Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00787 and CCNA_00788 are separated by 133 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 849.592 kb on - strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.661 kb on + strand, within CCNA_00785 at 849.669 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.769 kb on - strand at 849.857 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.872 kb on - strand at 849.879 kb on - strand at 849.880 kb on - strand at 849.880 kb on - strand at 849.928 kb on + strand at 849.935 kb on + strand at 849.943 kb on - strand at 849.948 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.966 kb on - strand at 849.966 kb on - strand at 849.977 kb on + strand at 849.989 kb on + strand at 850.035 kb on - strand at 850.035 kb on - strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.045 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.062 kb on - strand at 850.062 kb on - strand at 850.080 kb on + strand at 850.081 kb on + strand at 850.089 kb on - strand at 850.099 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.158 kb on - strand, within CCNA_03938 at 850.273 kb on + strand, within CCNA_03938 at 850.280 kb on - strand, within CCNA_03938 at 850.281 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.321 kb on + strand, within CCNA_03938 at 850.327 kb on + strand, within CCNA_03938 at 850.353 kb on + strand, within CCNA_03938 at 850.391 kb on - strand, within CCNA_03938 at 850.424 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.431 kb on + strand at 850.438 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.517 kb on - strand at 850.526 kb on + strand at 850.554 kb on - strand at 850.582 kb on + strand at 850.726 kb on + strand, within CCNA_00787 at 850.760 kb on + strand, within CCNA_00787 at 850.761 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.776 kb on - strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.855 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.953 kb on - strand, within CCNA_00787 at 850.981 kb on + strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.022 kb on - strand, within CCNA_00787 at 851.027 kb on + strand, within CCNA_00787 at 851.033 kb on + strand, within CCNA_00787 at 851.035 kb on - strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.080 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.183 kb on + strand, within CCNA_00787 at 851.183 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.201 kb on + strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.207 kb on + strand, within CCNA_00787 at 851.208 kb on - strand, within CCNA_00787 at 851.243 kb on + strand, within CCNA_00787 at 851.248 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.309 kb on + strand, within CCNA_00787 at 851.337 kb on - strand at 851.350 kb on - strand at 851.373 kb on + strand at 851.373 kb on + strand at 851.381 kb on - strand at 851.399 kb on - strand at 851.419 kb on + strand at 851.525 kb on + strand at 851.537 kb on + strand at 851.545 kb on - strand at 851.575 kb on - strand at 851.632 kb on + strand at 851.657 kb on - strand at 851.708 kb on - strand, within CCNA_00788 at 851.730 kb on + strand, within CCNA_00788 at 851.730 kb on + strand, within CCNA_00788 at 851.743 kb on - strand, within CCNA_00788 at 851.751 kb on + strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.773 kb on - strand, within CCNA_00788 at 851.780 kb on + strand, within CCNA_00788 at 851.801 kb on - strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.831 kb on - strand, within CCNA_00788 at 851.842 kb on + strand, within CCNA_00788 at 851.842 kb on + strand, within CCNA_00788 at 851.857 kb on + strand, within CCNA_00788 at 851.865 kb on - strand, within CCNA_00788 at 851.870 kb on - strand, within CCNA_00788 at 851.875 kb on - strand, within CCNA_00788 at 851.888 kb on + strand, within CCNA_00788 at 851.888 kb on + strand, within CCNA_00788 at 851.891 kb on - strand, within CCNA_00788 at 851.896 kb on - strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.981 kb on + strand, within CCNA_00788 at 851.989 kb on - strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand at 852.050 kb on - strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.088 kb on - strand, within CCNA_00788 at 852.088 kb on - strand, within CCNA_00788 at 852.093 kb on - strand, within CCNA_00788 at 852.095 kb on + strand, within CCNA_00788 at 852.098 kb on - strand, within CCNA_00788 at 852.103 kb on - strand, within CCNA_00788 at 852.103 kb on - strand, within CCNA_00788 at 852.206 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.266 kb on - strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.314 kb on + strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.326 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.352 kb on - strand, within CCNA_00788 at 852.360 kb on + strand, within CCNA_00788 at 852.377 kb on + strand, within CCNA_00788 at 852.387 kb on + strand, within CCNA_00788 at 852.395 kb on - strand, within CCNA_00788
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 849,592 - CCNA_00785 0.81 +1.5 849,602 + CCNA_00785 0.81 -0.2 849,602 + CCNA_00785 0.81 +1.4 849,610 - CCNA_00785 0.82 +2.0 849,610 - CCNA_00785 0.82 +1.1 849,624 - CCNA_00785 0.83 +1.0 849,624 - CCNA_00785 0.83 -0.3 849,661 + CCNA_00785 0.85 -0.1 849,669 + CCNA_00785 0.85 +0.6 849,677 - CCNA_00785 0.86 +1.6 849,729 + CCNA_00785 0.89 +0.4 849,729 + CCNA_00785 0.89 +3.0 849,729 + CCNA_00785 0.89 +0.0 849,737 - CCNA_00785 0.89 +0.2 849,737 - CCNA_00785 0.89 +0.9 849,761 + +0.5 849,761 + +1.1 849,769 - -2.4 849,857 - +2.2 849,867 + -0.9 849,870 - +1.3 849,872 - -0.0 849,879 - +1.7 849,880 - -0.3 849,880 - -0.2 849,928 + -0.4 849,935 + -1.8 849,943 - +1.1 849,948 + -0.7 849,948 + -1.2 849,956 - +0.9 849,956 - +0.7 849,966 - +0.7 849,966 - +0.4 849,977 + +0.1 849,989 + -0.9 850,035 - +2.8 850,035 - +3.3 850,037 + +1.7 850,037 + +1.9 850,045 - +2.8 850,045 - +3.6 850,057 - +3.7 850,057 - +3.9 850,057 - +2.7 850,057 - +3.6 850,062 - +2.8 850,062 - +3.1 850,080 + +1.4 850,081 + +0.4 850,089 - +3.5 850,099 - +3.9 850,126 + -0.8 850,126 + -0.0 850,134 - +3.8 850,158 - CCNA_03938 0.13 +2.5 850,273 + CCNA_03938 0.48 +0.6 850,280 - CCNA_03938 0.50 +4.0 850,281 - CCNA_03938 0.50 +4.1 850,314 - CCNA_03938 0.61 +3.7 850,314 - CCNA_03938 0.61 +3.7 850,321 + CCNA_03938 0.63 +1.4 850,327 + CCNA_03938 0.65 -0.3 850,353 + CCNA_03938 0.72 +0.3 850,391 - CCNA_03938 0.84 +3.3 850,424 + +4.7 850,430 + +0.3 850,430 + +3.5 850,430 + +0.1 850,431 + +0.2 850,438 + +0.5 850,438 - +2.7 850,438 - +3.8 850,438 - +2.9 850,446 - +3.6 850,517 - +3.4 850,526 + -0.4 850,554 - +3.0 850,582 + +0.6 850,726 + CCNA_00787 0.20 -0.1 850,760 + CCNA_00787 0.24 +0.7 850,761 + CCNA_00787 0.24 -1.3 850,763 - CCNA_00787 0.24 +3.4 850,768 - CCNA_00787 0.25 +0.7 850,768 - CCNA_00787 0.25 +1.6 850,768 - CCNA_00787 0.25 +0.4 850,768 - CCNA_00787 0.25 -0.1 850,769 - CCNA_00787 0.25 +1.9 850,776 - CCNA_00787 0.26 +1.8 850,780 + CCNA_00787 0.26 +0.2 850,826 - CCNA_00787 0.31 -0.1 850,855 - CCNA_00787 0.35 +2.9 850,887 + CCNA_00787 0.38 +0.4 850,887 + CCNA_00787 0.38 +0.8 850,924 - CCNA_00787 0.43 +1.2 850,931 - CCNA_00787 0.43 +1.5 850,931 - CCNA_00787 0.43 +1.9 850,936 - CCNA_00787 0.44 +1.9 850,953 - CCNA_00787 0.46 +1.1 850,981 + CCNA_00787 0.49 -0.9 850,991 + CCNA_00787 0.50 -0.5 850,999 - CCNA_00787 0.51 +1.6 850,999 - CCNA_00787 0.51 +2.4 851,022 - CCNA_00787 0.54 +1.6 851,027 + CCNA_00787 0.55 -1.6 851,033 + CCNA_00787 0.55 +2.2 851,035 - CCNA_00787 0.55 +1.6 851,045 - CCNA_00787 0.57 -0.5 851,077 - CCNA_00787 0.60 +1.6 851,080 + CCNA_00787 0.61 +1.4 851,137 + CCNA_00787 0.67 +0.5 851,137 + CCNA_00787 0.67 +1.2 851,145 - CCNA_00787 0.68 +0.2 851,183 + CCNA_00787 0.73 +1.8 851,183 - CCNA_00787 0.73 +1.8 851,193 + CCNA_00787 0.74 -0.6 851,196 - CCNA_00787 0.74 +0.7 851,196 - CCNA_00787 0.74 -0.5 851,201 + CCNA_00787 0.75 +0.4 851,201 - CCNA_00787 0.75 +1.8 851,201 - CCNA_00787 0.75 +1.1 851,207 + CCNA_00787 0.75 -0.8 851,208 - CCNA_00787 0.75 +0.3 851,243 + CCNA_00787 0.79 +1.2 851,248 + CCNA_00787 0.80 +0.3 851,251 - CCNA_00787 0.80 +1.3 851,256 - CCNA_00787 0.81 +2.5 851,309 + CCNA_00787 0.87 -1.7 851,337 - +1.3 851,350 - +0.7 851,373 + +0.9 851,373 + -1.4 851,381 - +0.9 851,399 - +1.0 851,419 + +0.5 851,525 + +0.9 851,537 + +0.7 851,545 - -2.4 851,575 - +2.2 851,632 + -0.5 851,657 - +0.0 851,708 - CCNA_00788 0.12 +0.9 851,730 + CCNA_00788 0.13 -0.0 851,730 + CCNA_00788 0.13 +0.2 851,743 - CCNA_00788 0.14 -0.2 851,751 + CCNA_00788 0.15 +1.7 851,765 + CCNA_00788 0.16 -0.3 851,765 + CCNA_00788 0.16 -0.3 851,773 - CCNA_00788 0.17 +0.5 851,780 + CCNA_00788 0.17 +1.2 851,801 - CCNA_00788 0.19 +0.3 851,823 + CCNA_00788 0.20 +0.8 851,831 - CCNA_00788 0.21 +1.3 851,842 + CCNA_00788 0.22 +1.0 851,842 + CCNA_00788 0.22 -1.2 851,857 + CCNA_00788 0.23 -0.2 851,865 - CCNA_00788 0.24 +0.2 851,870 - CCNA_00788 0.24 +2.5 851,875 - CCNA_00788 0.24 -0.1 851,888 + CCNA_00788 0.25 +0.2 851,888 + CCNA_00788 0.25 +0.2 851,891 - CCNA_00788 0.26 +1.2 851,896 - CCNA_00788 0.26 +0.1 851,898 + CCNA_00788 0.26 +0.3 851,919 + CCNA_00788 0.28 +1.1 851,919 + CCNA_00788 0.28 -0.2 851,919 + CCNA_00788 0.28 +3.5 851,927 - CCNA_00788 0.28 +1.0 851,927 - CCNA_00788 0.28 +1.3 851,953 + CCNA_00788 0.30 +0.8 851,953 + CCNA_00788 0.30 -0.5 851,953 + CCNA_00788 0.30 +2.6 851,981 + CCNA_00788 0.32 +1.0 851,989 - CCNA_00788 0.33 +2.2 852,023 + CCNA_00788 0.36 +1.2 852,023 + CCNA_00788 0.36 +0.8 852,023 + CCNA_00788 0.36 -0.8 852,023 + CCNA_00788 0.36 +0.3 852,023 + CCNA_00788 0.36 +1.0 852,023 + CCNA_00788 0.36 -1.3 852,031 - CCNA_00788 0.36 -0.8 852,031 - +2.5 852,050 - CCNA_00788 0.38 +0.7 852,080 + CCNA_00788 0.40 +0.9 852,080 + CCNA_00788 0.40 +0.9 852,080 + CCNA_00788 0.40 -0.6 852,088 - CCNA_00788 0.41 -0.2 852,088 - CCNA_00788 0.41 -1.4 852,093 - CCNA_00788 0.41 +0.4 852,095 + CCNA_00788 0.41 +0.6 852,098 - CCNA_00788 0.41 +0.2 852,103 - CCNA_00788 0.42 +0.4 852,103 - CCNA_00788 0.42 -0.0 852,206 + CCNA_00788 0.50 +0.1 852,258 + CCNA_00788 0.53 -1.3 852,258 + CCNA_00788 0.53 -0.7 852,258 + CCNA_00788 0.53 -0.2 852,258 + CCNA_00788 0.53 +0.0 852,258 + CCNA_00788 0.53 -0.9 852,266 - CCNA_00788 0.54 -0.3 852,307 + CCNA_00788 0.57 +0.9 852,307 + CCNA_00788 0.57 -0.5 852,307 + CCNA_00788 0.57 +0.4 852,314 + CCNA_00788 0.58 +1.7 852,315 - CCNA_00788 0.58 +0.7 852,315 - CCNA_00788 0.58 -0.4 852,315 - CCNA_00788 0.58 +1.7 852,315 - CCNA_00788 0.58 +0.3 852,326 - CCNA_00788 0.59 -0.8 852,327 - CCNA_00788 0.59 -0.0 852,352 - CCNA_00788 0.61 +0.7 852,360 + CCNA_00788 0.61 -0.6 852,377 + CCNA_00788 0.62 -1.8 852,387 + CCNA_00788 0.63 -0.5 852,395 - CCNA_00788 0.64 +1.3
Or see this region's nucleotide sequence