Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00759 and CCNA_00760 are separated by 134 nucleotides CCNA_00760 and CCNA_00761 are separated by 144 nucleotides CCNA_00761 and CCNA_00762 overlap by 4 nucleotides CCNA_00762 and CCNA_00763 are separated by 4 nucleotides
CCNA_00759: CCNA_00759 - TonB-dependent receptor, at 816,201 to 818,675
_00759
CCNA_00760: CCNA_00760 - two component sensor histidine kinase, at 818,810 to 820,510
_00760
CCNA_00761: CCNA_00761 - hypothetical protein, at 820,655 to 820,864
_00761
CCNA_00762: CCNA_00762 - hypothetical protein, at 820,861 to 821,205
_00762
CCNA_00763: CCNA_00763 - electron transfer flavoprotein alpha subunit, at 821,210 to 822,151
_00763
Position (kb) 818
819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 817.820 kb on - strand, within CCNA_00759 at 817.824 kb on + strand, within CCNA_00759 at 817.873 kb on + strand, within CCNA_00759 at 817.923 kb on + strand, within CCNA_00759 at 817.935 kb on + strand, within CCNA_00759 at 817.955 kb on + strand, within CCNA_00759 at 817.955 kb on + strand, within CCNA_00759 at 817.955 kb on + strand, within CCNA_00759 at 817.955 kb on + strand, within CCNA_00759 at 817.955 kb on + strand, within CCNA_00759 at 817.956 kb on + strand, within CCNA_00759 at 817.962 kb on - strand, within CCNA_00759 at 817.963 kb on - strand, within CCNA_00759 at 817.975 kb on - strand, within CCNA_00759 at 818.080 kb on + strand, within CCNA_00759 at 818.090 kb on + strand, within CCNA_00759 at 818.100 kb on + strand, within CCNA_00759 at 818.111 kb on + strand, within CCNA_00759 at 818.119 kb on - strand, within CCNA_00759 at 818.119 kb on - strand, within CCNA_00759 at 818.123 kb on + strand, within CCNA_00759 at 818.209 kb on + strand, within CCNA_00759 at 818.235 kb on + strand, within CCNA_00759 at 818.260 kb on + strand, within CCNA_00759 at 818.261 kb on - strand, within CCNA_00759 at 818.281 kb on + strand, within CCNA_00759 at 818.288 kb on - strand, within CCNA_00759 at 818.318 kb on - strand, within CCNA_00759 at 818.322 kb on + strand, within CCNA_00759 at 818.382 kb on - strand, within CCNA_00759 at 818.426 kb on - strand, within CCNA_00759 at 818.436 kb on - strand at 818.535 kb on + strand at 818.538 kb on - strand at 818.545 kb on + strand at 818.545 kb on + strand at 818.599 kb on + strand at 818.621 kb on + strand at 818.621 kb on - strand at 818.642 kb on - strand at 818.650 kb on + strand at 818.677 kb on + strand at 818.682 kb on + strand at 818.682 kb on + strand at 818.727 kb on - strand at 818.727 kb on - strand at 818.737 kb on - strand at 818.759 kb on - strand at 818.776 kb on + strand at 818.776 kb on + strand at 818.828 kb on + strand at 818.835 kb on + strand at 818.843 kb on - strand at 818.958 kb on - strand at 818.960 kb on + strand at 818.977 kb on + strand at 818.985 kb on - strand, within CCNA_00760 at 818.985 kb on - strand, within CCNA_00760 at 819.031 kb on - strand, within CCNA_00760 at 819.041 kb on - strand, within CCNA_00760 at 819.058 kb on + strand, within CCNA_00760 at 819.058 kb on + strand, within CCNA_00760 at 819.081 kb on - strand, within CCNA_00760 at 819.123 kb on - strand, within CCNA_00760 at 819.150 kb on - strand, within CCNA_00760 at 819.166 kb on + strand, within CCNA_00760 at 819.191 kb on - strand, within CCNA_00760 at 819.241 kb on - strand, within CCNA_00760 at 819.252 kb on + strand, within CCNA_00760 at 819.257 kb on + strand, within CCNA_00760 at 819.259 kb on - strand, within CCNA_00760 at 819.260 kb on - strand, within CCNA_00760 at 819.278 kb on - strand, within CCNA_00760 at 819.294 kb on + strand, within CCNA_00760 at 819.302 kb on - strand, within CCNA_00760 at 819.302 kb on - strand, within CCNA_00760 at 819.324 kb on - strand, within CCNA_00760 at 819.324 kb on - strand, within CCNA_00760 at 819.328 kb on + strand, within CCNA_00760 at 819.328 kb on + strand at 819.328 kb on + strand, within CCNA_00760 at 819.336 kb on - strand, within CCNA_00760 at 819.362 kb on + strand, within CCNA_00760 at 819.376 kb on + strand, within CCNA_00760 at 819.392 kb on + strand, within CCNA_00760 at 819.406 kb on - strand, within CCNA_00760 at 819.416 kb on - strand, within CCNA_00760 at 819.419 kb on + strand, within CCNA_00760 at 819.419 kb on + strand, within CCNA_00760 at 819.419 kb on + strand, within CCNA_00760 at 819.419 kb on + strand, within CCNA_00760 at 819.419 kb on + strand, within CCNA_00760 at 819.508 kb on - strand, within CCNA_00760 at 819.508 kb on - strand, within CCNA_00760 at 819.644 kb on + strand, within CCNA_00760 at 819.646 kb on - strand, within CCNA_00760 at 819.649 kb on + strand, within CCNA_00760 at 819.652 kb on - strand, within CCNA_00760 at 819.665 kb on - strand, within CCNA_00760 at 819.666 kb on + strand, within CCNA_00760 at 819.688 kb on + strand, within CCNA_00760 at 819.696 kb on - strand, within CCNA_00760 at 819.699 kb on - strand, within CCNA_00760 at 819.703 kb on - strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.766 kb on - strand, within CCNA_00760 at 819.781 kb on - strand, within CCNA_00760 at 819.797 kb on - strand, within CCNA_00760 at 819.822 kb on - strand, within CCNA_00760 at 819.829 kb on + strand, within CCNA_00760 at 819.860 kb on + strand, within CCNA_00760 at 819.860 kb on + strand, within CCNA_00760 at 819.868 kb on - strand, within CCNA_00760 at 819.877 kb on + strand, within CCNA_00760 at 819.877 kb on + strand, within CCNA_00760 at 819.877 kb on + strand, within CCNA_00760 at 819.924 kb on + strand, within CCNA_00760 at 819.930 kb on + strand, within CCNA_00760 at 819.930 kb on + strand, within CCNA_00760 at 819.946 kb on + strand, within CCNA_00760 at 819.954 kb on + strand, within CCNA_00760 at 819.954 kb on - strand, within CCNA_00760 at 819.967 kb on - strand, within CCNA_00760 at 819.982 kb on - strand, within CCNA_00760 at 819.982 kb on - strand, within CCNA_00760 at 819.982 kb on - strand, within CCNA_00760 at 819.982 kb on - strand, within CCNA_00760 at 819.984 kb on + strand, within CCNA_00760 at 819.992 kb on - strand, within CCNA_00760 at 819.992 kb on - strand, within CCNA_00760 at 820.009 kb on - strand, within CCNA_00760 at 820.027 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.153 kb on + strand, within CCNA_00760 at 820.192 kb on + strand, within CCNA_00760 at 820.200 kb on - strand, within CCNA_00760 at 820.200 kb on - strand, within CCNA_00760 at 820.250 kb on - strand, within CCNA_00760 at 820.252 kb on + strand, within CCNA_00760 at 820.267 kb on + strand, within CCNA_00760 at 820.333 kb on - strand, within CCNA_00760 at 820.349 kb on + strand at 820.349 kb on + strand at 820.349 kb on + strand at 820.357 kb on - strand at 820.362 kb on + strand at 820.362 kb on + strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.393 kb on + strand at 820.398 kb on + strand at 820.398 kb on + strand at 820.398 kb on + strand at 820.406 kb on - strand at 820.446 kb on - strand at 820.446 kb on - strand at 820.446 kb on - strand at 820.478 kb on + strand at 820.534 kb on + strand at 820.547 kb on + strand at 820.555 kb on - strand at 820.555 kb on - strand at 820.594 kb on - strand at 820.610 kb on + strand at 820.633 kb on - strand at 820.647 kb on + strand at 820.647 kb on + strand at 820.649 kb on - strand at 820.655 kb on - strand at 820.655 kb on - strand at 820.670 kb on - strand at 820.951 kb on - strand, within CCNA_00762 at 820.992 kb on + strand, within CCNA_00762 at 821.000 kb on - strand, within CCNA_00762 at 821.000 kb on - strand, within CCNA_00762 at 821.000 kb on - strand, within CCNA_00762 at 821.075 kb on + strand, within CCNA_00762 at 821.080 kb on + strand, within CCNA_00762 at 821.080 kb on + strand at 821.088 kb on - strand, within CCNA_00762 at 821.088 kb on - strand, within CCNA_00762 at 821.088 kb on - strand, within CCNA_00762 at 821.088 kb on - strand, within CCNA_00762 at 821.111 kb on + strand, within CCNA_00762 at 821.123 kb on + strand, within CCNA_00762 at 821.131 kb on - strand, within CCNA_00762 at 821.138 kb on + strand, within CCNA_00762 at 821.181 kb on - strand at 821.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 817,820 - CCNA_00759 0.65 +1.3 817,824 + CCNA_00759 0.66 +0.1 817,873 + CCNA_00759 0.68 +0.0 817,923 + CCNA_00759 0.70 -0.4 817,935 + CCNA_00759 0.70 +0.6 817,955 + CCNA_00759 0.71 +0.1 817,955 + CCNA_00759 0.71 -0.2 817,955 + CCNA_00759 0.71 +1.1 817,955 + CCNA_00759 0.71 -1.7 817,955 + CCNA_00759 0.71 +1.1 817,956 + CCNA_00759 0.71 -0.0 817,962 - CCNA_00759 0.71 -1.1 817,963 - CCNA_00759 0.71 -1.0 817,975 - CCNA_00759 0.72 +1.0 818,080 + CCNA_00759 0.76 +1.7 818,090 + CCNA_00759 0.76 +0.1 818,100 + CCNA_00759 0.77 -1.6 818,111 + CCNA_00759 0.77 -0.9 818,119 - CCNA_00759 0.77 -1.4 818,119 - CCNA_00759 0.77 -1.0 818,123 + CCNA_00759 0.78 +3.2 818,209 + CCNA_00759 0.81 +0.9 818,235 + CCNA_00759 0.82 +0.2 818,260 + CCNA_00759 0.83 +0.2 818,261 - CCNA_00759 0.83 -0.0 818,281 + CCNA_00759 0.84 +1.2 818,288 - CCNA_00759 0.84 +0.9 818,318 - CCNA_00759 0.86 +0.1 818,322 + CCNA_00759 0.86 +1.0 818,382 - CCNA_00759 0.88 +0.6 818,426 - CCNA_00759 0.90 +2.0 818,436 - -0.4 818,535 + -1.3 818,538 - +1.4 818,545 + +0.6 818,545 + -0.2 818,599 + +0.7 818,621 + -0.5 818,621 - +0.1 818,642 - -0.8 818,650 + -0.8 818,677 + -0.1 818,682 + -1.4 818,682 + -0.1 818,727 - +0.4 818,727 - +0.9 818,737 - -0.0 818,759 - +0.2 818,776 + +1.7 818,776 + +1.1 818,828 + -1.2 818,835 + -0.9 818,843 - +1.5 818,958 - -0.1 818,960 + +1.3 818,977 + -0.6 818,985 - CCNA_00760 0.10 +1.5 818,985 - CCNA_00760 0.10 +1.0 819,031 - CCNA_00760 0.13 -0.1 819,041 - CCNA_00760 0.14 +1.1 819,058 + CCNA_00760 0.15 +0.0 819,058 + CCNA_00760 0.15 +0.6 819,081 - CCNA_00760 0.16 +1.4 819,123 - CCNA_00760 0.18 +0.3 819,150 - CCNA_00760 0.20 +0.6 819,166 + CCNA_00760 0.21 +0.5 819,191 - CCNA_00760 0.22 +1.4 819,241 - CCNA_00760 0.25 +0.5 819,252 + CCNA_00760 0.26 -1.0 819,257 + CCNA_00760 0.26 +0.1 819,259 - CCNA_00760 0.26 +1.0 819,260 - CCNA_00760 0.26 +0.6 819,278 - CCNA_00760 0.28 +1.2 819,294 + CCNA_00760 0.28 -1.0 819,302 - CCNA_00760 0.29 +0.1 819,302 - CCNA_00760 0.29 +0.2 819,324 - CCNA_00760 0.30 +1.4 819,324 - CCNA_00760 0.30 +2.7 819,328 + CCNA_00760 0.30 -0.7 819,328 + +2.6 819,328 + CCNA_00760 0.30 +0.5 819,336 - CCNA_00760 0.31 +2.0 819,362 + CCNA_00760 0.32 +3.0 819,376 + CCNA_00760 0.33 +1.0 819,392 + CCNA_00760 0.34 -0.5 819,406 - CCNA_00760 0.35 +0.6 819,416 - CCNA_00760 0.36 +1.7 819,419 + CCNA_00760 0.36 +1.2 819,419 + CCNA_00760 0.36 +2.0 819,419 + CCNA_00760 0.36 +0.4 819,419 + CCNA_00760 0.36 +0.0 819,419 + CCNA_00760 0.36 +2.1 819,508 - CCNA_00760 0.41 +1.3 819,508 - CCNA_00760 0.41 +0.5 819,644 + CCNA_00760 0.49 -0.7 819,646 - CCNA_00760 0.49 +1.6 819,649 + CCNA_00760 0.49 -0.3 819,652 - CCNA_00760 0.50 -0.2 819,665 - CCNA_00760 0.50 +1.4 819,666 + CCNA_00760 0.50 -0.0 819,688 + CCNA_00760 0.52 -0.3 819,696 - CCNA_00760 0.52 +0.1 819,699 - CCNA_00760 0.52 -0.7 819,703 - CCNA_00760 0.52 +0.6 819,747 + CCNA_00760 0.55 +1.2 819,747 + CCNA_00760 0.55 +1.7 819,747 + CCNA_00760 0.55 -1.6 819,747 + CCNA_00760 0.55 +0.5 819,747 + CCNA_00760 0.55 +0.2 819,747 + CCNA_00760 0.55 -0.1 819,755 - CCNA_00760 0.56 +1.8 819,755 - CCNA_00760 0.56 -1.0 819,755 - CCNA_00760 0.56 +1.3 819,755 - CCNA_00760 0.56 +0.4 819,755 - CCNA_00760 0.56 -0.9 819,755 - CCNA_00760 0.56 -0.4 819,758 + CCNA_00760 0.56 -1.8 819,758 + CCNA_00760 0.56 +0.6 819,758 + CCNA_00760 0.56 +2.1 819,758 + CCNA_00760 0.56 +0.2 819,766 - CCNA_00760 0.56 -1.5 819,781 - CCNA_00760 0.57 +1.5 819,797 - CCNA_00760 0.58 +3.4 819,822 - CCNA_00760 0.59 +0.3 819,829 + CCNA_00760 0.60 -1.1 819,860 + CCNA_00760 0.62 +1.4 819,860 + CCNA_00760 0.62 -0.8 819,868 - CCNA_00760 0.62 +0.7 819,877 + CCNA_00760 0.63 -0.8 819,877 + CCNA_00760 0.63 +0.3 819,877 + CCNA_00760 0.63 -0.8 819,924 + CCNA_00760 0.65 +0.9 819,930 + CCNA_00760 0.66 +1.7 819,930 + CCNA_00760 0.66 +0.5 819,946 + CCNA_00760 0.67 +0.0 819,954 + CCNA_00760 0.67 +0.6 819,954 - CCNA_00760 0.67 +1.2 819,967 - CCNA_00760 0.68 +1.2 819,982 - CCNA_00760 0.69 -0.1 819,982 - CCNA_00760 0.69 +0.9 819,982 - CCNA_00760 0.69 -1.2 819,982 - CCNA_00760 0.69 +1.4 819,984 + CCNA_00760 0.69 -0.2 819,992 - CCNA_00760 0.69 +0.9 819,992 - CCNA_00760 0.69 -0.8 820,009 - CCNA_00760 0.70 +0.2 820,027 + CCNA_00760 0.72 -0.8 820,119 + CCNA_00760 0.77 +0.2 820,119 + CCNA_00760 0.77 +1.7 820,119 + CCNA_00760 0.77 +1.9 820,119 + CCNA_00760 0.77 +0.2 820,119 + CCNA_00760 0.77 +0.4 820,119 + CCNA_00760 0.77 +0.3 820,119 + CCNA_00760 0.77 -0.1 820,119 + CCNA_00760 0.77 +1.0 820,127 - CCNA_00760 0.77 +0.3 820,127 - CCNA_00760 0.77 +1.0 820,127 - CCNA_00760 0.77 +0.7 820,127 - CCNA_00760 0.77 +3.2 820,127 - CCNA_00760 0.77 +0.6 820,153 + CCNA_00760 0.79 +0.8 820,192 + CCNA_00760 0.81 -0.8 820,200 - CCNA_00760 0.82 -0.4 820,200 - CCNA_00760 0.82 +2.7 820,250 - CCNA_00760 0.85 +0.2 820,252 + CCNA_00760 0.85 -1.3 820,267 + CCNA_00760 0.86 -0.1 820,333 - CCNA_00760 0.90 +0.7 820,349 + +0.5 820,349 + -0.1 820,349 + -0.4 820,357 - +1.5 820,362 + +1.5 820,362 + -0.6 820,370 - +2.7 820,370 - +1.1 820,370 - +1.0 820,370 - +0.6 820,370 - +0.7 820,370 - -0.5 820,393 + +0.4 820,398 + -1.2 820,398 + +0.5 820,398 + +0.8 820,406 - +2.7 820,446 - +1.7 820,446 - -1.8 820,446 - +0.2 820,478 + +1.4 820,534 + +0.3 820,547 + -1.5 820,555 - +1.7 820,555 - +1.8 820,594 - +0.3 820,610 + -0.3 820,633 - +1.5 820,647 + -0.3 820,647 + -2.4 820,649 - +0.0 820,655 - +1.5 820,655 - +0.6 820,670 - +0.1 820,951 - CCNA_00762 0.26 +2.5 820,992 + CCNA_00762 0.38 +0.3 821,000 - CCNA_00762 0.40 +0.1 821,000 - CCNA_00762 0.40 -0.3 821,000 - CCNA_00762 0.40 +0.5 821,075 + CCNA_00762 0.62 +1.0 821,080 + CCNA_00762 0.63 +1.1 821,080 + +1.7 821,088 - CCNA_00762 0.66 +2.2 821,088 - CCNA_00762 0.66 +2.6 821,088 - CCNA_00762 0.66 +2.0 821,088 - CCNA_00762 0.66 +1.7 821,111 + CCNA_00762 0.72 +0.3 821,123 + CCNA_00762 0.76 +1.5 821,131 - CCNA_00762 0.78 +0.9 821,138 + CCNA_00762 0.80 +0.8 821,181 - +2.5 821,192 + +0.1
Or see this region's nucleotide sequence