1.4
993,999 - -0.9
994,054 + CCNA_00915 0.14 -0.1
994,054 + CCNA_00915 0.14 -0.8
994,054 + CCNA_00915 0.14 -1.7
994,057 - CCNA_00915 0.14 +0.6
994,062 - CCNA_00915 0.15 +2.3
994,130 + CCNA_00915 0.24 +1.1
994,135 + CCNA_00915 0.25 -1.1
994,138 - CCNA_00915 0.25 -0.8
994,143 - CCNA_00915 0.26 +0.2
994,169 + CCNA_00915 0.29 -0.4
994,188 - CCNA_00915 0.32 +0.3
994,306 - CCNA_00915 0.47 -2.6
994,370 - CCNA_00915 0.56 +2.6
994,397 - CCNA_00915 0.59 -0.3
994,411 + CCNA_00915 0.61 +2.9
994,419 - CCNA_00915 0.62 +1.9
994,419 - CCNA_00915 0.62 -0.6
994,450 + CCNA_00915 0.66 +0.3
994,450 + CCNA_00915 0.66 +2.7
994,450 + CCNA_00915 0.66 -0.0
994,450 + CCNA_00915 0.66 -1.1
994,450 + CCNA_00915 0.66 +0.2
994,450 + CCNA_00915 0.66 -0.7
994,451 - CCNA_00915 0.66 -0.9
994,458 - CCNA_00915 0.67 +0.7
994,458 - CCNA_00915 0.67 -0.4
994,458 - CCNA_00915 0.67 -0.8
994,458 - CCNA_00915 0.67 +1.0
994,458 - CCNA_00915 0.67 -0.2
994,490 - CCNA_00915 0.71 -1.5
994,505 - CCNA_00915 0.73 +0.4
994,540 + CCNA_00915 0.78 +0.0
994,542 - CCNA_00915 0.78 +0.7
994,542 - CCNA_00915 0.78 +0.6
994,571 + CCNA_00915 0.82 -1.1
994,571 + CCNA_00915 0.82 -2.1
994,603 + CCNA_00915 0.86 -1.6
994,603 + CCNA_00915 0.86 +0.6
994,603 + CCNA_00915 0.86 +1.7
994,611 - CCNA_00915 0.87 +0.6
994,611 - CCNA_00915 0.87 -0.4
994,629 + CCNA_00915 0.90 -0.1
994,636 + -0.4
994,637 - +1.1
994,646 + +2.1
994,649 + -0.4
994,666 + -0.8
994,718 - +1.9
994,730 - -1.2
994,766 - CCNA_00916 0.20 -1.2
994,781 + CCNA_00916 0.25 +0.7
994,789 - CCNA_00916 0.27 -0.9
994,789 - CCNA_00916 0.27 -0.5
994,814 + CCNA_00916 0.36 -0.9
994,814 + CCNA_00916 0.36 +0.5
994,822 - CCNA_00916 0.39 +0.1
994,822 - CCNA_00916 0.39 -1.1
994,822 - CCNA_00916 0.39 -0.3
994,849 - CCNA_00916 0.48 -2.5
994,915 + CCNA_00916 0.71 +0.9
994,918 - CCNA_00916 0.72 +1.3
994,923 + CCNA_00916 0.74 +0.4
994,933 + CCNA_00916 0.77 +0.6
994,933 + CCNA_00916 0.77 -1.3
994,933 + CCNA_00916 0.77 -0.8
994,936 - CCNA_00916 0.78 +0.3
994,941 - CCNA_00916 0.80 -1.3
994,941 - CCNA_00916 0.80 -0.6
994,941 - CCNA_00916 0.80 +1.4
994,944 + CCNA_00916 0.81 +0.1
994,944 + CCNA_00916 0.81 -1.2
994,952 - CCNA_00916 0.84 -0.7
994,952 - CCNA_00916 0.84 -0.5
994,952 - CCNA_00916 0.84 -0.9
994,952 - CCNA_00916 0.84 -1.8
994,952 - CCNA_00916 0.84 +1.1
994,987 - -1.0
995,027 - CCNA_00917 0.12 +1.1
995,028 + CCNA_00917 0.12 +1.1
995,028 + CCNA_00917 0.12 +0.3
995,028 + CCNA_00917 0.12 -0.8
995,028 + CCNA_00917 0.12 +0.2
995,028 + CCNA_00917 0.12 -0.3
995,028 + CCNA_00917 0.12 -0.6
995,035 - CCNA_00917 0.15 +2.3
995,035 - CCNA_00917 0.15 +1.8
995,036 - CCNA_00917 0.15 +1.2
995,036 - CCNA_00917 0.15 +0.6
995,036 - CCNA_00917 0.15 +0.5
995,036 - CCNA_00917 0.15 +1.0
995,036 - CCNA_00917 0.15 +1.1
995,036 - CCNA_00917 0.15 +0.2
995,036 - CCNA_00917 0.15 +2.1
995,070 + CCNA_00917 0.28 +1.9
995,113 - CCNA_00917 0.44 +1.0
995,146 + CCNA_00917 0.56 +1.7
995,146 + CCNA_00917 0.56 +0.4
995,180 + CCNA_00917 0.69 +1.7
995,339 + +1.7
995,339 + +1.8

Or see this region's nucleotide sequence