Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00845

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00843 and CCNA_00844 are separated by 75 nucleotidesCCNA_00844 and CCNA_00845 overlap by 4 nucleotidesCCNA_00845 and CCNA_00846 are separated by 38 nucleotides CCNA_00843: CCNA_00843 - endo-beta-mannanase, at 915,317 to 916,645 _00843 CCNA_00844: CCNA_00844 - toxin protein relE-1, at 916,721 to 917,002 _00844 CCNA_00845: CCNA_00845 - antitoxin protein relB-1, at 916,999 to 917,262 _00845 CCNA_00846: CCNA_00846 - proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase, at 917,301 to 920,390 _00846 Position (kb) 916 917 918Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 916.052 kb on + strand, within CCNA_00843at 916.060 kb on - strand, within CCNA_00843at 916.094 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strandat 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.104 kb on + strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.112 kb on - strand, within CCNA_00843at 916.142 kb on + strand, within CCNA_00843at 916.150 kb on - strand, within CCNA_00843at 916.150 kb on - strand, within CCNA_00843at 916.162 kb on + strand, within CCNA_00843at 916.198 kb on - strand, within CCNA_00843at 916.257 kb on - strand, within CCNA_00843at 916.279 kb on + strand, within CCNA_00843at 916.279 kb on + strand, within CCNA_00843at 916.287 kb on - strand, within CCNA_00843at 916.287 kb on - strand, within CCNA_00843at 916.287 kb on - strand, within CCNA_00843at 916.293 kb on + strand, within CCNA_00843at 916.293 kb on + strand, within CCNA_00843at 916.293 kb on + strand, within CCNA_00843at 916.293 kb on + strand, within CCNA_00843at 916.293 kb on + strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.301 kb on - strand, within CCNA_00843at 916.308 kb on + strand, within CCNA_00843at 916.308 kb on + strand, within CCNA_00843at 916.316 kb on + strand, within CCNA_00843at 916.316 kb on - strand, within CCNA_00843at 916.316 kb on - strand, within CCNA_00843at 916.316 kb on - strand, within CCNA_00843at 916.316 kb on - strand, within CCNA_00843at 916.367 kb on + strand, within CCNA_00843at 916.374 kb on + strand, within CCNA_00843at 916.393 kb on + strand, within CCNA_00843at 916.393 kb on + strand, within CCNA_00843at 916.393 kb on + strand, within CCNA_00843at 916.401 kb on - strand, within CCNA_00843at 916.401 kb on - strand, within CCNA_00843at 916.403 kb on + strand, within CCNA_00843at 916.404 kb on + strand, within CCNA_00843at 916.404 kb on - strand, within CCNA_00843at 916.410 kb on + strand, within CCNA_00843at 916.421 kb on + strand, within CCNA_00843at 916.421 kb on + strand, within CCNA_00843at 916.427 kb on - strand, within CCNA_00843at 916.433 kb on + strand, within CCNA_00843at 916.442 kb on + strand, within CCNA_00843at 916.450 kb on + strand, within CCNA_00843at 916.482 kb on + strand, within CCNA_00843at 916.516 kb on - strandat 916.516 kb on - strandat 916.552 kb on + strandat 916.568 kb on - strandat 916.639 kb on + strandat 916.662 kb on + strandat 916.662 kb on + strandat 916.662 kb on + strandat 916.662 kb on + strandat 916.662 kb on + strandat 916.662 kb on + strandat 916.670 kb on - strandat 916.670 kb on - strandat 916.671 kb on - strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.729 kb on + strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.737 kb on - strandat 916.740 kb on + strandat 916.748 kb on - strandat 916.756 kb on + strand, within CCNA_00844at 916.812 kb on - strand, within CCNA_00844at 916.822 kb on + strand, within CCNA_00844at 916.889 kb on + strand, within CCNA_00844at 916.889 kb on + strand, within CCNA_00844at 916.889 kb on + strand, within CCNA_00844at 916.889 kb on + strand, within CCNA_00844at 916.889 kb on + strand, within CCNA_00844at 916.897 kb on - strand, within CCNA_00844at 916.901 kb on + strand, within CCNA_00844at 916.902 kb on - strand, within CCNA_00844at 916.917 kb on + strand, within CCNA_00844at 916.925 kb on - strand, within CCNA_00844at 916.936 kb on - strand, within CCNA_00844at 916.941 kb on - strand, within CCNA_00844at 916.965 kb on + strand, within CCNA_00844at 916.997 kb on + strandat 917.023 kb on + strandat 917.023 kb on + strandat 917.023 kb on + strandat 917.031 kb on - strand, within CCNA_00845at 917.031 kb on - strand, within CCNA_00845at 917.031 kb on - strand, within CCNA_00845at 917.033 kb on + strand, within CCNA_00845at 917.148 kb on - strand, within CCNA_00845at 917.158 kb on - strand, within CCNA_00845at 917.158 kb on - strand, within CCNA_00845at 917.168 kb on - strand, within CCNA_00845at 917.183 kb on + strand, within CCNA_00845at 917.191 kb on - strand, within CCNA_00845at 917.207 kb on + strand, within CCNA_00845at 917.207 kb on + strand, within CCNA_00845at 917.215 kb on - strand, within CCNA_00845at 917.215 kb on - strand, within CCNA_00845at 917.259 kb on - strandat 917.323 kb on + strandat 917.350 kb on - strandat 917.371 kb on + strandat 917.476 kb on + strandat 917.484 kb on - strandat 917.516 kb on - strandat 917.523 kb on - strandat 917.555 kb on + strandat 917.557 kb on - strandat 917.558 kb on - strandat 917.563 kb on - strandat 917.570 kb on + strandat 917.599 kb on - strandat 917.620 kb on + strand, within CCNA_00846at 917.620 kb on + strand, within CCNA_00846at 917.630 kb on - strand, within CCNA_00846at 917.630 kb on - strand, within CCNA_00846at 917.635 kb on - strand, within CCNA_00846at 917.689 kb on + strand, within CCNA_00846at 917.724 kb on + strand, within CCNA_00846at 917.739 kb on - strand, within CCNA_00846at 917.776 kb on + strand, within CCNA_00846at 917.776 kb on + strand, within CCNA_00846at 917.784 kb on - strand, within CCNA_00846at 917.784 kb on - strand, within CCNA_00846at 917.832 kb on + strand, within CCNA_00846at 917.845 kb on - strand, within CCNA_00846at 917.845 kb on - strand, within CCNA_00846at 917.859 kb on + strand, within CCNA_00846at 917.867 kb on - strand, within CCNA_00846at 917.867 kb on - strand, within CCNA_00846at 917.867 kb on - strand, within CCNA_00846at 917.867 kb on - strand, within CCNA_00846at 917.867 kb on - strand, within CCNA_00846at 917.872 kb on - strandat 917.923 kb on - strand, within CCNA_00846at 918.050 kb on - strand, within CCNA_00846at 918.061 kb on + strand, within CCNA_00846at 918.066 kb on + strand, within CCNA_00846at 918.066 kb on + strand, within CCNA_00846at 918.066 kb on + strand, within CCNA_00846at 918.069 kb on - strand, within CCNA_00846at 918.117 kb on + strand, within CCNA_00846at 918.117 kb on + strand, within CCNA_00846at 918.125 kb on - strand, within CCNA_00846at 918.125 kb on - strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.135 kb on + strand, within CCNA_00846at 918.143 kb on - strand, within CCNA_00846at 918.143 kb on - strand, within CCNA_00846at 918.143 kb on - strand, within CCNA_00846at 918.143 kb on - strand, within CCNA_00846at 918.143 kb on - strand, within CCNA_00846at 918.154 kb on + strand, within CCNA_00846at 918.186 kb on - strand, within CCNA_00846at 918.191 kb on + strand, within CCNA_00846at 918.191 kb on + strand, within CCNA_00846at 918.191 kb on + strand, within CCNA_00846at 918.221 kb on - strand, within CCNA_00846at 918.243 kb on + strand, within CCNA_00846at 918.256 kb on + strand, within CCNA_00846

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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916,052 + CCNA_00843 0.55 -0.5
916,060 - CCNA_00843 0.56 -1.7
916,094 + CCNA_00843 0.58 +2.4
916,104 + CCNA_00843 0.59 +0.9
916,104 + CCNA_00843 0.59 +0.0
916,104 + CCNA_00843 0.59 +2.4
916,104 + CCNA_00843 0.59 -1.1
916,104 + +2.8
916,104 + CCNA_00843 0.59 +1.0
916,104 + CCNA_00843 0.59 -1.0
916,104 + CCNA_00843 0.59 -1.0
916,112 - CCNA_00843 0.60 +0.5
916,112 - CCNA_00843 0.60 -0.5
916,112 - CCNA_00843 0.60 +0.6
916,112 - CCNA_00843 0.60 +0.4
916,112 - CCNA_00843 0.60 -1.5
916,112 - CCNA_00843 0.60 -1.3
916,112 - CCNA_00843 0.60 -0.4
916,142 + CCNA_00843 0.62 -0.6
916,150 - CCNA_00843 0.63 -0.2
916,150 - CCNA_00843 0.63 -1.5
916,162 + CCNA_00843 0.64 +0.3
916,198 - CCNA_00843 0.66 -1.1
916,257 - CCNA_00843 0.71 -0.5
916,279 + CCNA_00843 0.72 +0.2
916,279 + CCNA_00843 0.72 +1.7
916,287 - CCNA_00843 0.73 -0.9
916,287 - CCNA_00843 0.73 +1.8
916,287 - CCNA_00843 0.73 +0.7
916,293 + CCNA_00843 0.73 +0.3
916,293 + CCNA_00843 0.73 +0.6
916,293 + CCNA_00843 0.73 +0.2
916,293 + CCNA_00843 0.73 -0.8
916,293 + CCNA_00843 0.73 -1.1
916,301 - CCNA_00843 0.74 +1.8
916,301 - CCNA_00843 0.74 +0.3
916,301 - CCNA_00843 0.74 -0.5
916,301 - CCNA_00843 0.74 -1.0
916,301 - CCNA_00843 0.74 +0.2
916,301 - CCNA_00843 0.74 +1.0
916,301 - CCNA_00843 0.74 +0.9
916,301 - CCNA_00843 0.74 -0.0
916,301 - CCNA_00843 0.74 +1.0
916,308 + CCNA_00843 0.75 +1.6
916,308 + CCNA_00843 0.75 -1.0
916,316 + CCNA_00843 0.75 +0.3
916,316 - CCNA_00843 0.75 +0.7
916,316 - CCNA_00843 0.75 -0.2
916,316 - CCNA_00843 0.75 -1.8
916,316 - CCNA_00843 0.75 +0.1
916,367 + CCNA_00843 0.79 +1.8
916,374 + CCNA_00843 0.80 +0.4
916,393 + CCNA_00843 0.81 +0.8
916,393 + CCNA_00843 0.81 +0.3
916,393 + CCNA_00843 0.81 -1.5
916,401 - CCNA_00843 0.82 -0.4
916,401 - CCNA_00843 0.82 +0.2
916,403 + CCNA_00843 0.82 -1.4
916,404 + CCNA_00843 0.82 -1.8
916,404 - CCNA_00843 0.82 +0.6
916,410 + CCNA_00843 0.82 +2.4
916,421 + CCNA_00843 0.83 +0.0
916,421 + CCNA_00843 0.83 -1.1
916,427 - CCNA_00843 0.84 -1.6
916,433 + CCNA_00843 0.84 +1.4
916,442 + CCNA_00843 0.85 +1.4
916,450 + CCNA_00843 0.85 +1.6
916,482 + CCNA_00843 0.88 -0.6
916,516 - +1.2
916,516 - -0.0
916,552 + +2.2
916,568 - +0.9
916,639 + -0.5
916,662 + +2.0
916,662 + +1.6
916,662 + -0.6
916,662 + +1.2
916,662 + +1.8
916,662 + +2.4
916,670 - +2.0
916,670 - +2.0
916,671 - +1.6
916,729 + -2.0
916,729 + +2.4
916,729 + -1.5
916,729 + +1.4
916,729 + +1.5
916,729 + -1.7
916,729 + +0.6
916,729 + -0.1
916,729 + -0.3
916,737 - -0.4
916,737 - +0.1
916,737 - +0.5
916,737 - +1.7
916,737 - +1.4
916,737 - +0.5
916,737 - +1.1
916,737 - +1.6
916,740 + +0.0
916,748 - -0.4
916,756 + CCNA_00844 0.12 -0.6
916,812 - CCNA_00844 0.32 +1.3
916,822 + CCNA_00844 0.36 +2.4
916,889 + CCNA_00844 0.60 +0.6
916,889 + CCNA_00844 0.60 -0.7
916,889 + CCNA_00844 0.60 -0.2
916,889 + CCNA_00844 0.60 +0.9
916,889 + CCNA_00844 0.60 -0.9
916,897 - CCNA_00844 0.62 -1.6
916,901 + CCNA_00844 0.64 -1.0
916,902 - CCNA_00844 0.64 +2.8
916,917 + CCNA_00844 0.70 +1.8
916,925 - CCNA_00844 0.72 +0.6
916,936 - CCNA_00844 0.76 -0.8
916,941 - CCNA_00844 0.78 +0.3
916,965 + CCNA_00844 0.87 +1.0
916,997 + -0.8
917,023 + +1.8
917,023 + +1.0
917,023 + -1.0
917,031 - CCNA_00845 0.12 +0.9
917,031 - CCNA_00845 0.12 +1.2
917,031 - CCNA_00845 0.12 -0.9
917,033 + CCNA_00845 0.13 +0.8
917,148 - CCNA_00845 0.56 +1.6
917,158 - CCNA_00845 0.60 +3.2
917,158 - CCNA_00845 0.60 +1.4
917,168 - CCNA_00845 0.64 +4.4
917,183 + CCNA_00845 0.70 +0.6
917,191 - CCNA_00845 0.73 +1.4
917,207 + CCNA_00845 0.79 -0.4
917,207 + CCNA_00845 0.79 -0.3
917,215 - CCNA_00845 0.82 +2.7
917,215 - CCNA_00845 0.82 +1.5
917,259 - +3.4
917,323 + -0.1
917,350 - +3.9
917,371 + -0.6
917,476 + +4.6
917,484 - +4.0
917,516 - +4.2
917,523 - +4.0
917,555 + +1.4
917,557 - +4.1
917,558 - +4.3
917,563 - +4.3
917,570 + +0.6
917,599 - +4.2
917,620 + CCNA_00846 0.10 +1.2
917,620 + CCNA_00846 0.10 -0.3
917,630 - CCNA_00846 0.11 +4.2
917,630 - CCNA_00846 0.11 +3.8
917,635 - CCNA_00846 0.11 +4.6
917,689 + CCNA_00846 0.13 -0.7
917,724 + CCNA_00846 0.14 +1.4
917,739 - CCNA_00846 0.14 +3.7
917,776 + CCNA_00846 0.15 -0.3
917,776 + CCNA_00846 0.15 +0.6
917,784 - CCNA_00846 0.16 +3.7
917,784 - CCNA_00846 0.16 +4.3
917,832 + CCNA_00846 0.17 +1.0
917,845 - CCNA_00846 0.18 +2.9
917,845 - CCNA_00846 0.18 +4.3
917,859 + CCNA_00846 0.18 +0.5
917,867 - CCNA_00846 0.18 +4.2
917,867 - CCNA_00846 0.18 +4.3
917,867 - CCNA_00846 0.18 +4.1
917,867 - CCNA_00846 0.18 +4.2
917,867 - CCNA_00846 0.18 +3.7
917,872 - +4.8
917,923 - CCNA_00846 0.20 +3.7
918,050 - CCNA_00846 0.24 +4.1
918,061 + CCNA_00846 0.25 +2.0
918,066 + CCNA_00846 0.25 -0.3
918,066 + CCNA_00846 0.25 -1.1
918,066 + CCNA_00846 0.25 +0.4
918,069 - CCNA_00846 0.25 +4.3
918,117 + CCNA_00846 0.26 +0.6
918,117 + CCNA_00846 0.26 +0.7
918,125 - CCNA_00846 0.27 +4.6
918,125 - CCNA_00846 0.27 +4.2
918,135 + CCNA_00846 0.27 +0.6
918,135 + CCNA_00846 0.27 -0.2
918,135 + CCNA_00846 0.27 -1.2
918,135 + CCNA_00846 0.27 +0.2
918,135 + CCNA_00846 0.27 -0.6
918,135 + CCNA_00846 0.27 +1.0
918,135 + CCNA_00846 0.27 -2.2
918,135 + CCNA_00846 0.27 +2.0
918,135 + CCNA_00846 0.27 -0.6
918,143 - CCNA_00846 0.27 +4.3
918,143 - CCNA_00846 0.27 +4.4
918,143 - CCNA_00846 0.27 +4.2
918,143 - CCNA_00846 0.27 +4.2
918,143 - CCNA_00846 0.27 +3.4
918,154 + CCNA_00846 0.28 +1.0
918,186 - CCNA_00846 0.29 +4.2
918,191 + CCNA_00846 0.29 +0.9
918,191 + CCNA_00846 0.29 +0.6
918,191 + CCNA_00846 0.29 -0.7
918,221 - CCNA_00846 0.30 +4.0
918,243 + CCNA_00846 0.30 +1.3
918,256 + CCNA_00846 0.31 -0.1

Or see this region's nucleotide sequence