Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00904 and CCNA_00905 are separated by 28 nucleotides CCNA_00905 and CCNA_00906 are separated by 69 nucleotides CCNA_00906 and CCNA_00907 overlap by 4 nucleotides
CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480
_00904
CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396
_00905
CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380
_00906
CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105
_00907
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.523 kb on + strand at 984.544 kb on - strand at 984.544 kb on - strand at 984.574 kb on - strand at 984.595 kb on + strand, within CCNA_00904 at 984.628 kb on + strand, within CCNA_00904 at 984.635 kb on + strand, within CCNA_00904 at 984.643 kb on - strand, within CCNA_00904 at 984.682 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.683 kb on + strand, within CCNA_00904 at 984.706 kb on - strand, within CCNA_00904 at 984.706 kb on - strand, within CCNA_00904 at 984.734 kb on + strand, within CCNA_00904 at 984.761 kb on + strand, within CCNA_00904 at 984.769 kb on - strand, within CCNA_00904 at 984.769 kb on - strand, within CCNA_00904 at 984.798 kb on + strand, within CCNA_00904 at 984.813 kb on - strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.827 kb on + strand, within CCNA_00904 at 984.832 kb on + strand, within CCNA_00904 at 984.835 kb on - strand, within CCNA_00904 at 984.841 kb on + strand, within CCNA_00904 at 984.841 kb on + strand, within CCNA_00904 at 984.842 kb on + strand, within CCNA_00904 at 984.854 kb on + strand, within CCNA_00904 at 984.854 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.859 kb on + strand, within CCNA_00904 at 984.862 kb on - strand, within CCNA_00904 at 984.862 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.867 kb on - strand, within CCNA_00904 at 984.874 kb on - strand, within CCNA_00904 at 984.897 kb on + strand, within CCNA_00904 at 984.938 kb on - strand, within CCNA_00904 at 984.990 kb on + strand, within CCNA_00904 at 984.990 kb on + strand, within CCNA_00904 at 985.030 kb on + strand, within CCNA_00904 at 985.035 kb on + strand, within CCNA_00904 at 985.072 kb on + strand, within CCNA_00904 at 985.080 kb on - strand, within CCNA_00904 at 985.082 kb on + strand at 985.096 kb on + strand, within CCNA_00904 at 985.096 kb on + strand, within CCNA_00904 at 985.104 kb on - strand, within CCNA_00904 at 985.104 kb on - strand, within CCNA_00904 at 985.117 kb on + strand, within CCNA_00904 at 985.264 kb on + strand, within CCNA_00904 at 985.271 kb on + strand, within CCNA_00904 at 985.278 kb on + strand, within CCNA_00904 at 985.296 kb on + strand, within CCNA_00904 at 985.309 kb on - strand, within CCNA_00904 at 985.323 kb on - strand, within CCNA_00904 at 985.345 kb on - strand, within CCNA_00904 at 985.366 kb on + strand, within CCNA_00904 at 985.385 kb on - strand at 985.421 kb on + strand at 985.426 kb on + strand at 985.429 kb on - strand at 985.447 kb on - strand at 985.463 kb on - strand at 985.467 kb on + strand at 985.475 kb on + strand at 985.475 kb on + strand at 985.483 kb on - strand at 985.485 kb on + strand at 985.492 kb on + strand at 985.497 kb on + strand at 985.500 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.505 kb on - strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.507 kb on + strand at 985.514 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.515 kb on - strand at 985.519 kb on + strand at 985.521 kb on - strand at 985.567 kb on - strand at 985.567 kb on - strand at 985.570 kb on - strand at 985.607 kb on + strand, within CCNA_00905 at 985.607 kb on + strand, within CCNA_00905 at 985.673 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.678 kb on + strand, within CCNA_00905 at 985.696 kb on - strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.798 kb on + strand, within CCNA_00905 at 985.806 kb on - strand, within CCNA_00905 at 985.849 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.854 kb on + strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.862 kb on - strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.873 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.896 kb on + strand, within CCNA_00905 at 985.904 kb on - strand, within CCNA_00905 at 985.944 kb on + strand, within CCNA_00905 at 985.956 kb on - strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.966 kb on + strand, within CCNA_00905 at 985.971 kb on + strand, within CCNA_00905 at 986.012 kb on + strand, within CCNA_00905 at 986.029 kb on + strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.037 kb on - strand, within CCNA_00905 at 986.044 kb on + strand, within CCNA_00905 at 986.052 kb on - strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.109 kb on + strand, within CCNA_00905 at 986.113 kb on + strand, within CCNA_00905 at 986.128 kb on - strand, within CCNA_00905 at 986.138 kb on + strand, within CCNA_00905 at 986.166 kb on + strand, within CCNA_00905 at 986.177 kb on + strand, within CCNA_00905 at 986.229 kb on - strand, within CCNA_00905 at 986.309 kb on - strand at 986.338 kb on + strand at 986.338 kb on + strand at 986.372 kb on + strand at 986.380 kb on - strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.391 kb on + strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.399 kb on - strand at 986.427 kb on + strand at 986.427 kb on - strand at 986.434 kb on - strand at 986.448 kb on - strand at 986.463 kb on + strand at 986.519 kb on + strand at 986.532 kb on - strand at 986.552 kb on - strand at 986.565 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.570 kb on - strand, within CCNA_00906 at 986.583 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.602 kb on + strand, within CCNA_00906 at 986.650 kb on - strand, within CCNA_00906 at 986.666 kb on - strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.736 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.761 kb on + strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.769 kb on - strand, within CCNA_00906 at 986.776 kb on - strand, within CCNA_00906 at 986.794 kb on + strand, within CCNA_00906 at 986.806 kb on + strand, within CCNA_00906 at 986.814 kb on - strand, within CCNA_00906 at 986.814 kb on - strand at 986.879 kb on + strand, within CCNA_00906 at 986.887 kb on - strand, within CCNA_00906 at 986.933 kb on + strand, within CCNA_00906 at 986.941 kb on - strand, within CCNA_00906 at 986.948 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.972 kb on + strand, within CCNA_00906 at 986.980 kb on - strand, within CCNA_00906 at 987.001 kb on + strand, within CCNA_00906 at 987.009 kb on - strand, within CCNA_00906 at 987.028 kb on + strand, within CCNA_00906 at 987.030 kb on - strand, within CCNA_00906 at 987.039 kb on + strand, within CCNA_00906 at 987.060 kb on - strand, within CCNA_00906 at 987.067 kb on - strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.074 kb on + strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.095 kb on - strand, within CCNA_00906 at 987.127 kb on + strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.135 kb on - strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.142 kb on + strand, within CCNA_00906 at 987.144 kb on + strand, within CCNA_00906 at 987.150 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.152 kb on - strand, within CCNA_00906 at 987.157 kb on - strand, within CCNA_00906 at 987.172 kb on - strand, within CCNA_00906 at 987.231 kb on - strand, within CCNA_00906 at 987.242 kb on + strand, within CCNA_00906 at 987.247 kb on - strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.259 kb on + strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.267 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.282 kb on - strand, within CCNA_00906 at 987.301 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.305 kb on + strand at 987.310 kb on + strand at 987.313 kb on - strand at 987.322 kb on + strand at 987.330 kb on - strand at 987.359 kb on + strand at 987.372 kb on - strand at 987.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 984,523 + +1.0 984,544 - +0.0 984,544 - -0.9 984,574 - +0.1 984,595 + CCNA_00904 0.11 -1.1 984,628 + CCNA_00904 0.15 +0.0 984,635 + CCNA_00904 0.15 -0.9 984,643 - CCNA_00904 0.16 -0.5 984,682 + CCNA_00904 0.20 -0.1 984,683 + CCNA_00904 0.20 +0.4 984,683 + CCNA_00904 0.20 +0.0 984,706 - CCNA_00904 0.22 -0.6 984,706 - CCNA_00904 0.22 -1.7 984,734 + CCNA_00904 0.25 +0.0 984,761 + CCNA_00904 0.28 -1.1 984,769 - CCNA_00904 0.29 -0.9 984,769 - CCNA_00904 0.29 +0.2 984,798 + CCNA_00904 0.32 +0.0 984,813 - CCNA_00904 0.33 -0.0 984,827 + CCNA_00904 0.35 -0.9 984,827 + CCNA_00904 0.35 +0.9 984,832 + CCNA_00904 0.35 -0.9 984,835 - CCNA_00904 0.35 +0.9 984,841 + CCNA_00904 0.36 -0.5 984,841 + CCNA_00904 0.36 +0.1 984,842 + CCNA_00904 0.36 +1.7 984,854 + CCNA_00904 0.37 -0.2 984,854 + CCNA_00904 0.37 +0.2 984,859 + CCNA_00904 0.38 -0.9 984,859 + CCNA_00904 0.38 -0.9 984,859 + CCNA_00904 0.38 +0.1 984,862 - CCNA_00904 0.38 -0.6 984,862 - CCNA_00904 0.38 +0.1 984,867 - CCNA_00904 0.39 -0.1 984,867 - CCNA_00904 0.39 +1.1 984,867 - CCNA_00904 0.39 -1.6 984,867 - CCNA_00904 0.39 +0.4 984,867 - CCNA_00904 0.39 +0.0 984,867 - CCNA_00904 0.39 -1.2 984,874 - CCNA_00904 0.39 -0.4 984,897 + CCNA_00904 0.42 +0.3 984,938 - CCNA_00904 0.46 +0.6 984,990 + CCNA_00904 0.51 +0.7 984,990 + CCNA_00904 0.51 -0.7 985,030 + CCNA_00904 0.55 -0.5 985,035 + CCNA_00904 0.55 -0.7 985,072 + CCNA_00904 0.59 +1.9 985,080 - CCNA_00904 0.60 +1.5 985,082 + +1.7 985,096 + CCNA_00904 0.61 +3.3 985,096 + CCNA_00904 0.61 -0.3 985,104 - CCNA_00904 0.62 +1.5 985,104 - CCNA_00904 0.62 -0.5 985,117 + CCNA_00904 0.64 -1.4 985,264 + CCNA_00904 0.78 -1.5 985,271 + CCNA_00904 0.79 -0.5 985,278 + CCNA_00904 0.80 +0.6 985,296 + CCNA_00904 0.81 -2.1 985,309 - CCNA_00904 0.83 -0.2 985,323 - CCNA_00904 0.84 +1.1 985,345 - CCNA_00904 0.86 +1.1 985,366 + CCNA_00904 0.88 -0.4 985,385 - -0.3 985,421 + +2.3 985,426 + -0.2 985,429 - -0.8 985,447 - +1.1 985,463 - -1.0 985,467 + +0.6 985,475 + -1.0 985,475 + +1.4 985,483 - -1.2 985,485 + +1.0 985,492 + +0.9 985,497 + +1.4 985,500 - +0.9 985,505 - -0.9 985,505 - +2.7 985,505 - +0.3 985,507 + +0.6 985,507 + +0.1 985,507 + +0.9 985,507 + -0.3 985,507 + +0.4 985,507 + +0.0 985,507 + +0.2 985,507 + +0.9 985,507 + -0.6 985,507 + +0.8 985,507 + +2.7 985,507 + +0.5 985,507 + -0.4 985,507 + +1.8 985,507 + +1.1 985,507 + +0.6 985,507 + +0.4 985,507 + +0.5 985,507 + -0.6 985,514 - +0.4 985,515 - -1.3 985,515 - -0.3 985,515 - -0.1 985,515 - -0.7 985,515 - +0.2 985,515 - -1.1 985,515 - +0.3 985,515 - -0.4 985,515 - -1.1 985,515 - -0.5 985,515 - -0.3 985,515 - -0.4 985,519 + -0.4 985,521 - -0.3 985,567 - -1.5 985,567 - -0.8 985,570 - +0.5 985,607 + CCNA_00905 0.11 -0.3 985,607 + CCNA_00905 0.11 -0.9 985,673 + CCNA_00905 0.18 -1.2 985,678 + CCNA_00905 0.19 +1.4 985,678 + CCNA_00905 0.19 -0.3 985,696 - CCNA_00905 0.21 -0.8 985,798 + CCNA_00905 0.33 +1.7 985,798 + CCNA_00905 0.33 -0.8 985,806 - CCNA_00905 0.33 -0.7 985,849 + CCNA_00905 0.38 -1.4 985,854 + CCNA_00905 0.39 -1.3 985,854 + CCNA_00905 0.39 -1.5 985,854 + CCNA_00905 0.39 -0.9 985,862 - CCNA_00905 0.40 +0.8 985,862 - CCNA_00905 0.40 -0.7 985,862 - CCNA_00905 0.40 -1.5 985,862 - CCNA_00905 0.40 +0.0 985,873 + CCNA_00905 0.41 -0.0 985,873 + CCNA_00905 0.41 +0.7 985,896 + CCNA_00905 0.44 -0.8 985,896 + CCNA_00905 0.44 -1.3 985,904 - CCNA_00905 0.44 -0.5 985,944 + CCNA_00905 0.49 -1.2 985,956 - CCNA_00905 0.50 +0.1 985,966 + CCNA_00905 0.51 +0.1 985,966 + CCNA_00905 0.51 -0.7 985,971 + CCNA_00905 0.52 -1.5 986,012 + CCNA_00905 0.57 -1.7 986,029 + CCNA_00905 0.59 +0.3 986,037 - CCNA_00905 0.59 +2.3 986,037 - CCNA_00905 0.59 -0.7 986,037 - CCNA_00905 0.59 -0.7 986,044 + CCNA_00905 0.60 -2.4 986,052 - CCNA_00905 0.61 +2.1 986,109 + CCNA_00905 0.68 -2.0 986,109 + CCNA_00905 0.68 +0.9 986,113 + CCNA_00905 0.68 +0.5 986,128 - CCNA_00905 0.70 +1.8 986,138 + CCNA_00905 0.71 -1.7 986,166 + CCNA_00905 0.74 +0.1 986,177 + CCNA_00905 0.75 +1.8 986,229 - CCNA_00905 0.81 +0.9 986,309 - -0.3 986,338 + +0.5 986,338 + -1.2 986,372 + -0.6 986,380 - -0.3 986,391 + +1.1 986,391 + -0.3 986,391 + +1.3 986,391 + -1.2 986,399 - +0.3 986,399 - -0.4 986,399 - +0.1 986,427 + -1.0 986,427 - -0.1 986,434 - +0.7 986,448 - +1.3 986,463 + +0.5 986,519 + +2.7 986,532 - +0.4 986,552 - +1.1 986,565 - CCNA_00906 0.11 +0.2 986,570 - CCNA_00906 0.11 +0.2 986,570 - CCNA_00906 0.11 +1.7 986,570 - CCNA_00906 0.11 +0.2 986,583 + CCNA_00906 0.13 +1.9 986,602 + CCNA_00906 0.15 +1.7 986,602 + CCNA_00906 0.15 -0.7 986,650 - CCNA_00906 0.20 -0.5 986,666 - CCNA_00906 0.22 +0.0 986,736 + CCNA_00906 0.30 -0.5 986,736 + CCNA_00906 0.30 -0.4 986,761 + CCNA_00906 0.32 +1.1 986,761 + CCNA_00906 0.32 -0.6 986,769 - CCNA_00906 0.33 -0.7 986,769 - CCNA_00906 0.33 +0.0 986,769 - CCNA_00906 0.33 +0.1 986,769 - CCNA_00906 0.33 -0.6 986,769 - CCNA_00906 0.33 +2.7 986,776 - CCNA_00906 0.34 -0.1 986,794 + CCNA_00906 0.36 +1.5 986,806 + CCNA_00906 0.37 +0.4 986,814 - CCNA_00906 0.38 -2.2 986,814 - +1.9 986,879 + CCNA_00906 0.45 +1.2 986,887 - CCNA_00906 0.46 -1.2 986,933 + CCNA_00906 0.51 -0.3 986,941 - CCNA_00906 0.52 -0.8 986,948 + CCNA_00906 0.53 -0.4 986,972 + CCNA_00906 0.55 +2.7 986,972 + CCNA_00906 0.55 -0.3 986,972 + CCNA_00906 0.55 -2.0 986,972 + CCNA_00906 0.55 -0.3 986,972 + CCNA_00906 0.55 +0.7 986,980 - CCNA_00906 0.56 +0.4 987,001 + CCNA_00906 0.58 +0.0 987,009 - CCNA_00906 0.59 -1.5 987,028 + CCNA_00906 0.61 -1.0 987,030 - CCNA_00906 0.62 +2.3 987,039 + CCNA_00906 0.63 -1.9 987,060 - CCNA_00906 0.65 -0.4 987,067 - CCNA_00906 0.66 +0.8 987,074 + CCNA_00906 0.66 +0.9 987,074 + CCNA_00906 0.66 -1.4 987,095 - CCNA_00906 0.69 +0.1 987,095 - CCNA_00906 0.69 -0.9 987,095 - CCNA_00906 0.69 -0.9 987,095 - CCNA_00906 0.69 -1.6 987,127 + CCNA_00906 0.72 -0.1 987,135 - CCNA_00906 0.73 +0.6 987,135 - CCNA_00906 0.73 -0.2 987,135 - CCNA_00906 0.73 -0.3 987,142 + CCNA_00906 0.74 +0.8 987,142 + CCNA_00906 0.74 -0.4 987,144 + CCNA_00906 0.74 +1.7 987,150 - CCNA_00906 0.75 -0.5 987,152 - CCNA_00906 0.75 -1.5 987,152 - CCNA_00906 0.75 -0.6 987,157 - CCNA_00906 0.76 +3.0 987,172 - CCNA_00906 0.77 -0.6 987,231 - CCNA_00906 0.84 -0.6 987,242 + CCNA_00906 0.85 -1.5 987,247 - CCNA_00906 0.85 +0.4 987,259 + CCNA_00906 0.87 -0.2 987,259 + CCNA_00906 0.87 +0.0 987,259 + CCNA_00906 0.87 +1.3 987,267 - CCNA_00906 0.88 +0.6 987,267 - CCNA_00906 0.88 +1.7 987,267 - CCNA_00906 0.88 -0.7 987,267 - CCNA_00906 0.88 +0.1 987,282 - CCNA_00906 0.89 -0.5 987,282 - CCNA_00906 0.89 -0.9 987,282 - CCNA_00906 0.89 +0.9 987,301 + +0.1 987,305 + +0.3 987,305 + +1.7 987,305 + +0.8 987,310 + +1.7 987,313 - +0.4 987,322 + -2.2 987,330 - +0.4 987,359 + +1.5 987,372 - -1.2 987,374 + -2.1
Or see this region's nucleotide sequence