Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00753 and CCNA_00754 are separated by 157 nucleotides CCNA_00754 and CCNA_00755 are separated by 147 nucleotides CCNA_00755 and CCNA_00756 overlap by 43 nucleotides CCNA_00756 and CCNA_00757 are separated by 135 nucleotides
CCNA_00753: CCNA_00753 - lysine 2,3-aminomutase, at 811,400 to 812,437
_00753
CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296
_00754
CCNA_00755: CCNA_00755 - tellurium resistance protein terB, at 813,444 to 813,884
_00755
CCNA_00756: CCNA_00756 - hypothetical protein, at 813,842 to 814,120
_00756
CCNA_00757: CCNA_00757 - lysyl-tRNA synthetase, at 814,256 to 815,314
_00757
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 811.637 kb on - strand, within CCNA_00753 at 811.638 kb on + strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.670 kb on - strand, within CCNA_00753 at 811.694 kb on + strand, within CCNA_00753 at 811.696 kb on + strand, within CCNA_00753 at 811.702 kb on - strand, within CCNA_00753 at 811.709 kb on + strand, within CCNA_00753 at 811.725 kb on - strand, within CCNA_00753 at 811.727 kb on - strand, within CCNA_00753 at 811.746 kb on + strand, within CCNA_00753 at 811.776 kb on + strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 812.002 kb on + strand, within CCNA_00753 at 812.004 kb on + strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.036 kb on - strand, within CCNA_00753 at 812.041 kb on - strand, within CCNA_00753 at 812.051 kb on - strand, within CCNA_00753 at 812.065 kb on + strand, within CCNA_00753 at 812.082 kb on + strand, within CCNA_00753 at 812.085 kb on - strand, within CCNA_00753 at 812.114 kb on + strand, within CCNA_00753 at 812.122 kb on - strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.137 kb on - strand, within CCNA_00753 at 812.147 kb on - strand, within CCNA_00753 at 812.160 kb on + strand, within CCNA_00753 at 812.165 kb on + strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.173 kb on - strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.192 kb on - strand, within CCNA_00753 at 812.197 kb on - strand, within CCNA_00753 at 812.234 kb on + strand, within CCNA_00753 at 812.243 kb on - strand, within CCNA_00753 at 812.295 kb on + strand, within CCNA_00753 at 812.313 kb on - strand, within CCNA_00753 at 812.361 kb on - strand at 812.371 kb on + strand at 812.388 kb on - strand at 812.397 kb on + strand at 812.405 kb on - strand at 812.419 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.429 kb on + strand at 812.435 kb on + strand at 812.441 kb on + strand at 812.443 kb on - strand at 812.508 kb on - strand at 812.593 kb on + strand at 812.603 kb on - strand at 812.603 kb on - strand at 812.605 kb on + strand at 812.613 kb on - strand at 812.638 kb on + strand at 812.643 kb on + strand at 812.643 kb on + strand at 812.651 kb on - strand at 812.653 kb on + strand at 812.653 kb on + strand at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.732 kb on + strand, within CCNA_00754 at 812.736 kb on + strand, within CCNA_00754 at 812.736 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.776 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.869 kb on - strand, within CCNA_00754 at 812.871 kb on - strand, within CCNA_00754 at 812.923 kb on + strand, within CCNA_00754 at 812.942 kb on + strand, within CCNA_00754 at 813.034 kb on - strand, within CCNA_00754 at 813.055 kb on - strand, within CCNA_00754 at 813.100 kb on - strand, within CCNA_00754 at 813.126 kb on + strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.157 kb on + strand, within CCNA_00754 at 813.178 kb on + strand, within CCNA_00754 at 813.222 kb on + strand, within CCNA_00754 at 813.281 kb on + strand at 813.291 kb on + strand at 813.291 kb on + strand at 813.300 kb on - strand at 813.313 kb on - strand at 813.317 kb on - strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.328 kb on - strand at 813.333 kb on - strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.366 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.386 kb on + strand at 813.427 kb on + strand at 813.442 kb on + strand at 813.450 kb on - strand at 813.450 kb on - strand at 813.452 kb on + strand at 813.464 kb on + strand at 813.470 kb on + strand at 813.484 kb on - strand at 813.497 kb on - strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.557 kb on - strand, within CCNA_00755 at 813.562 kb on + strand, within CCNA_00755 at 813.562 kb on - strand, within CCNA_00755 at 813.569 kb on + strand, within CCNA_00755 at 813.602 kb on + strand, within CCNA_00755 at 813.610 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.626 kb on - strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.691 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.710 kb on - strand, within CCNA_00755 at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.879 kb on + strand at 813.884 kb on + strand at 813.913 kb on + strand, within CCNA_00756 at 813.916 kb on - strand, within CCNA_00756 at 814.011 kb on - strand, within CCNA_00756 at 814.013 kb on + strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.074 kb on + strand, within CCNA_00756 at 814.126 kb on - strand at 814.146 kb on + strand at 814.148 kb on - strand at 814.164 kb on + strand at 814.164 kb on + strand at 814.172 kb on - strand at 814.172 kb on - strand at 814.181 kb on - strand at 814.212 kb on + strand at 814.253 kb on + strand at 814.259 kb on - strand at 814.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 811,637 - CCNA_00753 0.23 -0.2 811,638 + CCNA_00753 0.23 -1.3 811,646 - CCNA_00753 0.24 +2.6 811,646 - CCNA_00753 0.24 +2.0 811,646 - CCNA_00753 0.24 -1.2 811,646 - CCNA_00753 0.24 +0.6 811,670 - CCNA_00753 0.26 +0.7 811,694 + CCNA_00753 0.28 -0.4 811,696 + CCNA_00753 0.29 +3.9 811,702 - CCNA_00753 0.29 +1.6 811,709 + CCNA_00753 0.30 +2.0 811,725 - CCNA_00753 0.31 -0.0 811,727 - CCNA_00753 0.32 -0.6 811,746 + CCNA_00753 0.33 -0.8 811,776 + CCNA_00753 0.36 +0.6 811,818 - CCNA_00753 0.40 +0.6 811,818 - CCNA_00753 0.40 +1.6 811,911 + CCNA_00753 0.49 -1.3 811,911 + CCNA_00753 0.49 -0.1 811,911 + CCNA_00753 0.49 -0.3 811,911 + CCNA_00753 0.49 +1.1 811,911 + CCNA_00753 0.49 +0.9 811,911 + CCNA_00753 0.49 +0.6 811,919 - CCNA_00753 0.50 -0.6 811,919 - CCNA_00753 0.50 +1.6 811,919 - CCNA_00753 0.50 +2.1 811,919 - CCNA_00753 0.50 +1.0 812,002 + CCNA_00753 0.58 +2.6 812,004 + CCNA_00753 0.58 +0.4 812,010 - CCNA_00753 0.59 +0.5 812,010 - CCNA_00753 0.59 -0.5 812,010 - CCNA_00753 0.59 +1.4 812,033 + CCNA_00753 0.61 -0.5 812,033 + CCNA_00753 0.61 -0.0 812,033 + CCNA_00753 0.61 +0.6 812,036 - CCNA_00753 0.61 -1.1 812,041 - CCNA_00753 0.62 +0.4 812,051 - CCNA_00753 0.63 -1.0 812,065 + CCNA_00753 0.64 -1.4 812,082 + CCNA_00753 0.66 -0.9 812,085 - CCNA_00753 0.66 -0.1 812,114 + CCNA_00753 0.69 +2.2 812,122 - CCNA_00753 0.70 +0.9 812,129 + CCNA_00753 0.70 +1.0 812,129 + CCNA_00753 0.70 -0.4 812,129 + CCNA_00753 0.70 -1.1 812,129 + CCNA_00753 0.70 +0.5 812,132 - CCNA_00753 0.71 +0.6 812,132 - CCNA_00753 0.71 +0.5 812,137 - CCNA_00753 0.71 +0.2 812,147 - CCNA_00753 0.72 +0.6 812,160 + CCNA_00753 0.73 +0.5 812,165 + CCNA_00753 0.74 -0.1 812,168 - CCNA_00753 0.74 -1.8 812,168 - CCNA_00753 0.74 +0.5 812,168 - CCNA_00753 0.74 +1.2 812,173 - CCNA_00753 0.74 -0.0 812,182 + CCNA_00753 0.75 -1.5 812,182 + CCNA_00753 0.75 -1.2 812,190 - CCNA_00753 0.76 -0.6 812,190 - CCNA_00753 0.76 -0.3 812,192 - CCNA_00753 0.76 +0.1 812,197 - CCNA_00753 0.77 -0.1 812,234 + CCNA_00753 0.80 +0.3 812,243 - CCNA_00753 0.81 +0.6 812,295 + CCNA_00753 0.86 +0.1 812,313 - CCNA_00753 0.88 -0.6 812,361 - +2.0 812,371 + +1.4 812,388 - +0.6 812,397 + -1.3 812,405 - +0.7 812,419 + +1.6 812,420 + -1.1 812,420 + -0.0 812,420 + +3.2 812,428 - +0.3 812,428 - -0.2 812,428 - +0.3 812,428 - -0.6 812,428 - +0.5 812,428 - +0.1 812,429 + +5.6 812,435 + -0.6 812,441 + +1.4 812,443 - +1.5 812,508 - -1.5 812,593 + +2.2 812,603 - +1.4 812,603 - +1.4 812,605 + +1.4 812,613 - +1.1 812,638 + -0.7 812,643 + +0.2 812,643 + -0.7 812,651 - +1.5 812,653 + +0.0 812,653 + -0.7 812,721 - CCNA_00754 0.18 +0.4 812,721 - CCNA_00754 0.18 +0.7 812,721 - CCNA_00754 0.18 +0.8 812,726 - CCNA_00754 0.19 +0.7 812,726 - CCNA_00754 0.19 +0.4 812,726 - CCNA_00754 0.19 +2.6 812,726 - CCNA_00754 0.19 +1.3 812,732 + CCNA_00754 0.20 -0.3 812,736 + CCNA_00754 0.20 +1.1 812,736 - CCNA_00754 0.20 +1.5 812,743 - CCNA_00754 0.21 +1.6 812,743 - CCNA_00754 0.21 +0.4 812,744 - CCNA_00754 0.21 +2.1 812,744 - CCNA_00754 0.21 +0.7 812,776 + CCNA_00754 0.26 +3.0 812,838 + CCNA_00754 0.35 +0.8 812,838 + CCNA_00754 0.35 +3.0 812,838 + CCNA_00754 0.35 +2.0 812,838 + CCNA_00754 0.35 +1.5 812,846 - CCNA_00754 0.36 -0.3 812,846 - CCNA_00754 0.36 +0.3 812,846 - CCNA_00754 0.36 +0.7 812,846 - CCNA_00754 0.36 +1.4 812,846 - CCNA_00754 0.36 +2.6 812,846 - CCNA_00754 0.36 +0.5 812,869 - CCNA_00754 0.39 -2.3 812,871 - CCNA_00754 0.39 +0.7 812,923 + CCNA_00754 0.47 +3.2 812,942 + CCNA_00754 0.49 +2.2 813,034 - CCNA_00754 0.63 +1.1 813,055 - CCNA_00754 0.66 +0.7 813,100 - CCNA_00754 0.72 -1.2 813,126 + CCNA_00754 0.76 -0.1 813,154 - CCNA_00754 0.80 +0.4 813,154 - CCNA_00754 0.80 +2.7 813,157 + CCNA_00754 0.80 -0.6 813,178 + CCNA_00754 0.83 +1.8 813,222 + CCNA_00754 0.89 -0.1 813,281 + +1.8 813,291 + -0.3 813,291 + -0.6 813,300 - +2.2 813,313 - -1.3 813,317 - +0.9 813,320 + +0.4 813,320 + -1.1 813,320 + +0.4 813,328 - +1.7 813,333 - -1.5 813,344 + +0.3 813,344 + +1.6 813,344 + -0.3 813,344 + +0.6 813,344 + +2.2 813,344 + +1.5 813,344 + +0.7 813,344 + -0.0 813,344 + +0.9 813,344 + +1.2 813,344 + +0.7 813,344 + +0.6 813,352 - +1.2 813,352 - +1.7 813,352 - +0.3 813,352 - -0.7 813,352 - +2.9 813,352 - +0.9 813,352 - +0.4 813,352 - +1.2 813,366 + +1.3 813,373 + +3.4 813,373 + -0.3 813,373 + +0.5 813,373 + +0.5 813,373 + +1.4 813,373 + +0.2 813,373 + -0.0 813,373 + +0.2 813,373 + +0.8 813,373 + +0.8 813,373 + -0.5 813,373 + +1.0 813,373 + +0.3 813,373 + -1.3 813,373 + -0.0 813,373 + -0.4 813,373 + +0.6 813,381 - +1.7 813,381 - +0.5 813,381 - -0.7 813,381 - -0.4 813,381 - +1.1 813,381 - -0.0 813,381 - -1.0 813,381 - -0.1 813,381 - -0.1 813,381 - -0.9 813,381 - +2.6 813,381 - -1.0 813,381 - +0.3 813,381 - -0.1 813,386 + -1.0 813,427 + -0.3 813,442 + +1.6 813,450 - +2.4 813,450 - +0.7 813,452 + +0.7 813,464 + -0.8 813,470 + +0.9 813,484 - +0.9 813,497 - CCNA_00755 0.12 -1.5 813,549 + CCNA_00755 0.24 -0.3 813,549 + CCNA_00755 0.24 +0.1 813,557 - CCNA_00755 0.26 +0.8 813,562 + CCNA_00755 0.27 -0.8 813,562 - CCNA_00755 0.27 +0.6 813,569 + CCNA_00755 0.28 +0.2 813,602 + CCNA_00755 0.36 -0.5 813,610 - CCNA_00755 0.38 -0.1 813,621 - CCNA_00755 0.40 -1.0 813,621 - CCNA_00755 0.40 +0.5 813,621 - CCNA_00755 0.40 -0.4 813,621 - CCNA_00755 0.40 +0.5 813,626 - CCNA_00755 0.41 +0.7 813,678 + CCNA_00755 0.53 +0.9 813,678 + CCNA_00755 0.53 -1.6 813,686 - CCNA_00755 0.55 +0.9 813,686 - CCNA_00755 0.55 +1.4 813,686 - CCNA_00755 0.55 +0.6 813,691 + CCNA_00755 0.56 -1.0 813,693 + CCNA_00755 0.56 +6.1 813,693 + CCNA_00755 0.56 -0.2 813,710 - CCNA_00755 0.60 +1.2 813,866 - +0.7 813,866 - +0.5 813,866 - +1.4 813,866 - -0.2 813,879 + -0.6 813,884 + +0.2 813,913 + CCNA_00756 0.25 -0.0 813,916 - CCNA_00756 0.27 +0.5 814,011 - CCNA_00756 0.61 -0.7 814,013 + CCNA_00756 0.61 +0.5 814,044 - CCNA_00756 0.72 +5.0 814,044 - CCNA_00756 0.72 +5.2 814,044 - CCNA_00756 0.72 +4.7 814,044 - CCNA_00756 0.72 +5.1 814,074 + CCNA_00756 0.83 +0.7 814,126 - +4.2 814,146 + +2.5 814,148 - +3.2 814,164 + +0.2 814,164 + +1.0 814,172 - +4.2 814,172 - +4.3 814,181 - +3.9 814,212 + -1.1 814,253 + +1.2 814,259 - -0.1 814,259 - -0.3
Or see this region's nucleotide sequence