Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00870

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00869 and CCNA_00870 are separated by 65 nucleotidesCCNA_00870 and CCNA_00871 are separated by 19 nucleotidesCCNA_00871 and CCNA_00872 overlap by 4 nucleotides CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383 _00869 CCNA_00870: CCNA_00870 - hypothetical protein, at 950,449 to 950,886 _00870 CCNA_00871: CCNA_00871 - carbon-nitrogen hydrolase family protein, at 950,906 to 951,757 _00871 CCNA_00872: CCNA_00872 - glutaredoxin, at 951,754 to 952,008 _00872 Position (kb) 950 951Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 949.469 kb on - strand, within CCNA_00869at 949.469 kb on - strand, within CCNA_00869at 949.497 kb on + strand, within CCNA_00869at 949.546 kb on - strand, within CCNA_00869at 949.548 kb on + strandat 949.548 kb on + strand, within CCNA_00869at 949.548 kb on + strand, within CCNA_00869at 949.582 kb on + strand, within CCNA_00869at 949.590 kb on - strand, within CCNA_00869at 949.621 kb on + strand, within CCNA_00869at 949.643 kb on - strand, within CCNA_00869at 949.659 kb on + strand, within CCNA_00869at 949.733 kb on + strand, within CCNA_00869at 949.866 kb on - strand, within CCNA_00869at 949.894 kb on - strand, within CCNA_00869at 949.917 kb on - strand, within CCNA_00869at 949.930 kb on - strand, within CCNA_00869at 949.931 kb on - strand, within CCNA_00869at 949.948 kb on + strand, within CCNA_00869at 949.957 kb on - strand, within CCNA_00869at 949.995 kb on - strand, within CCNA_00869at 950.028 kb on - strand, within CCNA_00869at 950.033 kb on + strand, within CCNA_00869at 950.062 kb on - strand, within CCNA_00869at 950.074 kb on + strand, within CCNA_00869at 950.104 kb on + strandat 950.114 kb on - strandat 950.114 kb on - strandat 950.123 kb on + strandat 950.131 kb on - strandat 950.131 kb on - strandat 950.154 kb on + strandat 950.154 kb on + strandat 950.196 kb on + strandat 950.224 kb on - strandat 950.224 kb on - strandat 950.225 kb on - strandat 950.241 kb on - strandat 950.310 kb on - strandat 950.378 kb on + strandat 950.378 kb on + strandat 950.379 kb on + strandat 950.381 kb on + strandat 950.386 kb on - strandat 950.406 kb on - strandat 950.408 kb on + strandat 950.416 kb on - strandat 950.450 kb on - strandat 950.452 kb on + strandat 950.455 kb on - strandat 950.480 kb on + strandat 950.484 kb on + strandat 950.495 kb on + strand, within CCNA_00870at 950.495 kb on + strand, within CCNA_00870at 950.501 kb on + strand, within CCNA_00870at 950.518 kb on + strand, within CCNA_00870at 950.519 kb on + strand, within CCNA_00870at 950.519 kb on + strand, within CCNA_00870at 950.527 kb on - strand, within CCNA_00870at 950.527 kb on - strand, within CCNA_00870at 950.527 kb on - strand, within CCNA_00870at 950.593 kb on - strand, within CCNA_00870at 950.670 kb on - strand, within CCNA_00870at 950.734 kb on + strand, within CCNA_00870at 950.741 kb on + strand, within CCNA_00870at 950.741 kb on + strand, within CCNA_00870at 950.751 kb on + strand, within CCNA_00870at 950.751 kb on + strand, within CCNA_00870at 950.751 kb on + strand, within CCNA_00870at 950.759 kb on - strand, within CCNA_00870at 950.777 kb on - strand, within CCNA_00870at 950.829 kb on + strand, within CCNA_00870at 950.837 kb on - strand, within CCNA_00870at 950.859 kb on + strandat 950.884 kb on - strandat 950.887 kb on + strandat 950.895 kb on - strandat 950.895 kb on - strandat 950.895 kb on - strandat 950.903 kb on - strandat 950.905 kb on + strandat 950.923 kb on - strandat 950.936 kb on - strandat 950.941 kb on - strandat 950.967 kb on - strandat 951.014 kb on + strand, within CCNA_00871at 951.038 kb on + strand, within CCNA_00871at 951.047 kb on + strand, within CCNA_00871at 951.062 kb on + strandat 951.062 kb on + strand, within CCNA_00871at 951.102 kb on + strand, within CCNA_00871at 951.112 kb on + strand, within CCNA_00871at 951.120 kb on - strand, within CCNA_00871at 951.120 kb on - strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.182 kb on + strand, within CCNA_00871at 951.190 kb on - strand, within CCNA_00871at 951.218 kb on + strand, within CCNA_00871at 951.218 kb on + strand, within CCNA_00871at 951.224 kb on + strand, within CCNA_00871at 951.226 kb on - strand, within CCNA_00871at 951.226 kb on - strand, within CCNA_00871at 951.259 kb on - strand, within CCNA_00871at 951.269 kb on + strand, within CCNA_00871at 951.280 kb on + strand, within CCNA_00871at 951.288 kb on - strand, within CCNA_00871at 951.294 kb on + strand, within CCNA_00871at 951.330 kb on + strand, within CCNA_00871at 951.374 kb on + strand, within CCNA_00871at 951.379 kb on + strand, within CCNA_00871at 951.379 kb on + strand, within CCNA_00871at 951.387 kb on - strand, within CCNA_00871at 951.393 kb on - strand, within CCNA_00871at 951.395 kb on - strand, within CCNA_00871at 951.411 kb on - strand, within CCNA_00871at 951.444 kb on + strand, within CCNA_00871at 951.482 kb on + strand, within CCNA_00871at 951.510 kb on + strand, within CCNA_00871at 951.510 kb on + strand, within CCNA_00871at 951.550 kb on - strand, within CCNA_00871at 951.552 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.575 kb on - strand, within CCNA_00871at 951.637 kb on + strand, within CCNA_00871at 951.665 kb on - strand, within CCNA_00871at 951.683 kb on + strandat 951.683 kb on + strandat 951.683 kb on + strandat 951.691 kb on - strandat 951.695 kb on + strandat 951.703 kb on - strandat 951.716 kb on + strandat 951.717 kb on + strandat 951.727 kb on + strandat 951.735 kb on - strandat 951.740 kb on - strandat 951.742 kb on + strandat 951.742 kb on + strandat 951.742 kb on + strandat 951.750 kb on - strandat 951.750 kb on - strandat 951.775 kb on - strandat 951.780 kb on - strand, within CCNA_00872at 951.781 kb on + strand, within CCNA_00872at 951.805 kb on - strand, within CCNA_00872at 951.864 kb on - strand, within CCNA_00872

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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949,469 - CCNA_00869 0.69 +2.4
949,469 - CCNA_00869 0.69 +2.0
949,497 + CCNA_00869 0.70 -1.0
949,546 - CCNA_00869 0.72 +1.1
949,548 + +3.3
949,548 + CCNA_00869 0.72 +1.1
949,548 + CCNA_00869 0.72 -0.2
949,582 + CCNA_00869 0.73 -1.8
949,590 - CCNA_00869 0.73 +0.9
949,621 + CCNA_00869 0.74 +2.0
949,643 - CCNA_00869 0.75 +1.0
949,659 + CCNA_00869 0.75 +0.4
949,733 + CCNA_00869 0.78 +0.3
949,866 - CCNA_00869 0.82 +1.3
949,894 - CCNA_00869 0.83 +0.8
949,917 - CCNA_00869 0.84 +0.4
949,930 - CCNA_00869 0.85 +2.3
949,931 - CCNA_00869 0.85 +1.3
949,948 + CCNA_00869 0.85 +0.0
949,957 - CCNA_00869 0.86 +2.0
949,995 - CCNA_00869 0.87 +3.9
950,028 - CCNA_00869 0.88 -0.0
950,033 + CCNA_00869 0.88 +0.2
950,062 - CCNA_00869 0.89 -0.5
950,074 + CCNA_00869 0.90 +1.0
950,104 + -1.1
950,114 - -1.0
950,114 - +1.7
950,123 + +2.7
950,131 - +1.4
950,131 - -0.4
950,154 + +0.7
950,154 + -0.0
950,196 + -0.2
950,224 - +0.4
950,224 - +1.2
950,225 - +0.5
950,241 - +1.1
950,310 - -0.1
950,378 + +0.0
950,378 + +0.8
950,379 + +0.5
950,381 + -0.5
950,386 - +2.7
950,406 - +1.2
950,408 + -1.1
950,416 - -0.1
950,450 - -0.8
950,452 + -0.4
950,455 - +1.4
950,480 + -0.0
950,484 + -1.4
950,495 + CCNA_00870 0.11 +0.5
950,495 + CCNA_00870 0.11 -0.5
950,501 + CCNA_00870 0.12 +1.2
950,518 + CCNA_00870 0.16 -0.8
950,519 + CCNA_00870 0.16 +0.5
950,519 + CCNA_00870 0.16 -0.5
950,527 - CCNA_00870 0.18 +0.1
950,527 - CCNA_00870 0.18 +0.5
950,527 - CCNA_00870 0.18 +0.9
950,593 - CCNA_00870 0.33 +0.5
950,670 - CCNA_00870 0.50 +2.2
950,734 + CCNA_00870 0.65 -0.4
950,741 + CCNA_00870 0.67 -0.5
950,741 + CCNA_00870 0.67 +3.0
950,751 + CCNA_00870 0.69 -0.6
950,751 + CCNA_00870 0.69 +1.3
950,751 + CCNA_00870 0.69 -0.2
950,759 - CCNA_00870 0.71 +2.1
950,777 - CCNA_00870 0.75 +2.9
950,829 + CCNA_00870 0.87 -1.7
950,837 - CCNA_00870 0.89 +2.1
950,859 + -0.6
950,884 - +1.0
950,887 + +0.1
950,895 - +1.8
950,895 - +1.2
950,895 - +2.6
950,903 - +1.1
950,905 + +0.3
950,923 - +1.6
950,936 - +1.4
950,941 - -0.2
950,967 - +1.0
951,014 + CCNA_00871 0.13 +0.7
951,038 + CCNA_00871 0.15 -0.0
951,047 + CCNA_00871 0.17 -1.6
951,062 + +4.3
951,062 + CCNA_00871 0.18 -1.2
951,102 + CCNA_00871 0.23 +0.7
951,112 + CCNA_00871 0.24 -0.0
951,120 - CCNA_00871 0.25 +0.5
951,120 - CCNA_00871 0.25 +2.0
951,182 + CCNA_00871 0.32 -0.6
951,182 + CCNA_00871 0.32 -0.5
951,182 + CCNA_00871 0.32 +0.0
951,190 - CCNA_00871 0.33 +1.5
951,218 + CCNA_00871 0.37 -0.9
951,218 + CCNA_00871 0.37 +2.0
951,224 + CCNA_00871 0.37 -0.2
951,226 - CCNA_00871 0.38 +1.1
951,226 - CCNA_00871 0.38 +1.6
951,259 - CCNA_00871 0.41 -0.0
951,269 + CCNA_00871 0.43 -0.1
951,280 + CCNA_00871 0.44 +0.1
951,288 - CCNA_00871 0.45 -0.1
951,294 + CCNA_00871 0.46 +0.1
951,330 + CCNA_00871 0.50 +0.7
951,374 + CCNA_00871 0.55 +0.5
951,379 + CCNA_00871 0.56 +0.8
951,379 + CCNA_00871 0.56 +0.0
951,387 - CCNA_00871 0.56 +0.9
951,393 - CCNA_00871 0.57 +2.7
951,395 - CCNA_00871 0.57 -0.9
951,411 - CCNA_00871 0.59 +1.4
951,444 + CCNA_00871 0.63 -2.1
951,482 + CCNA_00871 0.68 -1.6
951,510 + CCNA_00871 0.71 -0.1
951,510 + CCNA_00871 0.71 -0.2
951,550 - CCNA_00871 0.76 -0.3
951,552 - CCNA_00871 0.76 -0.6
951,575 - CCNA_00871 0.79 +0.4
951,575 - CCNA_00871 0.79 +2.8
951,575 - CCNA_00871 0.79 -0.1
951,637 + CCNA_00871 0.86 +0.4
951,665 - CCNA_00871 0.89 +1.7
951,683 + -0.6
951,683 + -0.6
951,683 + +1.8
951,691 - +0.5
951,695 + -0.4
951,703 - +0.5
951,716 + +2.0
951,717 + -0.1
951,727 + +1.7
951,735 - -0.5
951,740 - +0.3
951,742 + +1.3
951,742 + -0.5
951,742 + +1.3
951,750 - +0.2
951,750 - +1.1
951,775 - +1.1
951,780 - CCNA_00872 0.10 +2.3
951,781 + CCNA_00872 0.11 +0.5
951,805 - CCNA_00872 0.20 +1.6
951,864 - CCNA_00872 0.43 +1.8

Or see this region's nucleotide sequence