Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides CCNA_03889 and CCNA_00869 are separated by 157 nucleotides
CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) <small>(from data)</small>, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
Position (kb) 946
947 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 945.086 kb on - strand, within CCNA_00866 at 945.089 kb on - strand, within CCNA_00866 at 945.101 kb on + strand, within CCNA_00866 at 945.109 kb on - strand, within CCNA_00866 at 945.136 kb on + strand, within CCNA_00866 at 945.144 kb on - strand, within CCNA_00866 at 945.149 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.172 kb on + strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.191 kb on + strand, within CCNA_00866 at 945.237 kb on + strand, within CCNA_00866 at 945.269 kb on - strand, within CCNA_00866 at 945.271 kb on + strand, within CCNA_00866 at 945.273 kb on + strand, within CCNA_00866 at 945.318 kb on + strand, within CCNA_00866 at 945.324 kb on - strand, within CCNA_00866 at 945.404 kb on - strand, within CCNA_00866 at 945.481 kb on - strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.495 kb on - strand, within CCNA_00866 at 945.517 kb on - strand, within CCNA_00866 at 945.543 kb on + strand, within CCNA_00866 at 945.548 kb on + strand, within CCNA_00866 at 945.555 kb on + strand, within CCNA_00866 at 945.565 kb on + strand, within CCNA_00866 at 945.573 kb on + strand, within CCNA_00866 at 945.578 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.584 kb on + strand, within CCNA_00866 at 945.585 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand at 945.663 kb on - strand, within CCNA_00866 at 945.668 kb on + strand, within CCNA_00866 at 945.681 kb on - strand, within CCNA_00866 at 945.682 kb on + strand, within CCNA_00866 at 945.705 kb on + strand at 945.745 kb on - strand at 945.762 kb on + strand at 945.770 kb on - strand at 945.781 kb on - strand at 945.781 kb on - strand at 945.868 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.924 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 946.011 kb on + strand at 946.065 kb on + strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.132 kb on + strand, within CCNA_00867 at 946.135 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.146 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.161 kb on + strand, within CCNA_00867 at 946.168 kb on - strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.246 kb on - strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.332 kb on - strand, within CCNA_00867 at 946.334 kb on + strand, within CCNA_00867 at 946.340 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.389 kb on - strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.457 kb on + strand at 946.464 kb on + strand at 946.494 kb on - strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.517 kb on - strand at 946.553 kb on - strand at 946.589 kb on + strand at 946.609 kb on - strand at 946.655 kb on + strand at 946.656 kb on + strand at 946.656 kb on + strand at 946.658 kb on - strand at 946.664 kb on - strand at 946.685 kb on + strand at 946.711 kb on - strand at 946.727 kb on - strand at 946.741 kb on + strand at 946.767 kb on - strand at 946.809 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.823 kb on - strand, within CCNA_03889 at 946.827 kb on + strand, within CCNA_03889 at 946.827 kb on + strand, within CCNA_03889 at 946.876 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.944 kb on + strand, within CCNA_03889 at 946.962 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.970 kb on - strand, within CCNA_03889 at 946.978 kb on + strand, within CCNA_03889 at 946.981 kb on + strand, within CCNA_03889 at 946.986 kb on - strand, within CCNA_03889 at 946.996 kb on + strand, within CCNA_03889 at 946.998 kb on - strand, within CCNA_03889 at 947.004 kb on - strand, within CCNA_03889 at 947.010 kb on + strand, within CCNA_03889 at 947.031 kb on + strand, within CCNA_03889 at 947.062 kb on - strand, within CCNA_03889 at 947.088 kb on + strand, within CCNA_03889 at 947.107 kb on + strand, within CCNA_03889 at 947.109 kb on - strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.203 kb on + strand, within CCNA_03889 at 947.211 kb on - strand, within CCNA_03889 at 947.231 kb on + strand at 947.237 kb on + strand at 947.247 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.269 kb on + strand at 947.269 kb on + strand at 947.271 kb on + strand at 947.274 kb on + strand at 947.282 kb on - strand at 947.306 kb on + strand at 947.356 kb on + strand at 947.358 kb on - strand at 947.364 kb on - strand at 947.391 kb on + strand at 947.418 kb on + strand at 947.418 kb on + strand at 947.442 kb on + strand at 947.452 kb on + strand at 947.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 945,086 - CCNA_00866 0.37 +0.6 945,089 - CCNA_00866 0.37 +1.3 945,101 + CCNA_00866 0.38 -0.0 945,109 - CCNA_00866 0.39 +0.1 945,136 + CCNA_00866 0.41 +0.8 945,144 - CCNA_00866 0.42 +1.0 945,149 + CCNA_00866 0.42 +2.0 945,167 + CCNA_00866 0.44 +0.8 945,167 + CCNA_00866 0.44 -0.2 945,167 + CCNA_00866 0.44 -0.8 945,172 + CCNA_00866 0.44 -0.1 945,175 - CCNA_00866 0.44 -0.3 945,175 - CCNA_00866 0.44 -2.1 945,175 - CCNA_00866 0.44 -0.9 945,175 - CCNA_00866 0.44 +1.7 945,191 + CCNA_00866 0.46 +1.3 945,237 + CCNA_00866 0.50 -0.7 945,269 - CCNA_00866 0.52 +0.9 945,271 + CCNA_00866 0.53 -0.1 945,273 + CCNA_00866 0.53 +0.8 945,318 + CCNA_00866 0.57 -0.3 945,324 - CCNA_00866 0.57 -0.3 945,404 - CCNA_00866 0.64 -1.5 945,481 - CCNA_00866 0.71 +1.6 945,494 + CCNA_00866 0.72 -0.2 945,494 + CCNA_00866 0.72 -0.9 945,494 + CCNA_00866 0.72 -0.8 945,495 - CCNA_00866 0.72 -0.3 945,517 - CCNA_00866 0.74 -0.2 945,543 + CCNA_00866 0.76 +1.5 945,548 + CCNA_00866 0.77 -1.0 945,555 + CCNA_00866 0.77 +2.7 945,565 + CCNA_00866 0.78 +4.1 945,573 + CCNA_00866 0.79 -0.4 945,578 - CCNA_00866 0.79 -1.4 945,583 - CCNA_00866 0.80 +0.5 945,583 - CCNA_00866 0.80 -1.3 945,584 + CCNA_00866 0.80 +0.0 945,585 + CCNA_00866 0.80 +1.9 945,621 + CCNA_00866 0.83 +0.5 945,621 + CCNA_00866 0.83 -1.3 945,621 + CCNA_00866 0.83 +0.4 945,621 + CCNA_00866 0.83 -0.6 945,621 + CCNA_00866 0.83 -1.0 945,629 - CCNA_00866 0.84 -1.7 945,629 - CCNA_00866 0.84 -0.2 945,629 - CCNA_00866 0.84 -0.7 945,629 - CCNA_00866 0.84 -1.8 945,629 - +1.3 945,663 - CCNA_00866 0.87 +0.2 945,668 + CCNA_00866 0.87 +0.7 945,681 - CCNA_00866 0.88 -0.8 945,682 + CCNA_00866 0.88 +1.5 945,705 + +0.3 945,745 - -0.4 945,762 + -0.2 945,770 - -2.3 945,781 - -1.5 945,781 - +1.1 945,868 - +0.4 945,921 + -2.0 945,921 + +0.4 945,921 + +1.5 945,921 + +0.6 945,921 + -0.9 945,921 + -0.8 945,921 + -1.2 945,921 + +0.2 945,921 + -0.9 945,921 + +2.1 945,921 + +4.0 945,921 + -0.0 945,924 - +0.9 945,929 - +0.9 945,929 - -2.2 945,929 - -1.8 945,929 - +1.0 945,929 - -1.5 945,929 - -0.3 945,929 - -0.8 945,929 - +1.0 946,011 + +3.0 946,065 + CCNA_00867 0.12 -1.0 946,065 - CCNA_00867 0.12 -0.9 946,065 - CCNA_00867 0.12 +0.4 946,132 + CCNA_00867 0.26 +0.4 946,135 - CCNA_00867 0.27 +0.1 946,143 + CCNA_00867 0.28 +0.2 946,143 + CCNA_00867 0.28 +0.8 946,146 + CCNA_00867 0.29 -1.4 946,151 - CCNA_00867 0.30 -0.6 946,151 - CCNA_00867 0.30 +0.4 946,151 - CCNA_00867 0.30 -0.7 946,151 - CCNA_00867 0.30 +0.6 946,161 + CCNA_00867 0.32 -0.6 946,168 - CCNA_00867 0.34 -0.5 946,190 + CCNA_00867 0.38 -0.5 946,190 + CCNA_00867 0.38 -0.9 946,198 - CCNA_00867 0.40 -0.1 946,198 - CCNA_00867 0.40 +1.3 946,237 + CCNA_00867 0.48 +1.1 946,237 + CCNA_00867 0.48 +0.9 946,245 - CCNA_00867 0.49 -0.8 946,245 - CCNA_00867 0.49 +0.5 946,245 - CCNA_00867 0.49 -0.4 946,245 - CCNA_00867 0.49 +1.3 946,245 - CCNA_00867 0.49 +0.4 946,246 - CCNA_00867 0.49 -0.8 946,304 + CCNA_00867 0.61 +1.3 946,304 + CCNA_00867 0.61 +0.6 946,304 + CCNA_00867 0.61 +1.7 946,312 - CCNA_00867 0.63 -0.6 946,312 - CCNA_00867 0.63 +0.6 946,312 - CCNA_00867 0.63 +0.2 946,312 - CCNA_00867 0.63 +0.2 946,312 - CCNA_00867 0.63 +0.6 946,324 + CCNA_00867 0.65 +0.6 946,324 + CCNA_00867 0.65 +1.5 946,324 + CCNA_00867 0.65 +0.1 946,324 + CCNA_00867 0.65 +0.5 946,332 - CCNA_00867 0.67 -0.8 946,334 + CCNA_00867 0.67 +2.2 946,340 + CCNA_00867 0.69 +1.3 946,376 + CCNA_00867 0.76 -1.0 946,381 + CCNA_00867 0.77 +0.1 946,389 - CCNA_00867 0.79 -0.5 946,405 + CCNA_00867 0.82 +0.7 946,405 + CCNA_00867 0.82 +0.2 946,413 - CCNA_00867 0.84 -0.6 946,457 + +0.0 946,464 + -0.8 946,494 - -0.1 946,509 + -0.3 946,509 + +0.9 946,509 + +1.1 946,509 + +1.4 946,509 + +1.5 946,509 + +0.3 946,509 + +0.7 946,509 + +2.3 946,517 - +2.0 946,553 - -1.1 946,589 + -0.3 946,609 - -1.8 946,655 + -0.0 946,656 + +0.5 946,656 + +0.5 946,658 - +0.7 946,664 - -0.8 946,685 + +2.9 946,711 - +0.5 946,727 - +0.6 946,741 + -1.6 946,767 - -0.6 946,809 + CCNA_03889 0.12 -2.6 946,815 + CCNA_03889 0.13 +1.5 946,815 + CCNA_03889 0.13 -0.9 946,815 + CCNA_03889 0.13 -0.2 946,815 + CCNA_03889 0.13 +0.5 946,815 + CCNA_03889 0.13 +0.4 946,823 - CCNA_03889 0.15 -0.1 946,827 + CCNA_03889 0.15 -1.6 946,827 + CCNA_03889 0.15 -1.1 946,876 + CCNA_03889 0.25 +0.5 946,917 + CCNA_03889 0.33 +1.8 946,917 + CCNA_03889 0.33 -0.8 946,917 + CCNA_03889 0.33 -0.1 946,925 - CCNA_03889 0.34 +0.5 946,925 - CCNA_03889 0.34 -0.6 946,925 - CCNA_03889 0.34 +0.8 946,944 + CCNA_03889 0.38 -0.9 946,962 + CCNA_03889 0.41 +0.7 946,963 + CCNA_03889 0.41 +0.1 946,963 + CCNA_03889 0.41 +1.0 946,963 + CCNA_03889 0.41 +2.1 946,970 - CCNA_03889 0.43 +0.2 946,978 + CCNA_03889 0.44 +0.6 946,981 + CCNA_03889 0.45 +0.1 946,986 - CCNA_03889 0.46 +2.3 946,996 + CCNA_03889 0.48 -0.5 946,998 - CCNA_03889 0.48 +1.7 947,004 - CCNA_03889 0.49 -0.5 947,010 + CCNA_03889 0.50 +0.1 947,031 + CCNA_03889 0.54 -0.0 947,062 - CCNA_03889 0.60 -1.3 947,088 + CCNA_03889 0.65 -1.3 947,107 + CCNA_03889 0.69 +0.1 947,109 - CCNA_03889 0.69 +0.4 947,115 - CCNA_03889 0.70 +0.1 947,203 + CCNA_03889 0.87 +1.3 947,211 - CCNA_03889 0.89 +1.0 947,231 + -0.0 947,237 + +0.3 947,247 + +0.2 947,262 + +0.3 947,262 + -1.0 947,262 + +0.8 947,262 + -0.8 947,262 + +0.8 947,262 + -1.5 947,269 + +0.1 947,269 + +1.0 947,271 + -0.1 947,274 + -0.1 947,282 - +2.3 947,306 + -0.4 947,356 + +1.4 947,358 - +1.7 947,364 - +1.0 947,391 + +0.3 947,418 + -0.8 947,418 + +1.6 947,442 + -0.6 947,452 + +0.0 947,485 - +0.9
Or see this region's nucleotide sequence