Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00855

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00854 and CCNA_00855 overlap by 4 nucleotidesCCNA_00855 and CCNA_00856 are separated by 140 nucleotides CCNA_00854: CCNA_00854 - metallo-beta-lactamase protein, at 929,146 to 930,738 _00854 CCNA_00855: CCNA_00855 - rhamnogalacturonan acetylesterase, at 930,735 to 931,592 _00855 CCNA_00856: CCNA_00856 - beta-xylosidase, at 931,733 to 933,355 _00856 Position (kb) 930 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 929.744 kb on + strand, within CCNA_00854at 929.752 kb on - strand, within CCNA_00854at 929.844 kb on + strand, within CCNA_00854at 929.861 kb on - strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.945 kb on + strand, within CCNA_00854at 929.945 kb on - strand, within CCNA_00854at 930.017 kb on - strand, within CCNA_00854at 930.049 kb on - strand, within CCNA_00854at 930.068 kb on - strand, within CCNA_00854at 930.076 kb on - strand, within CCNA_00854at 930.093 kb on + strand, within CCNA_00854at 930.122 kb on + strand, within CCNA_00854at 930.132 kb on + strand, within CCNA_00854at 930.140 kb on - strand, within CCNA_00854at 930.140 kb on - strand, within CCNA_00854at 930.179 kb on + strand, within CCNA_00854at 930.189 kb on + strand, within CCNA_00854at 930.206 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.240 kb on - strand, within CCNA_00854at 930.245 kb on - strand, within CCNA_00854at 930.265 kb on - strand, within CCNA_00854at 930.270 kb on - strand, within CCNA_00854at 930.286 kb on - strand, within CCNA_00854at 930.293 kb on + strand, within CCNA_00854at 930.316 kb on - strand, within CCNA_00854at 930.317 kb on + strand, within CCNA_00854at 930.321 kb on - strand, within CCNA_00854at 930.392 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.522 kb on + strand, within CCNA_00854at 930.615 kb on - strandat 930.625 kb on - strandat 930.645 kb on + strandat 930.652 kb on + strandat 930.659 kb on - strandat 930.671 kb on + strandat 930.673 kb on + strandat 930.681 kb on - strandat 930.699 kb on + strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.727 kb on - strandat 930.741 kb on - strandat 930.741 kb on - strandat 930.782 kb on - strandat 930.796 kb on + strandat 930.801 kb on + strandat 930.804 kb on - strandat 930.820 kb on + strandat 930.835 kb on - strand, within CCNA_00855at 930.845 kb on - strand, within CCNA_00855at 930.845 kb on - strand, within CCNA_00855at 930.848 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.908 kb on - strand, within CCNA_00855at 930.918 kb on + strand, within CCNA_00855at 930.918 kb on + strand, within CCNA_00855at 930.923 kb on + strand, within CCNA_00855at 931.027 kb on + strand, within CCNA_00855at 931.032 kb on + strand, within CCNA_00855at 931.040 kb on - strand, within CCNA_00855at 931.045 kb on + strand, within CCNA_00855at 931.050 kb on + strand, within CCNA_00855at 931.070 kb on + strand, within CCNA_00855at 931.078 kb on + strand, within CCNA_00855at 931.078 kb on + strand, within CCNA_00855at 931.086 kb on - strand, within CCNA_00855at 931.110 kb on - strand, within CCNA_00855at 931.129 kb on - strand, within CCNA_00855at 931.139 kb on - strand, within CCNA_00855at 931.139 kb on - strand, within CCNA_00855at 931.140 kb on - strand, within CCNA_00855at 931.147 kb on + strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.174 kb on + strand, within CCNA_00855at 931.194 kb on - strand, within CCNA_00855at 931.194 kb on - strand, within CCNA_00855at 931.206 kb on + strand, within CCNA_00855at 931.219 kb on - strand, within CCNA_00855at 931.221 kb on + strand, within CCNA_00855at 931.237 kb on - strand, within CCNA_00855at 931.297 kb on + strand, within CCNA_00855at 931.305 kb on - strand, within CCNA_00855at 931.319 kb on + strand, within CCNA_00855at 931.322 kb on - strand, within CCNA_00855at 931.333 kb on + strand, within CCNA_00855at 931.341 kb on - strand, within CCNA_00855at 931.358 kb on + strand, within CCNA_00855at 931.433 kb on - strand, within CCNA_00855at 931.444 kb on + strand, within CCNA_00855at 931.444 kb on + strand, within CCNA_00855at 931.452 kb on - strand, within CCNA_00855at 931.470 kb on + strand, within CCNA_00855at 931.470 kb on + strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.512 kb on - strandat 931.534 kb on - strandat 931.540 kb on + strandat 931.570 kb on - strandat 931.592 kb on + strandat 931.600 kb on - strandat 931.608 kb on + strandat 931.613 kb on - strandat 931.639 kb on + strandat 931.639 kb on + strandat 931.652 kb on - strandat 931.652 kb on - strandat 931.681 kb on - strandat 931.693 kb on - strandat 931.750 kb on + strandat 931.757 kb on - strandat 931.776 kb on + strandat 931.778 kb on + strandat 931.850 kb on - strandat 931.877 kb on + strandat 931.878 kb on + strandat 931.945 kb on - strand, within CCNA_00856at 931.978 kb on + strand, within CCNA_00856at 931.994 kb on - strand, within CCNA_00856at 932.014 kb on + strand, within CCNA_00856at 932.051 kb on + strand, within CCNA_00856at 932.056 kb on + strand, within CCNA_00856at 932.059 kb on - strand, within CCNA_00856at 932.062 kb on + strand, within CCNA_00856at 932.065 kb on - strand, within CCNA_00856at 932.067 kb on + strand, within CCNA_00856at 932.106 kb on + strand, within CCNA_00856at 932.135 kb on - strand, within CCNA_00856at 932.140 kb on - strand, within CCNA_00856at 932.140 kb on - strand, within CCNA_00856at 932.140 kb on - strand, within CCNA_00856at 932.150 kb on - strand, within CCNA_00856at 932.158 kb on - strand, within CCNA_00856at 932.177 kb on + strand, within CCNA_00856at 932.210 kb on - strand, within CCNA_00856at 932.245 kb on - strand, within CCNA_00856at 932.281 kb on + strand, within CCNA_00856at 932.296 kb on + strand, within CCNA_00856at 932.301 kb on + strand, within CCNA_00856at 932.310 kb on + strand, within CCNA_00856at 932.310 kb on + strand, within CCNA_00856at 932.310 kb on + strand, within CCNA_00856at 932.310 kb on + strand, within CCNA_00856at 932.318 kb on - strand, within CCNA_00856at 932.318 kb on - strand, within CCNA_00856at 932.373 kb on + strand, within CCNA_00856at 932.381 kb on - strand, within CCNA_00856at 932.443 kb on - strand, within CCNA_00856at 932.445 kb on + strand, within CCNA_00856at 932.453 kb on - strand, within CCNA_00856at 932.453 kb on - strand, within CCNA_00856at 932.505 kb on + strand, within CCNA_00856at 932.523 kb on + strand, within CCNA_00856at 932.530 kb on + strand, within CCNA_00856

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
929,744 + CCNA_00854 0.38 +0.5
929,752 - CCNA_00854 0.38 +0.3
929,844 + CCNA_00854 0.44 -1.6
929,861 - CCNA_00854 0.45 -0.5
929,915 + CCNA_00854 0.48 -1.3
929,915 + CCNA_00854 0.48 +1.6
929,945 + CCNA_00854 0.50 +1.9
929,945 - CCNA_00854 0.50 -0.0
930,017 - CCNA_00854 0.55 +0.9
930,049 - CCNA_00854 0.57 -1.7
930,068 - CCNA_00854 0.58 +0.2
930,076 - CCNA_00854 0.58 +0.8
930,093 + CCNA_00854 0.59 -0.9
930,122 + CCNA_00854 0.61 +0.8
930,132 + CCNA_00854 0.62 -0.9
930,140 - CCNA_00854 0.62 +0.7
930,140 - CCNA_00854 0.62 -0.4
930,179 + CCNA_00854 0.65 +0.1
930,189 + CCNA_00854 0.65 -1.3
930,206 + CCNA_00854 0.67 +1.7
930,232 + CCNA_00854 0.68 +1.6
930,232 + CCNA_00854 0.68 -0.7
930,232 + CCNA_00854 0.68 -0.6
930,240 - CCNA_00854 0.69 +0.5
930,245 - CCNA_00854 0.69 +0.7
930,265 - CCNA_00854 0.70 -0.7
930,270 - CCNA_00854 0.71 +0.1
930,286 - CCNA_00854 0.72 +1.9
930,293 + CCNA_00854 0.72 -0.1
930,316 - CCNA_00854 0.73 -0.1
930,317 + CCNA_00854 0.74 +0.9
930,321 - CCNA_00854 0.74 +0.3
930,392 + CCNA_00854 0.78 -0.1
930,489 + CCNA_00854 0.84 +0.8
930,489 + CCNA_00854 0.84 -0.2
930,489 + CCNA_00854 0.84 +0.8
930,522 + CCNA_00854 0.86 -2.2
930,615 - -1.4
930,625 - +0.2
930,645 + +0.3
930,652 + -0.9
930,659 - -0.3
930,671 + +0.0
930,673 + +1.2
930,681 - +3.3
930,699 + -1.3
930,702 - -1.1
930,702 - +0.4
930,727 - +0.3
930,741 - -0.3
930,741 - -1.7
930,782 - +0.3
930,796 + -0.7
930,801 + +1.1
930,804 - -0.8
930,820 + -1.3
930,835 - CCNA_00855 0.12 +0.1
930,845 - CCNA_00855 0.13 -0.2
930,845 - CCNA_00855 0.13 +2.0
930,848 + CCNA_00855 0.13 +0.1
930,900 + CCNA_00855 0.19 +0.2
930,900 + CCNA_00855 0.19 +1.0
930,900 + CCNA_00855 0.19 +1.1
930,900 + CCNA_00855 0.19 -0.0
930,908 - CCNA_00855 0.20 -0.9
930,918 + CCNA_00855 0.21 +0.7
930,918 + CCNA_00855 0.21 -0.3
930,923 + CCNA_00855 0.22 -1.0
931,027 + CCNA_00855 0.34 +0.7
931,032 + CCNA_00855 0.35 -0.9
931,040 - CCNA_00855 0.36 -1.2
931,045 + CCNA_00855 0.36 -2.0
931,050 + CCNA_00855 0.37 -0.5
931,070 + CCNA_00855 0.39 -0.9
931,078 + CCNA_00855 0.40 -2.2
931,078 + CCNA_00855 0.40 +1.3
931,086 - CCNA_00855 0.41 -1.1
931,110 - CCNA_00855 0.44 -0.8
931,129 - CCNA_00855 0.46 +0.6
931,139 - CCNA_00855 0.47 -0.3
931,139 - CCNA_00855 0.47 -0.4
931,140 - CCNA_00855 0.47 -2.1
931,147 + CCNA_00855 0.48 -0.6
931,155 - CCNA_00855 0.49 -0.0
931,155 - CCNA_00855 0.49 +0.2
931,155 - CCNA_00855 0.49 -0.6
931,174 + CCNA_00855 0.51 -0.2
931,194 - CCNA_00855 0.53 -0.3
931,194 - CCNA_00855 0.53 +0.4
931,206 + CCNA_00855 0.55 +0.5
931,219 - CCNA_00855 0.56 -1.7
931,221 + CCNA_00855 0.57 -0.2
931,237 - CCNA_00855 0.59 -2.8
931,297 + CCNA_00855 0.66 +3.0
931,305 - CCNA_00855 0.66 +0.7
931,319 + CCNA_00855 0.68 +1.1
931,322 - CCNA_00855 0.68 +4.3
931,333 + CCNA_00855 0.70 +0.2
931,341 - CCNA_00855 0.71 -1.8
931,358 + CCNA_00855 0.73 +1.7
931,433 - CCNA_00855 0.81 +1.1
931,444 + CCNA_00855 0.83 -0.8
931,444 + CCNA_00855 0.83 +0.7
931,452 - CCNA_00855 0.84 +0.7
931,470 + CCNA_00855 0.86 +1.3
931,470 + CCNA_00855 0.86 +1.2
931,478 - CCNA_00855 0.87 -1.5
931,478 - CCNA_00855 0.87 -1.7
931,478 - CCNA_00855 0.87 -1.5
931,512 - -0.1
931,534 - +1.1
931,540 + +1.5
931,570 - -0.6
931,592 + -0.1
931,600 - -1.0
931,608 + -1.1
931,613 - +1.3
931,639 + -2.0
931,639 + -0.8
931,652 - -1.4
931,652 - -0.5
931,681 - -1.1
931,693 - -1.6
931,750 + +0.5
931,757 - +1.2
931,776 + -0.5
931,778 + +2.3
931,850 - -1.6
931,877 + -0.5
931,878 + +1.7
931,945 - CCNA_00856 0.13 -1.8
931,978 + CCNA_00856 0.15 +0.5
931,994 - CCNA_00856 0.16 +1.1
932,014 + CCNA_00856 0.17 +0.7
932,051 + CCNA_00856 0.20 +0.3
932,056 + CCNA_00856 0.20 +0.5
932,059 - CCNA_00856 0.20 +0.5
932,062 + CCNA_00856 0.20 +1.7
932,065 - CCNA_00856 0.20 +0.8
932,067 + CCNA_00856 0.21 +0.8
932,106 + CCNA_00856 0.23 -0.0
932,135 - CCNA_00856 0.25 -1.7
932,140 - CCNA_00856 0.25 -0.8
932,140 - CCNA_00856 0.25 +0.3
932,140 - CCNA_00856 0.25 -0.2
932,150 - CCNA_00856 0.26 +1.0
932,158 - CCNA_00856 0.26 -0.2
932,177 + CCNA_00856 0.27 -0.3
932,210 - CCNA_00856 0.29 -1.7
932,245 - CCNA_00856 0.32 +0.1
932,281 + CCNA_00856 0.34 +1.4
932,296 + CCNA_00856 0.35 +0.2
932,301 + CCNA_00856 0.35 +2.3
932,310 + CCNA_00856 0.36 +2.0
932,310 + CCNA_00856 0.36 +2.3
932,310 + CCNA_00856 0.36 +2.2
932,310 + CCNA_00856 0.36 +2.4
932,318 - CCNA_00856 0.36 +0.1
932,318 - CCNA_00856 0.36 +0.1
932,373 + CCNA_00856 0.39 +0.2
932,381 - CCNA_00856 0.40 +1.9
932,443 - CCNA_00856 0.44 -0.3
932,445 + CCNA_00856 0.44 -1.0
932,453 - CCNA_00856 0.44 -0.7
932,453 - CCNA_00856 0.44 +0.2
932,505 + CCNA_00856 0.48 -0.1
932,523 + CCNA_00856 0.49 +0.7
932,530 + CCNA_00856 0.49 -0.9

Or see this region's nucleotide sequence