Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00825

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00823 and CCNA_00824 are separated by 81 nucleotidesCCNA_00824 and CCNA_00825 are separated by 162 nucleotidesCCNA_00825 and CCNA_00826 overlap by 4 nucleotides CCNA_00823: CCNA_00823 - LuxR-like DNA-binding protein, at 884,441 to 885,244 _00823 CCNA_00824: CCNA_00824 - GntR-family transcriptional regulator, at 885,326 to 886,054 _00824 CCNA_00825: CCNA_00825 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 886,217 to 886,825 _00825 CCNA_00826: CCNA_00826 - 2-dehydro-3-deoxygalactonokinase, at 886,822 to 887,742 _00826 Position (kb) 886 887Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 885.223 kb on + strandat 885.227 kb on + strandat 885.264 kb on + strandat 885.274 kb on - strandat 885.325 kb on + strandat 885.463 kb on - strand, within CCNA_00824at 885.482 kb on - strand, within CCNA_00824at 885.486 kb on + strand, within CCNA_00824at 885.494 kb on - strand, within CCNA_00824at 885.534 kb on + strand, within CCNA_00824at 885.534 kb on + strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.542 kb on - strand, within CCNA_00824at 885.543 kb on + strand, within CCNA_00824at 885.567 kb on + strand, within CCNA_00824at 885.664 kb on - strand, within CCNA_00824at 885.664 kb on - strand, within CCNA_00824at 885.694 kb on - strand, within CCNA_00824at 885.792 kb on + strand, within CCNA_00824at 885.795 kb on - strand, within CCNA_00824at 885.795 kb on - strand, within CCNA_00824at 885.795 kb on - strand, within CCNA_00824at 885.813 kb on - strand, within CCNA_00824at 885.818 kb on - strand, within CCNA_00824at 885.819 kb on + strand, within CCNA_00824at 885.831 kb on + strand, within CCNA_00824at 885.831 kb on + strand, within CCNA_00824at 885.839 kb on - strand, within CCNA_00824at 885.849 kb on + strand, within CCNA_00824at 885.852 kb on - strand, within CCNA_00824at 885.862 kb on - strand, within CCNA_00824at 885.867 kb on + strand, within CCNA_00824at 885.867 kb on + strand, within CCNA_00824at 885.880 kb on - strand, within CCNA_00824at 885.880 kb on - strand, within CCNA_00824at 885.927 kb on + strand, within CCNA_00824at 885.937 kb on + strand, within CCNA_00824at 885.944 kb on - strand, within CCNA_00824at 885.945 kb on - strand, within CCNA_00824at 885.946 kb on + strand, within CCNA_00824at 886.018 kb on + strandat 886.018 kb on + strandat 886.018 kb on + strandat 886.018 kb on + strandat 886.019 kb on + strandat 886.024 kb on + strandat 886.034 kb on - strandat 886.038 kb on - strandat 886.049 kb on - strandat 886.092 kb on - strandat 886.099 kb on + strandat 886.099 kb on + strandat 886.107 kb on - strandat 886.107 kb on - strandat 886.109 kb on + strandat 886.113 kb on + strandat 886.118 kb on + strandat 886.121 kb on - strandat 886.146 kb on + strandat 886.146 kb on + strandat 886.146 kb on + strandat 886.148 kb on + strandat 886.154 kb on - strandat 886.154 kb on - strandat 886.154 kb on - strandat 886.154 kb on - strandat 886.156 kb on - strandat 886.294 kb on - strand, within CCNA_00825at 886.336 kb on + strand, within CCNA_00825at 886.355 kb on + strand, within CCNA_00825at 886.359 kb on - strand, within CCNA_00825at 886.368 kb on + strand, within CCNA_00825at 886.373 kb on + strand, within CCNA_00825at 886.376 kb on - strand, within CCNA_00825at 886.388 kb on + strand, within CCNA_00825at 886.388 kb on + strand, within CCNA_00825at 886.398 kb on + strand, within CCNA_00825at 886.406 kb on - strand, within CCNA_00825at 886.407 kb on + strand, within CCNA_00825at 886.407 kb on + strand, within CCNA_00825at 886.407 kb on + strand, within CCNA_00825at 886.407 kb on + strand, within CCNA_00825at 886.412 kb on + strand, within CCNA_00825at 886.415 kb on - strand, within CCNA_00825at 886.415 kb on - strand, within CCNA_00825at 886.447 kb on + strand, within CCNA_00825at 886.484 kb on + strand, within CCNA_00825at 886.540 kb on + strand, within CCNA_00825at 886.568 kb on - strand, within CCNA_00825at 886.569 kb on - strand, within CCNA_00825at 886.619 kb on + strand, within CCNA_00825at 886.619 kb on + strand, within CCNA_00825at 886.624 kb on + strand, within CCNA_00825at 886.627 kb on - strand, within CCNA_00825at 886.627 kb on - strand, within CCNA_00825at 886.627 kb on - strand, within CCNA_00825at 886.627 kb on - strand, within CCNA_00825at 886.643 kb on - strand, within CCNA_00825at 886.643 kb on - strand, within CCNA_00825at 886.652 kb on + strand, within CCNA_00825at 886.660 kb on - strand, within CCNA_00825at 886.662 kb on - strand, within CCNA_00825at 886.670 kb on - strand, within CCNA_00825at 886.687 kb on + strand, within CCNA_00825at 886.693 kb on + strand, within CCNA_00825at 886.693 kb on + strand, within CCNA_00825at 886.701 kb on - strand, within CCNA_00825at 886.703 kb on + strand, within CCNA_00825at 886.706 kb on - strand, within CCNA_00825at 886.711 kb on - strand, within CCNA_00825at 886.711 kb on - strand, within CCNA_00825at 886.734 kb on + strand, within CCNA_00825at 886.734 kb on + strand, within CCNA_00825at 886.737 kb on - strand, within CCNA_00825at 886.739 kb on + strand, within CCNA_00825at 886.793 kb on + strandat 886.803 kb on - strandat 886.805 kb on + strandat 886.805 kb on + strandat 886.808 kb on - strandat 886.813 kb on - strandat 886.813 kb on - strandat 886.813 kb on - strandat 886.834 kb on + strandat 886.847 kb on - strandat 886.877 kb on + strandat 886.921 kb on + strand, within CCNA_00826at 886.929 kb on - strand, within CCNA_00826at 886.929 kb on - strand, within CCNA_00826at 886.929 kb on - strand, within CCNA_00826at 886.947 kb on + strand, within CCNA_00826at 886.964 kb on + strandat 886.970 kb on + strand, within CCNA_00826at 886.974 kb on + strand, within CCNA_00826at 886.980 kb on + strand, within CCNA_00826at 886.980 kb on + strand, within CCNA_00826at 886.980 kb on - strand, within CCNA_00826at 886.982 kb on - strand, within CCNA_00826at 886.985 kb on + strand, within CCNA_00826at 886.985 kb on + strand, within CCNA_00826at 886.985 kb on + strand, within CCNA_00826at 886.985 kb on + strand, within CCNA_00826at 886.985 kb on + strand, within CCNA_00826at 886.993 kb on - strand, within CCNA_00826at 886.993 kb on - strand, within CCNA_00826at 886.993 kb on - strand, within CCNA_00826at 886.993 kb on - strand, within CCNA_00826at 887.007 kb on + strand, within CCNA_00826at 887.015 kb on - strand, within CCNA_00826at 887.047 kb on - strand, within CCNA_00826at 887.093 kb on + strand, within CCNA_00826at 887.130 kb on - strand, within CCNA_00826at 887.132 kb on - strand, within CCNA_00826at 887.144 kb on - strand, within CCNA_00826at 887.156 kb on - strand, within CCNA_00826at 887.157 kb on - strand, within CCNA_00826at 887.157 kb on - strand, within CCNA_00826at 887.168 kb on + strand, within CCNA_00826at 887.182 kb on + strand, within CCNA_00826at 887.199 kb on + strand, within CCNA_00826at 887.199 kb on + strand, within CCNA_00826at 887.202 kb on - strand, within CCNA_00826at 887.207 kb on - strand, within CCNA_00826at 887.207 kb on - strand, within CCNA_00826at 887.207 kb on - strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.210 kb on + strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.218 kb on - strand, within CCNA_00826at 887.220 kb on + strand, within CCNA_00826at 887.220 kb on + strand, within CCNA_00826at 887.227 kb on + strand, within CCNA_00826at 887.246 kb on + strand, within CCNA_00826at 887.254 kb on - strand, within CCNA_00826at 887.254 kb on - strand, within CCNA_00826at 887.263 kb on - strand, within CCNA_00826at 887.278 kb on - strand, within CCNA_00826at 887.298 kb on - strand, within CCNA_00826at 887.305 kb on - strand, within CCNA_00826at 887.344 kb on + strand, within CCNA_00826at 887.370 kb on - strand, within CCNA_00826at 887.422 kb on + strand, within CCNA_00826at 887.424 kb on - strand, within CCNA_00826at 887.424 kb on - strand, within CCNA_00826at 887.430 kb on - strandat 887.517 kb on + strand, within CCNA_00826at 887.532 kb on + strand, within CCNA_00826at 887.564 kb on - strand, within CCNA_00826at 887.566 kb on + strand, within CCNA_00826at 887.566 kb on + strand, within CCNA_00826at 887.574 kb on - strand, within CCNA_00826at 887.598 kb on + strand, within CCNA_00826at 887.598 kb on + strand, within CCNA_00826at 887.598 kb on + strand, within CCNA_00826at 887.606 kb on - strand, within CCNA_00826at 887.608 kb on + strand, within CCNA_00826at 887.613 kb on + strand, within CCNA_00826at 887.621 kb on - strand, within CCNA_00826at 887.626 kb on + strand, within CCNA_00826at 887.631 kb on + strand, within CCNA_00826at 887.634 kb on - strand, within CCNA_00826at 887.634 kb on - strand, within CCNA_00826at 887.640 kb on + strand, within CCNA_00826at 887.648 kb on - strand, within CCNA_00826at 887.648 kb on - strand, within CCNA_00826at 887.648 kb on - strand, within CCNA_00826at 887.648 kb on - strand, within CCNA_00826at 887.659 kb on + strandat 887.677 kb on - strandat 887.697 kb on + strandat 887.705 kb on - strandat 887.731 kb on + strandat 887.731 kb on + strandat 887.731 kb on + strandat 887.739 kb on - strandat 887.739 kb on - strandat 887.746 kb on + strandat 887.758 kb on + strandat 887.764 kb on - strandat 887.766 kb on - strandat 887.766 kb on - strandat 887.768 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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885,223 + -2.0
885,227 + -1.9
885,264 + -1.6
885,274 - +3.7
885,325 + -0.7
885,463 - CCNA_00824 0.19 +2.7
885,482 - CCNA_00824 0.21 +1.3
885,486 + CCNA_00824 0.22 +1.1
885,494 - CCNA_00824 0.23 -0.7
885,534 + CCNA_00824 0.29 +0.7
885,534 + CCNA_00824 0.29 -0.6
885,542 - CCNA_00824 0.30 +0.9
885,542 - CCNA_00824 0.30 +0.7
885,542 - CCNA_00824 0.30 -0.1
885,542 - CCNA_00824 0.30 +0.1
885,542 - CCNA_00824 0.30 +1.4
885,542 - CCNA_00824 0.30 +0.0
885,542 - CCNA_00824 0.30 +1.3
885,543 + CCNA_00824 0.30 +1.2
885,567 + CCNA_00824 0.33 +0.8
885,664 - CCNA_00824 0.46 +0.3
885,664 - CCNA_00824 0.46 +2.2
885,694 - CCNA_00824 0.50 +1.1
885,792 + CCNA_00824 0.64 +3.1
885,795 - CCNA_00824 0.64 +0.6
885,795 - CCNA_00824 0.64 +0.3
885,795 - CCNA_00824 0.64 +1.1
885,813 - CCNA_00824 0.67 -0.2
885,818 - CCNA_00824 0.67 -1.2
885,819 + CCNA_00824 0.68 +0.7
885,831 + CCNA_00824 0.69 -0.1
885,831 + CCNA_00824 0.69 -1.4
885,839 - CCNA_00824 0.70 +1.1
885,849 + CCNA_00824 0.72 +0.4
885,852 - CCNA_00824 0.72 +1.9
885,862 - CCNA_00824 0.74 +1.9
885,867 + CCNA_00824 0.74 +0.3
885,867 + CCNA_00824 0.74 +0.4
885,880 - CCNA_00824 0.76 +0.8
885,880 - CCNA_00824 0.76 +1.4
885,927 + CCNA_00824 0.82 +2.8
885,937 + CCNA_00824 0.84 -0.5
885,944 - CCNA_00824 0.85 +2.8
885,945 - CCNA_00824 0.85 +0.9
885,946 + CCNA_00824 0.85 -0.1
886,018 + -2.6
886,018 + -0.8
886,018 + +0.9
886,018 + +1.2
886,019 + +0.3
886,024 + -0.4
886,034 - +2.0
886,038 - +2.6
886,049 - +1.8
886,092 - +0.5
886,099 + -0.9
886,099 + -0.1
886,107 - -0.2
886,107 - +1.2
886,109 + +0.8
886,113 + +0.5
886,118 + -0.3
886,121 - +0.0
886,146 + -1.4
886,146 + +0.8
886,146 + +0.2
886,148 + -0.1
886,154 - -2.0
886,154 - +2.2
886,154 - -1.0
886,154 - +1.8
886,156 - +0.0
886,294 - CCNA_00825 0.13 +0.2
886,336 + CCNA_00825 0.20 +0.0
886,355 + CCNA_00825 0.23 -0.5
886,359 - CCNA_00825 0.23 +0.8
886,368 + CCNA_00825 0.25 +1.0
886,373 + CCNA_00825 0.26 +0.3
886,376 - CCNA_00825 0.26 -1.2
886,388 + CCNA_00825 0.28 -1.9
886,388 + CCNA_00825 0.28 -0.3
886,398 + CCNA_00825 0.30 +1.6
886,406 - CCNA_00825 0.31 +0.2
886,407 + CCNA_00825 0.31 +4.9
886,407 + CCNA_00825 0.31 +4.8
886,407 + CCNA_00825 0.31 +4.9
886,407 + CCNA_00825 0.31 +4.8
886,412 + CCNA_00825 0.32 +0.6
886,415 - CCNA_00825 0.33 +0.0
886,415 - CCNA_00825 0.33 +1.6
886,447 + CCNA_00825 0.38 -1.6
886,484 + CCNA_00825 0.44 +0.4
886,540 + CCNA_00825 0.53 +1.0
886,568 - CCNA_00825 0.58 -0.5
886,569 - CCNA_00825 0.58 -0.2
886,619 + CCNA_00825 0.66 +1.4
886,619 + CCNA_00825 0.66 -0.9
886,624 + CCNA_00825 0.67 -0.7
886,627 - CCNA_00825 0.67 -1.0
886,627 - CCNA_00825 0.67 -1.4
886,627 - CCNA_00825 0.67 +2.8
886,627 - CCNA_00825 0.67 -0.4
886,643 - CCNA_00825 0.70 -1.3
886,643 - CCNA_00825 0.70 +1.2
886,652 + CCNA_00825 0.71 -0.6
886,660 - CCNA_00825 0.73 +0.3
886,662 - CCNA_00825 0.73 -1.3
886,670 - CCNA_00825 0.74 -0.5
886,687 + CCNA_00825 0.77 -1.5
886,693 + CCNA_00825 0.78 +0.6
886,693 + CCNA_00825 0.78 -0.4
886,701 - CCNA_00825 0.79 +0.8
886,703 + CCNA_00825 0.80 -1.1
886,706 - CCNA_00825 0.80 -0.2
886,711 - CCNA_00825 0.81 -1.5
886,711 - CCNA_00825 0.81 +0.5
886,734 + CCNA_00825 0.85 +0.4
886,734 + CCNA_00825 0.85 +0.2
886,737 - CCNA_00825 0.85 -0.2
886,739 + CCNA_00825 0.86 +0.1
886,793 + -0.9
886,803 - +1.8
886,805 + -0.4
886,805 + -0.3
886,808 - +0.5
886,813 - -0.8
886,813 - +2.4
886,813 - +1.0
886,834 + +2.4
886,847 - -0.0
886,877 + +2.4
886,921 + CCNA_00826 0.11 +1.1
886,929 - CCNA_00826 0.12 +1.8
886,929 - CCNA_00826 0.12 +2.0
886,929 - CCNA_00826 0.12 -1.1
886,947 + CCNA_00826 0.14 +0.4
886,964 + +2.8
886,970 + CCNA_00826 0.16 -1.2
886,974 + CCNA_00826 0.17 -1.7
886,980 + CCNA_00826 0.17 +0.2
886,980 + CCNA_00826 0.17 +0.3
886,980 - CCNA_00826 0.17 -0.0
886,982 - CCNA_00826 0.17 +0.5
886,985 + CCNA_00826 0.18 -0.8
886,985 + CCNA_00826 0.18 +0.3
886,985 + CCNA_00826 0.18 -0.4
886,985 + CCNA_00826 0.18 -0.3
886,985 + CCNA_00826 0.18 -0.6
886,993 - CCNA_00826 0.19 -0.6
886,993 - CCNA_00826 0.19 -2.5
886,993 - CCNA_00826 0.19 -0.4
886,993 - CCNA_00826 0.19 -0.6
887,007 + CCNA_00826 0.20 -1.7
887,015 - CCNA_00826 0.21 -0.3
887,047 - CCNA_00826 0.24 -1.8
887,093 + CCNA_00826 0.29 -0.0
887,130 - CCNA_00826 0.33 +0.3
887,132 - CCNA_00826 0.34 +0.8
887,144 - CCNA_00826 0.35 -0.9
887,156 - CCNA_00826 0.36 -0.5
887,157 - CCNA_00826 0.36 +1.3
887,157 - CCNA_00826 0.36 +0.4
887,168 + CCNA_00826 0.38 -1.0
887,182 + CCNA_00826 0.39 -0.5
887,199 + CCNA_00826 0.41 +1.0
887,199 + CCNA_00826 0.41 -1.3
887,202 - CCNA_00826 0.41 -2.7
887,207 - CCNA_00826 0.42 -0.3
887,207 - CCNA_00826 0.42 +0.0
887,207 - CCNA_00826 0.42 +2.0
887,210 + CCNA_00826 0.42 -0.8
887,210 + CCNA_00826 0.42 -0.2
887,210 + CCNA_00826 0.42 -1.2
887,210 + CCNA_00826 0.42 +0.2
887,210 + CCNA_00826 0.42 -0.4
887,210 + CCNA_00826 0.42 +1.6
887,210 + CCNA_00826 0.42 -2.2
887,210 + CCNA_00826 0.42 +1.7
887,210 + CCNA_00826 0.42 +1.1
887,210 + CCNA_00826 0.42 +0.1
887,210 + CCNA_00826 0.42 -0.3
887,210 + CCNA_00826 0.42 +0.7
887,210 + CCNA_00826 0.42 -1.0
887,210 + CCNA_00826 0.42 -0.0
887,210 + CCNA_00826 0.42 -0.3
887,210 + CCNA_00826 0.42 -0.2
887,218 - CCNA_00826 0.43 +0.2
887,218 - CCNA_00826 0.43 +1.0
887,218 - CCNA_00826 0.43 +0.4
887,218 - CCNA_00826 0.43 -1.1
887,218 - CCNA_00826 0.43 -1.4
887,218 - CCNA_00826 0.43 -0.1
887,218 - CCNA_00826 0.43 -0.4
887,218 - CCNA_00826 0.43 +0.7
887,218 - CCNA_00826 0.43 -0.7
887,218 - CCNA_00826 0.43 +0.8
887,218 - CCNA_00826 0.43 -0.9
887,220 + CCNA_00826 0.43 -1.1
887,220 + CCNA_00826 0.43 -0.0
887,227 + CCNA_00826 0.44 +0.5
887,246 + CCNA_00826 0.46 +2.0
887,254 - CCNA_00826 0.47 -1.3
887,254 - CCNA_00826 0.47 +1.0
887,263 - CCNA_00826 0.48 -0.6
887,278 - CCNA_00826 0.50 +0.4
887,298 - CCNA_00826 0.52 -1.4
887,305 - CCNA_00826 0.52 -0.5
887,344 + CCNA_00826 0.57 +1.3
887,370 - CCNA_00826 0.60 -1.0
887,422 + CCNA_00826 0.65 +0.4
887,424 - CCNA_00826 0.65 -0.6
887,424 - CCNA_00826 0.65 +1.0
887,430 - +2.0
887,517 + CCNA_00826 0.75 -1.1
887,532 + CCNA_00826 0.77 -0.6
887,564 - CCNA_00826 0.81 -1.4
887,566 + CCNA_00826 0.81 +1.4
887,566 + CCNA_00826 0.81 +0.5
887,574 - CCNA_00826 0.82 +3.1
887,598 + CCNA_00826 0.84 +0.9
887,598 + CCNA_00826 0.84 +0.8
887,598 + CCNA_00826 0.84 +0.3
887,606 - CCNA_00826 0.85 -0.8
887,608 + CCNA_00826 0.85 -0.3
887,613 + CCNA_00826 0.86 -1.9
887,621 - CCNA_00826 0.87 -0.1
887,626 + CCNA_00826 0.87 +1.8
887,631 + CCNA_00826 0.88 +0.4
887,634 - CCNA_00826 0.88 +1.2
887,634 - CCNA_00826 0.88 -0.6
887,640 + CCNA_00826 0.89 -1.3
887,648 - CCNA_00826 0.90 -0.5
887,648 - CCNA_00826 0.90 +1.0
887,648 - CCNA_00826 0.90 -0.4
887,648 - CCNA_00826 0.90 +1.6
887,659 + -1.4
887,677 - +1.6
887,697 + +0.1
887,705 - -0.4
887,731 + +0.3
887,731 + -0.7
887,731 + +1.3
887,739 - +1.1
887,739 - -2.2
887,746 + -0.2
887,758 + -0.8
887,764 - +0.4
887,766 - +1.4
887,766 - -0.3
887,768 + -0.2

Or see this region's nucleotide sequence