Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00783 and CCNA_00784 are separated by 254 nucleotides CCNA_00784 and CCNA_00785 are separated by 252 nucleotides
CCNA_00783: CCNA_00783 - secreted protease precursor sapA, at 844,450 to 846,426
_00783
CCNA_00784: CCNA_00784 - peptidoglycan-associated outer membrane lipoprotein, at 846,681 to 847,904
_00784
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
Position (kb) 846
847
848 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 845.683 kb on + strand, within CCNA_00783 at 845.691 kb on - strand, within CCNA_00783 at 845.719 kb on - strand, within CCNA_00783 at 845.719 kb on - strand, within CCNA_00783 at 845.738 kb on + strand, within CCNA_00783 at 845.738 kb on + strand, within CCNA_00783 at 845.739 kb on - strand, within CCNA_00783 at 845.746 kb on - strand, within CCNA_00783 at 845.755 kb on + strand, within CCNA_00783 at 845.785 kb on + strand, within CCNA_00783 at 845.785 kb on + strand, within CCNA_00783 at 845.793 kb on - strand, within CCNA_00783 at 845.793 kb on - strand, within CCNA_00783 at 845.793 kb on - strand, within CCNA_00783 at 845.793 kb on - strand, within CCNA_00783 at 845.802 kb on - strand, within CCNA_00783 at 845.821 kb on + strand, within CCNA_00783 at 845.887 kb on + strand, within CCNA_00783 at 845.920 kb on + strand, within CCNA_00783 at 845.920 kb on + strand, within CCNA_00783 at 845.988 kb on - strand, within CCNA_00783 at 846.056 kb on - strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.058 kb on + strand, within CCNA_00783 at 846.077 kb on + strand, within CCNA_00783 at 846.093 kb on + strand, within CCNA_00783 at 846.093 kb on + strand, within CCNA_00783 at 846.103 kb on + strand at 846.111 kb on - strand, within CCNA_00783 at 846.111 kb on - strand, within CCNA_00783 at 846.138 kb on - strand, within CCNA_00783 at 846.148 kb on - strand, within CCNA_00783 at 846.148 kb on - strand, within CCNA_00783 at 846.208 kb on + strand, within CCNA_00783 at 846.208 kb on + strand, within CCNA_00783 at 846.208 kb on + strand, within CCNA_00783 at 846.216 kb on - strand, within CCNA_00783 at 846.216 kb on - strand, within CCNA_00783 at 846.216 kb on - strand, within CCNA_00783 at 846.242 kb on - strand at 846.277 kb on + strand at 846.293 kb on - strand at 846.340 kb on + strand at 846.348 kb on + strand at 846.351 kb on - strand at 846.399 kb on + strand at 846.399 kb on + strand at 846.406 kb on - strand at 846.406 kb on - strand at 846.419 kb on + strand at 846.419 kb on + strand at 846.419 kb on + strand at 846.427 kb on - strand at 846.443 kb on + strand at 846.443 kb on + strand at 846.443 kb on + strand at 846.451 kb on - strand at 846.451 kb on - strand at 846.461 kb on - strand at 846.509 kb on + strand at 846.509 kb on + strand at 846.517 kb on - strand at 846.517 kb on - strand at 846.524 kb on + strand at 846.525 kb on + strand at 846.525 kb on + strand at 846.532 kb on - strand at 846.532 kb on - strand at 846.533 kb on - strand at 846.533 kb on - strand at 846.578 kb on + strand at 846.616 kb on + strand at 846.616 kb on + strand at 846.649 kb on - strand at 846.722 kb on + strand at 846.744 kb on + strand at 846.754 kb on + strand at 846.805 kb on - strand, within CCNA_00784 at 846.806 kb on - strand, within CCNA_00784 at 846.814 kb on - strand, within CCNA_00784 at 846.828 kb on - strand, within CCNA_00784 at 846.837 kb on - strand, within CCNA_00784 at 846.842 kb on + strand, within CCNA_00784 at 846.857 kb on + strand, within CCNA_00784 at 846.865 kb on - strand, within CCNA_00784 at 846.908 kb on + strand, within CCNA_00784 at 846.916 kb on - strand at 846.918 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.963 kb on + strand, within CCNA_00784 at 846.966 kb on - strand, within CCNA_00784 at 846.966 kb on - strand, within CCNA_00784 at 846.971 kb on - strand, within CCNA_00784 at 846.971 kb on - strand, within CCNA_00784 at 846.971 kb on - strand, within CCNA_00784 at 846.971 kb on - strand, within CCNA_00784 at 847.032 kb on - strand, within CCNA_00784 at 847.032 kb on - strand, within CCNA_00784 at 847.041 kb on - strand, within CCNA_00784 at 847.050 kb on + strand, within CCNA_00784 at 847.052 kb on + strand, within CCNA_00784 at 847.060 kb on - strand, within CCNA_00784 at 847.066 kb on - strand, within CCNA_00784 at 847.066 kb on - strand, within CCNA_00784 at 847.068 kb on - strand, within CCNA_00784 at 847.095 kb on + strand, within CCNA_00784 at 847.137 kb on + strand, within CCNA_00784 at 847.149 kb on + strand, within CCNA_00784 at 847.154 kb on + strand, within CCNA_00784 at 847.154 kb on + strand, within CCNA_00784 at 847.160 kb on + strand, within CCNA_00784 at 847.161 kb on + strand, within CCNA_00784 at 847.161 kb on + strand, within CCNA_00784 at 847.169 kb on - strand, within CCNA_00784 at 847.180 kb on - strand, within CCNA_00784 at 847.230 kb on + strand, within CCNA_00784 at 847.230 kb on + strand, within CCNA_00784 at 847.230 kb on + strand, within CCNA_00784 at 847.230 kb on + strand, within CCNA_00784 at 847.235 kb on + strand, within CCNA_00784 at 847.243 kb on - strand, within CCNA_00784 at 847.253 kb on - strand, within CCNA_00784 at 847.253 kb on - strand, within CCNA_00784 at 847.259 kb on + strand, within CCNA_00784 at 847.266 kb on + strand, within CCNA_00784 at 847.314 kb on - strand, within CCNA_00784 at 847.321 kb on + strand, within CCNA_00784 at 847.321 kb on + strand, within CCNA_00784 at 847.329 kb on - strand, within CCNA_00784 at 847.329 kb on - strand, within CCNA_00784 at 847.372 kb on - strand, within CCNA_00784 at 847.372 kb on - strand, within CCNA_00784 at 847.426 kb on + strand, within CCNA_00784 at 847.426 kb on + strand, within CCNA_00784 at 847.426 kb on + strand, within CCNA_00784 at 847.428 kb on - strand, within CCNA_00784 at 847.434 kb on - strand, within CCNA_00784 at 847.434 kb on - strand, within CCNA_00784 at 847.434 kb on - strand at 847.434 kb on - strand, within CCNA_00784 at 847.525 kb on + strand, within CCNA_00784 at 847.561 kb on + strand, within CCNA_00784 at 847.561 kb on + strand, within CCNA_00784 at 847.561 kb on + strand, within CCNA_00784 at 847.561 kb on + strand, within CCNA_00784 at 847.561 kb on + strand, within CCNA_00784 at 847.562 kb on - strand, within CCNA_00784 at 847.562 kb on - strand, within CCNA_00784 at 847.569 kb on - strand, within CCNA_00784 at 847.604 kb on + strand, within CCNA_00784 at 847.628 kb on + strand, within CCNA_00784 at 847.655 kb on + strand, within CCNA_00784 at 847.676 kb on - strand, within CCNA_00784 at 847.678 kb on + strand, within CCNA_00784 at 847.697 kb on + strand, within CCNA_00784 at 847.741 kb on - strand, within CCNA_00784 at 847.768 kb on - strand, within CCNA_00784 at 847.780 kb on - strand, within CCNA_00784 at 847.780 kb on - strand, within CCNA_00784 at 847.782 kb on + strand at 847.782 kb on + strand at 847.790 kb on - strand at 847.790 kb on - strand at 847.790 kb on - strand at 847.818 kb on + strand at 847.818 kb on + strand at 847.852 kb on + strand at 847.871 kb on - strand at 847.871 kb on - strand at 847.887 kb on - strand at 847.891 kb on - strand at 847.909 kb on + strand at 847.965 kb on + strand at 847.970 kb on + strand at 847.978 kb on - strand at 847.978 kb on - strand at 847.978 kb on - strand at 847.978 kb on - strand at 847.985 kb on - strand at 848.035 kb on + strand at 848.035 kb on + strand at 848.035 kb on + strand at 848.043 kb on - strand at 848.043 kb on - strand at 848.043 kb on - strand at 848.051 kb on - strand at 848.055 kb on + strand at 848.092 kb on + strand at 848.092 kb on + strand at 848.100 kb on - strand at 848.116 kb on - strand at 848.180 kb on - strand at 848.180 kb on - strand at 848.182 kb on - strand at 848.215 kb on - strand at 848.215 kb on - strand at 848.285 kb on + strand at 848.285 kb on + strand at 848.293 kb on - strand at 848.411 kb on + strand, within CCNA_00785 at 848.423 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.434 kb on + strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.442 kb on - strand, within CCNA_00785 at 848.454 kb on + strand, within CCNA_00785 at 848.462 kb on - strand, within CCNA_00785 at 848.489 kb on + strand, within CCNA_00785 at 848.492 kb on - strand, within CCNA_00785 at 848.510 kb on - strand, within CCNA_00785 at 848.600 kb on + strand, within CCNA_00785 at 848.600 kb on + strand, within CCNA_00785 at 848.603 kb on - strand, within CCNA_00785 at 848.633 kb on + strand, within CCNA_00785 at 848.696 kb on - strand, within CCNA_00785 at 848.815 kb on + strand, within CCNA_00785 at 848.830 kb on + strand, within CCNA_00785 at 848.833 kb on - strand, within CCNA_00785 at 848.841 kb on + strand, within CCNA_00785 at 848.841 kb on + strand, within CCNA_00785 at 848.867 kb on - strand, within CCNA_00785 at 848.875 kb on + strand, within CCNA_00785
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 845,683 + CCNA_00783 0.62 +1.6 845,691 - CCNA_00783 0.63 -1.2 845,719 - CCNA_00783 0.64 +1.5 845,719 - CCNA_00783 0.64 +0.6 845,738 + CCNA_00783 0.65 +1.2 845,738 + CCNA_00783 0.65 +0.8 845,739 - CCNA_00783 0.65 -0.3 845,746 - CCNA_00783 0.66 +1.5 845,755 + CCNA_00783 0.66 -1.0 845,785 + CCNA_00783 0.68 +0.6 845,785 + CCNA_00783 0.68 +0.7 845,793 - CCNA_00783 0.68 +1.0 845,793 - CCNA_00783 0.68 +0.5 845,793 - CCNA_00783 0.68 +0.1 845,793 - CCNA_00783 0.68 -0.4 845,802 - CCNA_00783 0.68 +1.0 845,821 + CCNA_00783 0.69 +2.2 845,887 + CCNA_00783 0.73 -0.8 845,920 + CCNA_00783 0.74 +0.8 845,920 + CCNA_00783 0.74 +0.5 845,988 - CCNA_00783 0.78 +0.2 846,056 - CCNA_00783 0.81 -0.6 846,058 + CCNA_00783 0.81 +1.1 846,058 + CCNA_00783 0.81 +0.8 846,058 + CCNA_00783 0.81 +0.9 846,058 + CCNA_00783 0.81 -1.4 846,058 + CCNA_00783 0.81 -1.1 846,058 + CCNA_00783 0.81 -0.2 846,058 + CCNA_00783 0.81 +1.0 846,058 + CCNA_00783 0.81 +0.1 846,058 + CCNA_00783 0.81 +1.0 846,077 + CCNA_00783 0.82 +0.1 846,093 + CCNA_00783 0.83 +0.5 846,093 + CCNA_00783 0.83 -0.1 846,103 + +3.5 846,111 - CCNA_00783 0.84 -0.6 846,111 - CCNA_00783 0.84 +0.4 846,138 - CCNA_00783 0.85 +1.4 846,148 - CCNA_00783 0.86 +1.0 846,148 - CCNA_00783 0.86 +2.7 846,208 + CCNA_00783 0.89 -0.2 846,208 + CCNA_00783 0.89 +1.5 846,208 + CCNA_00783 0.89 +0.8 846,216 - CCNA_00783 0.89 +2.5 846,216 - CCNA_00783 0.89 +0.0 846,216 - CCNA_00783 0.89 +0.8 846,242 - +0.1 846,277 + +2.2 846,293 - +0.3 846,340 + +0.2 846,348 + +0.5 846,351 - -0.1 846,399 + -0.9 846,399 + +3.0 846,406 - +1.2 846,406 - +0.1 846,419 + +0.7 846,419 + -0.6 846,419 + +0.0 846,427 - +2.9 846,443 + -0.2 846,443 + +0.1 846,443 + +1.0 846,451 - +1.5 846,451 - -0.2 846,461 - +2.5 846,509 + +0.1 846,509 + +0.0 846,517 - +1.0 846,517 - +1.4 846,524 + +2.5 846,525 + -0.3 846,525 + +0.2 846,532 - +1.7 846,532 - -0.5 846,533 - -0.6 846,533 - -1.5 846,578 + +0.5 846,616 + -0.6 846,616 + +2.0 846,649 - +0.4 846,722 + +1.4 846,744 + -1.0 846,754 + +0.1 846,805 - CCNA_00784 0.10 +4.8 846,806 - CCNA_00784 0.10 +4.4 846,814 - CCNA_00784 0.11 +0.0 846,828 - CCNA_00784 0.12 -0.2 846,837 - CCNA_00784 0.13 +1.2 846,842 + CCNA_00784 0.13 +0.5 846,857 + CCNA_00784 0.14 +0.5 846,865 - CCNA_00784 0.15 +1.5 846,908 + CCNA_00784 0.19 +0.6 846,916 - +3.0 846,918 + CCNA_00784 0.19 +3.0 846,963 + CCNA_00784 0.23 -0.4 846,963 + CCNA_00784 0.23 -1.0 846,963 + CCNA_00784 0.23 +1.1 846,963 + CCNA_00784 0.23 +1.8 846,963 + CCNA_00784 0.23 +0.5 846,963 + CCNA_00784 0.23 +0.5 846,963 + CCNA_00784 0.23 +0.2 846,963 + CCNA_00784 0.23 +0.7 846,966 - CCNA_00784 0.23 +0.2 846,966 - CCNA_00784 0.23 -0.9 846,971 - CCNA_00784 0.24 +0.2 846,971 - CCNA_00784 0.24 +1.7 846,971 - CCNA_00784 0.24 +0.7 846,971 - CCNA_00784 0.24 +0.5 847,032 - CCNA_00784 0.29 -0.9 847,032 - CCNA_00784 0.29 +1.0 847,041 - CCNA_00784 0.29 +0.8 847,050 + CCNA_00784 0.30 +1.0 847,052 + CCNA_00784 0.30 +0.5 847,060 - CCNA_00784 0.31 +0.7 847,066 - CCNA_00784 0.31 +0.2 847,066 - CCNA_00784 0.31 -0.8 847,068 - CCNA_00784 0.32 +0.5 847,095 + CCNA_00784 0.34 +0.4 847,137 + CCNA_00784 0.37 +0.5 847,149 + CCNA_00784 0.38 +0.8 847,154 + CCNA_00784 0.39 -0.6 847,154 + CCNA_00784 0.39 +1.7 847,160 + CCNA_00784 0.39 +1.5 847,161 + CCNA_00784 0.39 +2.0 847,161 + CCNA_00784 0.39 +0.1 847,169 - CCNA_00784 0.40 -0.6 847,180 - CCNA_00784 0.41 -0.9 847,230 + CCNA_00784 0.45 +1.9 847,230 + CCNA_00784 0.45 +2.2 847,230 + CCNA_00784 0.45 -1.2 847,230 + CCNA_00784 0.45 +1.7 847,235 + CCNA_00784 0.45 +1.6 847,243 - CCNA_00784 0.46 -1.5 847,253 - CCNA_00784 0.47 +3.5 847,253 - CCNA_00784 0.47 +1.4 847,259 + CCNA_00784 0.47 +0.5 847,266 + CCNA_00784 0.48 +0.7 847,314 - CCNA_00784 0.52 -1.4 847,321 + CCNA_00784 0.52 -0.2 847,321 + CCNA_00784 0.52 -1.1 847,329 - CCNA_00784 0.53 +0.4 847,329 - CCNA_00784 0.53 +2.4 847,372 - CCNA_00784 0.56 +1.2 847,372 - CCNA_00784 0.56 -1.0 847,426 + CCNA_00784 0.61 -0.3 847,426 + CCNA_00784 0.61 +1.5 847,426 + CCNA_00784 0.61 +0.7 847,428 - CCNA_00784 0.61 +2.2 847,434 - CCNA_00784 0.62 +1.7 847,434 - CCNA_00784 0.62 +1.0 847,434 - +3.5 847,434 - CCNA_00784 0.62 +1.0 847,525 + CCNA_00784 0.69 +0.9 847,561 + CCNA_00784 0.72 +0.3 847,561 + CCNA_00784 0.72 -0.1 847,561 + CCNA_00784 0.72 +1.3 847,561 + CCNA_00784 0.72 -0.2 847,561 + CCNA_00784 0.72 +1.2 847,562 - CCNA_00784 0.72 -0.3 847,562 - CCNA_00784 0.72 -0.3 847,569 - CCNA_00784 0.73 -0.9 847,604 + CCNA_00784 0.75 +2.0 847,628 + CCNA_00784 0.77 -0.9 847,655 + CCNA_00784 0.80 +0.8 847,676 - CCNA_00784 0.81 -1.0 847,678 + CCNA_00784 0.81 +0.4 847,697 + CCNA_00784 0.83 +1.1 847,741 - CCNA_00784 0.87 +2.5 847,768 - CCNA_00784 0.89 +1.8 847,780 - CCNA_00784 0.90 +0.7 847,780 - CCNA_00784 0.90 +0.5 847,782 + -0.1 847,782 + +1.0 847,790 - +0.8 847,790 - +2.4 847,790 - -0.2 847,818 + -0.6 847,818 + +1.5 847,852 + -0.2 847,871 - +0.9 847,871 - -0.5 847,887 - +0.5 847,891 - -0.4 847,909 + -0.8 847,965 + +1.4 847,970 + -0.1 847,978 - +0.2 847,978 - +0.2 847,978 - +1.5 847,978 - -0.3 847,985 - +0.1 848,035 + +0.7 848,035 + -0.2 848,035 + -1.2 848,043 - -0.9 848,043 - +0.6 848,043 - +0.5 848,051 - +2.5 848,055 + +1.2 848,092 + +0.4 848,092 + -1.6 848,100 - +2.0 848,116 - +3.3 848,180 - +1.0 848,180 - +1.4 848,182 - -0.1 848,215 - +1.0 848,215 - +0.4 848,285 + +1.2 848,285 + -0.0 848,293 - -0.6 848,411 + CCNA_00785 0.14 -0.9 848,423 + CCNA_00785 0.15 +2.0 848,434 + CCNA_00785 0.16 +0.5 848,434 + CCNA_00785 0.16 +0.6 848,434 + CCNA_00785 0.16 -0.4 848,434 + CCNA_00785 0.16 -0.1 848,434 + CCNA_00785 0.16 +1.2 848,434 + CCNA_00785 0.16 -0.3 848,434 + CCNA_00785 0.16 +1.2 848,434 + CCNA_00785 0.16 +0.2 848,434 + CCNA_00785 0.16 -1.6 848,434 + CCNA_00785 0.16 -0.9 848,434 + CCNA_00785 0.16 +0.5 848,442 - CCNA_00785 0.16 -0.6 848,442 - CCNA_00785 0.16 -0.4 848,442 - CCNA_00785 0.16 +0.2 848,442 - CCNA_00785 0.16 +0.8 848,442 - CCNA_00785 0.16 -1.4 848,442 - CCNA_00785 0.16 +0.0 848,442 - CCNA_00785 0.16 +2.8 848,442 - CCNA_00785 0.16 +0.1 848,442 - CCNA_00785 0.16 +1.0 848,442 - CCNA_00785 0.16 -1.0 848,442 - CCNA_00785 0.16 -0.9 848,454 + CCNA_00785 0.17 -1.1 848,462 - CCNA_00785 0.17 +2.0 848,489 + CCNA_00785 0.19 -0.7 848,492 - CCNA_00785 0.19 -0.8 848,510 - CCNA_00785 0.20 +1.1 848,600 + CCNA_00785 0.25 +0.2 848,600 + CCNA_00785 0.25 +0.4 848,603 - CCNA_00785 0.25 -0.7 848,633 + CCNA_00785 0.27 +2.0 848,696 - CCNA_00785 0.30 +2.2 848,815 + CCNA_00785 0.37 -0.5 848,830 + CCNA_00785 0.38 +0.8 848,833 - CCNA_00785 0.38 +0.3 848,841 + CCNA_00785 0.39 -0.3 848,841 + CCNA_00785 0.39 -0.5 848,867 - CCNA_00785 0.40 +0.5 848,875 + CCNA_00785 0.40 +0.5
Or see this region's nucleotide sequence