Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00742 and CCNA_00743 are separated by 146 nucleotides CCNA_00743 and CCNA_00744 are separated by 241 nucleotides CCNA_00744 and CCNA_00745 are separated by 33 nucleotides
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
CCNA_00743: CCNA_00743 - NnrU family membrane protein, at 800,944 to 801,510
_00743
CCNA_00744: CCNA_00744 - GIY-YIG endonuclease domain protein, at 801,752 to 802,036
_00744
CCNA_00745: CCNA_00745 - hypothetical protein, at 802,070 to 802,774
_00745
CCNA_03935: CCNA_03935 - hypothetical protein, at 802,082 to 802,519
_03935
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742 at 800.460 kb on - strand, within CCNA_00742 at 800.471 kb on - strand, within CCNA_00742 at 800.473 kb on - strand, within CCNA_00742 at 800.502 kb on + strand, within CCNA_00742 at 800.514 kb on + strand, within CCNA_00742 at 800.520 kb on + strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.568 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.629 kb on + strand, within CCNA_00742 at 800.655 kb on + strand, within CCNA_00742 at 800.660 kb on + strand, within CCNA_00742 at 800.663 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.693 kb on - strand, within CCNA_00742 at 800.702 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.743 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.858 kb on - strand at 800.863 kb on - strand at 800.863 kb on - strand at 800.963 kb on + strand at 800.973 kb on + strand at 800.973 kb on + strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.990 kb on - strand at 800.992 kb on + strand at 801.039 kb on + strand, within CCNA_00743 at 801.039 kb on + strand, within CCNA_00743 at 801.091 kb on - strand, within CCNA_00743 at 801.130 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.177 kb on - strand, within CCNA_00743 at 801.185 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.222 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.244 kb on - strand, within CCNA_00743 at 801.266 kb on + strand, within CCNA_00743 at 801.274 kb on - strand, within CCNA_00743 at 801.291 kb on + strand, within CCNA_00743 at 801.305 kb on - strand, within CCNA_00743 at 801.320 kb on - strand, within CCNA_00743 at 801.322 kb on - strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.342 kb on + strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.392 kb on + strand, within CCNA_00743 at 801.401 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.402 kb on + strand, within CCNA_00743 at 801.410 kb on - strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.418 kb on + strand, within CCNA_00743 at 801.435 kb on + strand, within CCNA_00743 at 801.438 kb on - strand, within CCNA_00743 at 801.443 kb on - strand, within CCNA_00743 at 801.469 kb on + strand at 801.483 kb on + strand at 801.506 kb on + strand at 801.556 kb on + strand at 801.564 kb on + strand at 801.564 kb on + strand at 801.572 kb on - strand at 801.572 kb on - strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.623 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.628 kb on - strand at 801.643 kb on + strand at 801.666 kb on + strand at 801.669 kb on - strand at 801.674 kb on - strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.777 kb on - strand at 801.797 kb on + strand, within CCNA_00744 at 801.801 kb on + strand, within CCNA_00744 at 801.801 kb on + strand, within CCNA_00744 at 801.809 kb on - strand, within CCNA_00744 at 801.812 kb on + strand, within CCNA_00744 at 801.842 kb on + strand, within CCNA_00744 at 801.842 kb on - strand, within CCNA_00744 at 801.862 kb on - strand, within CCNA_00744 at 801.867 kb on - strand, within CCNA_00744 at 801.892 kb on + strand, within CCNA_00744 at 801.892 kb on + strand, within CCNA_00744 at 801.892 kb on + strand, within CCNA_00744 at 801.939 kb on - strand, within CCNA_00744 at 801.945 kb on + strand, within CCNA_00744 at 801.965 kb on - strand, within CCNA_00744 at 801.989 kb on - strand, within CCNA_00744 at 801.989 kb on - strand, within CCNA_00744 at 802.047 kb on - strand at 802.054 kb on - strand at 802.061 kb on + strand at 802.061 kb on + strand at 802.061 kb on + strand at 802.061 kb on + strand at 802.064 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.069 kb on - strand at 802.070 kb on + strand at 802.080 kb on - strand at 802.093 kb on + strand at 802.101 kb on - strand at 802.132 kb on + strand at 802.140 kb on - strand at 802.184 kb on + strand at 802.192 kb on - strand at 802.192 kb on - strand at 802.199 kb on + strand at 802.207 kb on - strand at 802.214 kb on - strand at 802.269 kb on - strand at 802.302 kb on + strand at 802.310 kb on - strand at 802.330 kb on + strand at 802.370 kb on + strand at 802.393 kb on - strand at 802.399 kb on - strand at 802.400 kb on + strand at 802.415 kb on + strand at 802.423 kb on - strand at 802.423 kb on - strand at 802.423 kb on - strand at 802.438 kb on + strand at 802.446 kb on + strand at 802.494 kb on + strand at 802.502 kb on - strand at 802.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 799,946 - +1.9 799,979 - -2.0 799,985 + +1.4 799,985 - -1.0 799,993 - +2.0 800,054 + CCNA_00742 0.14 +1.0 800,097 + CCNA_00742 0.19 +0.2 800,193 + CCNA_00742 0.30 +0.4 800,198 + CCNA_00742 0.30 +1.7 800,211 - CCNA_00742 0.32 +0.1 800,211 - CCNA_00742 0.32 -0.1 800,261 - CCNA_00742 0.38 +0.1 800,302 - CCNA_00742 0.42 +1.4 800,317 - CCNA_00742 0.44 -0.5 800,330 - CCNA_00742 0.46 +2.0 800,332 - CCNA_00742 0.46 +1.6 800,352 + CCNA_00742 0.48 +0.9 800,360 - CCNA_00742 0.49 -1.1 800,394 + CCNA_00742 0.53 +0.1 800,402 - CCNA_00742 0.54 +0.2 800,417 - CCNA_00742 0.56 +0.2 800,425 - CCNA_00742 0.57 +0.2 800,438 - CCNA_00742 0.58 -1.7 800,460 - CCNA_00742 0.61 +0.3 800,471 - CCNA_00742 0.62 -0.2 800,473 - CCNA_00742 0.62 +0.5 800,502 + CCNA_00742 0.66 +0.7 800,514 + CCNA_00742 0.67 +0.3 800,520 + CCNA_00742 0.68 +0.3 800,528 - CCNA_00742 0.69 -1.3 800,555 + CCNA_00742 0.72 +1.0 800,555 + CCNA_00742 0.72 +1.4 800,568 - CCNA_00742 0.73 +0.7 800,600 - CCNA_00742 0.77 -0.0 800,600 - CCNA_00742 0.77 -1.5 800,600 - CCNA_00742 0.77 +0.1 800,629 + CCNA_00742 0.80 +0.4 800,655 + CCNA_00742 0.83 +2.7 800,660 + CCNA_00742 0.84 +1.2 800,663 - CCNA_00742 0.84 +0.2 800,668 - CCNA_00742 0.85 +0.9 800,693 - CCNA_00742 0.88 -0.3 800,702 + CCNA_00742 0.89 +2.2 800,735 - -0.9 800,743 + +2.0 800,855 + -0.4 800,855 + +1.7 800,858 - -1.5 800,863 - +0.2 800,863 - -1.3 800,963 + +1.6 800,973 + +0.4 800,973 + -1.1 800,981 - +1.0 800,981 - +1.2 800,981 - +0.0 800,990 - -1.3 800,992 + +1.7 801,039 + CCNA_00743 0.17 -0.1 801,039 + CCNA_00743 0.17 +0.7 801,091 - CCNA_00743 0.26 +1.1 801,130 + CCNA_00743 0.33 +1.7 801,135 + CCNA_00743 0.34 -0.1 801,135 + CCNA_00743 0.34 +1.1 801,177 - CCNA_00743 0.41 -0.4 801,185 + CCNA_00743 0.43 +3.6 801,199 + CCNA_00743 0.45 -0.2 801,199 + CCNA_00743 0.45 +0.0 801,199 + CCNA_00743 0.45 +1.6 801,207 - CCNA_00743 0.46 +0.8 801,207 - CCNA_00743 0.46 +0.6 801,222 + CCNA_00743 0.49 +1.4 801,231 + CCNA_00743 0.51 +0.4 801,231 + CCNA_00743 0.51 -1.0 801,231 + CCNA_00743 0.51 +0.0 801,231 + CCNA_00743 0.51 +1.1 801,231 + CCNA_00743 0.51 +0.4 801,239 - CCNA_00743 0.52 +2.2 801,239 - CCNA_00743 0.52 -0.4 801,239 - CCNA_00743 0.52 -0.4 801,239 - CCNA_00743 0.52 +0.9 801,239 - CCNA_00743 0.52 +1.4 801,244 - CCNA_00743 0.53 -0.3 801,266 + CCNA_00743 0.57 -0.3 801,274 - CCNA_00743 0.58 -0.8 801,291 + CCNA_00743 0.61 -1.1 801,305 - CCNA_00743 0.64 +0.7 801,320 - CCNA_00743 0.66 -1.1 801,322 - CCNA_00743 0.67 +2.0 801,337 + CCNA_00743 0.69 -0.3 801,342 + CCNA_00743 0.70 +0.6 801,342 + CCNA_00743 0.70 -1.0 801,345 - CCNA_00743 0.71 +0.6 801,345 - CCNA_00743 0.71 -0.9 801,392 + CCNA_00743 0.79 +0.6 801,401 + CCNA_00743 0.81 +0.0 801,402 + CCNA_00743 0.81 +0.5 801,402 + CCNA_00743 0.81 +1.1 801,410 - CCNA_00743 0.82 +0.5 801,418 + CCNA_00743 0.84 +0.4 801,418 + CCNA_00743 0.84 +0.6 801,418 + CCNA_00743 0.84 -0.7 801,435 + CCNA_00743 0.87 -0.2 801,438 - CCNA_00743 0.87 +1.2 801,443 - CCNA_00743 0.88 +1.7 801,469 + -1.2 801,483 + -1.0 801,506 + +1.5 801,556 + -0.4 801,564 + +1.7 801,564 + +0.4 801,572 - -1.1 801,572 - -1.3 801,596 + +2.0 801,596 + -0.0 801,596 + +0.8 801,604 - -0.3 801,604 - +3.1 801,604 - +1.0 801,623 - +0.3 801,628 - +1.1 801,628 - +1.2 801,628 - +0.5 801,643 + -0.4 801,666 + +1.7 801,669 - +0.2 801,674 - -0.6 801,764 + +0.6 801,764 + +0.4 801,777 - +0.6 801,797 + CCNA_00744 0.16 +0.1 801,801 + CCNA_00744 0.17 +0.2 801,801 + CCNA_00744 0.17 -0.8 801,809 - CCNA_00744 0.20 +0.4 801,812 + CCNA_00744 0.21 -0.9 801,842 + CCNA_00744 0.32 +0.3 801,842 - CCNA_00744 0.32 +2.2 801,862 - CCNA_00744 0.39 -1.0 801,867 - CCNA_00744 0.40 -0.7 801,892 + CCNA_00744 0.49 -0.3 801,892 + CCNA_00744 0.49 -1.3 801,892 + CCNA_00744 0.49 -0.7 801,939 - CCNA_00744 0.66 -0.3 801,945 + CCNA_00744 0.68 -0.6 801,965 - CCNA_00744 0.75 +1.4 801,989 - CCNA_00744 0.83 +1.4 801,989 - CCNA_00744 0.83 +0.8 802,047 - +0.9 802,054 - +0.1 802,061 + -1.3 802,061 + -0.4 802,061 + +0.6 802,061 + -1.6 802,064 - -0.2 802,069 - +0.4 802,069 - +0.3 802,069 - +1.6 802,069 - +0.9 802,069 - -0.4 802,069 - +1.2 802,070 + -1.2 802,080 - +0.7 802,093 + -0.3 802,101 - +1.0 802,132 + +0.9 802,140 - +2.2 802,184 + -1.3 802,192 - -0.0 802,192 - -2.5 802,199 + +0.6 802,207 - +0.6 802,214 - +0.6 802,269 - +1.2 802,302 + +1.2 802,310 - -0.1 802,330 + +2.0 802,370 + +0.6 802,393 - -0.9 802,399 - +0.4 802,400 + +1.0 802,415 + +2.0 802,423 - +0.7 802,423 - -0.5 802,423 - +0.2 802,438 + +1.2 802,446 + +1.1 802,494 + +2.4 802,502 - +1.6 802,502 - -0.1
Or see this region's nucleotide sequence