Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00734

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00733 and CCNA_00734 are separated by 53 nucleotidesCCNA_00734 and CCNA_00735 are separated by 61 nucleotidesCCNA_00735 and CCNA_00736 are separated by 112 nucleotides CCNA_00733: CCNA_00733 - GumN superfamily protein, at 790,499 to 791,437 _00733 CCNA_00734: CCNA_00734 - GumN superfamily protein, at 791,491 to 792,399 _00734 CCNA_00735: CCNA_00735 - beta-barrel assembly machine (BAM) protein BamF, at 792,461 to 793,030 _00735 CCNA_00736: CCNA_00736 - lipoprotein signal peptidase, at 793,143 to 793,649 _00736 Position (kb) 791 792 793Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 790.508 kb on + strandat 790.522 kb on + strandat 790.522 kb on + strandat 790.525 kb on - strandat 790.529 kb on + strandat 790.561 kb on + strandat 790.570 kb on - strandat 790.579 kb on + strandat 790.603 kb on + strand, within CCNA_00733at 790.606 kb on - strand, within CCNA_00733at 790.608 kb on + strand, within CCNA_00733at 790.661 kb on + strand, within CCNA_00733at 790.661 kb on + strand, within CCNA_00733at 790.661 kb on + strand, within CCNA_00733at 790.661 kb on + strand, within CCNA_00733at 790.669 kb on - strand, within CCNA_00733at 790.669 kb on - strand, within CCNA_00733at 790.690 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.703 kb on + strand, within CCNA_00733at 790.705 kb on - strand, within CCNA_00733at 790.711 kb on - strand, within CCNA_00733at 790.711 kb on - strand, within CCNA_00733at 790.711 kb on - strand, within CCNA_00733at 790.711 kb on - strand, within CCNA_00733at 790.711 kb on - strand, within CCNA_00733at 790.713 kb on + strand, within CCNA_00733at 790.733 kb on - strand, within CCNA_00733at 790.751 kb on - strand, within CCNA_00733at 790.773 kb on + strand, within CCNA_00733at 790.797 kb on - strand, within CCNA_00733at 790.834 kb on + strand, within CCNA_00733at 790.842 kb on - strand, within CCNA_00733at 790.859 kb on - strand, within CCNA_00733at 790.879 kb on + strand, within CCNA_00733at 790.931 kb on + strand, within CCNA_00733at 790.939 kb on - strand, within CCNA_00733at 790.969 kb on + strand, within CCNA_00733at 790.969 kb on + strand, within CCNA_00733at 790.991 kb on + strand, within CCNA_00733at 790.996 kb on + strand, within CCNA_00733at 791.004 kb on - strand, within CCNA_00733at 791.035 kb on + strand, within CCNA_00733at 791.059 kb on + strand, within CCNA_00733at 791.059 kb on + strand, within CCNA_00733at 791.059 kb on + strand, within CCNA_00733at 791.066 kb on + strand, within CCNA_00733at 791.067 kb on - strand, within CCNA_00733at 791.077 kb on + strand, within CCNA_00733at 791.077 kb on + strand, within CCNA_00733at 791.077 kb on + strand, within CCNA_00733at 791.077 kb on + strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.085 kb on - strand, within CCNA_00733at 791.107 kb on - strand, within CCNA_00733at 791.114 kb on + strand, within CCNA_00733at 791.122 kb on - strand, within CCNA_00733at 791.143 kb on - strand, within CCNA_00733at 791.156 kb on + strand, within CCNA_00733at 791.164 kb on - strand, within CCNA_00733at 791.164 kb on - strand, within CCNA_00733at 791.180 kb on + strand, within CCNA_00733at 791.180 kb on + strand, within CCNA_00733at 791.180 kb on + strand, within CCNA_00733at 791.185 kb on + strand, within CCNA_00733at 791.185 kb on + strand, within CCNA_00733at 791.188 kb on - strand, within CCNA_00733at 791.188 kb on - strand, within CCNA_00733at 791.188 kb on - strand, within CCNA_00733at 791.188 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.193 kb on - strand, within CCNA_00733at 791.203 kb on + strand, within CCNA_00733at 791.206 kb on - strand, within CCNA_00733at 791.221 kb on - strand, within CCNA_00733at 791.221 kb on - strand, within CCNA_00733at 791.227 kb on + strand, within CCNA_00733at 791.235 kb on - strand, within CCNA_00733at 791.244 kb on + strand, within CCNA_00733at 791.292 kb on - strand, within CCNA_00733at 791.299 kb on + strand, within CCNA_00733at 791.299 kb on + strand, within CCNA_00733at 791.315 kb on - strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.320 kb on + strand, within CCNA_00733at 791.328 kb on - strand, within CCNA_00733at 791.342 kb on + strand, within CCNA_00733at 791.342 kb on + strand, within CCNA_00733at 791.351 kb on + strandat 791.372 kb on + strandat 791.372 kb on + strandat 791.481 kb on - strandat 791.490 kb on + strandat 791.490 kb on + strandat 791.500 kb on + strandat 791.500 kb on + strandat 791.508 kb on - strandat 791.510 kb on + strandat 791.515 kb on + strandat 791.520 kb on + strandat 791.608 kb on - strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.741 kb on - strand, within CCNA_00734at 791.748 kb on + strand, within CCNA_00734at 791.757 kb on + strand, within CCNA_00734at 791.765 kb on - strand, within CCNA_00734at 791.811 kb on + strand, within CCNA_00734at 791.848 kb on + strand, within CCNA_00734at 791.856 kb on - strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.940 kb on + strand, within CCNA_00734at 791.993 kb on + strand, within CCNA_00734at 791.995 kb on + strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.072 kb on - strand, within CCNA_00734at 792.104 kb on + strand, within CCNA_00734at 792.112 kb on - strand, within CCNA_00734at 792.148 kb on + strand, within CCNA_00734at 792.187 kb on - strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.260 kb on - strand, within CCNA_00734at 792.273 kb on - strand, within CCNA_00734at 792.301 kb on + strand, within CCNA_00734at 792.302 kb on + strand, within CCNA_00734at 792.305 kb on - strand, within CCNA_00734at 792.376 kb on + strandat 792.410 kb on + strandat 792.410 kb on + strandat 792.418 kb on - strandat 792.425 kb on + strandat 792.425 kb on + strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.508 kb on - strandat 792.555 kb on - strand, within CCNA_00735at 792.620 kb on - strand, within CCNA_00735at 793.036 kb on - strandat 793.047 kb on + strandat 793.105 kb on + strandat 793.113 kb on - strandat 793.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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790,508 + +0.4
790,522 + +1.1
790,522 + +1.4
790,525 - -0.1
790,529 + +1.9
790,561 + +0.2
790,570 - +1.9
790,579 + +1.1
790,603 + CCNA_00733 0.11 +2.8
790,606 - CCNA_00733 0.11 -0.8
790,608 + CCNA_00733 0.12 +1.7
790,661 + CCNA_00733 0.17 +0.4
790,661 + CCNA_00733 0.17 +0.9
790,661 + CCNA_00733 0.17 +1.3
790,661 + CCNA_00733 0.17 +0.7
790,669 - CCNA_00733 0.18 -0.5
790,669 - CCNA_00733 0.18 +1.7
790,690 + CCNA_00733 0.20 +2.3
790,703 + CCNA_00733 0.22 +1.5
790,703 + CCNA_00733 0.22 +0.9
790,703 + CCNA_00733 0.22 +1.2
790,703 + CCNA_00733 0.22 +1.5
790,703 + CCNA_00733 0.22 +1.9
790,703 + CCNA_00733 0.22 +1.4
790,705 - CCNA_00733 0.22 +0.1
790,711 - CCNA_00733 0.23 -0.1
790,711 - CCNA_00733 0.23 -1.8
790,711 - CCNA_00733 0.23 -0.1
790,711 - CCNA_00733 0.23 -1.7
790,711 - CCNA_00733 0.23 +1.6
790,713 + CCNA_00733 0.23 -0.9
790,733 - CCNA_00733 0.25 -0.6
790,751 - CCNA_00733 0.27 +1.4
790,773 + CCNA_00733 0.29 +0.8
790,797 - CCNA_00733 0.32 -1.2
790,834 + CCNA_00733 0.36 +1.5
790,842 - CCNA_00733 0.37 -0.7
790,859 - CCNA_00733 0.38 -0.0
790,879 + CCNA_00733 0.40 +0.4
790,931 + CCNA_00733 0.46 +2.9
790,939 - CCNA_00733 0.47 -1.6
790,969 + CCNA_00733 0.50 +0.6
790,969 + CCNA_00733 0.50 +0.8
790,991 + CCNA_00733 0.52 +1.0
790,996 + CCNA_00733 0.53 +1.1
791,004 - CCNA_00733 0.54 -1.2
791,035 + CCNA_00733 0.57 -1.7
791,059 + CCNA_00733 0.60 +0.7
791,059 + CCNA_00733 0.60 +1.3
791,059 + CCNA_00733 0.60 +0.6
791,066 + CCNA_00733 0.60 +0.7
791,067 - CCNA_00733 0.60 +0.9
791,077 + CCNA_00733 0.62 +2.2
791,077 + CCNA_00733 0.62 +0.2
791,077 + CCNA_00733 0.62 +3.2
791,077 + CCNA_00733 0.62 +0.6
791,085 - CCNA_00733 0.62 -2.1
791,085 - CCNA_00733 0.62 +2.9
791,085 - CCNA_00733 0.62 -0.7
791,085 - CCNA_00733 0.62 -2.0
791,085 - CCNA_00733 0.62 +0.5
791,085 - CCNA_00733 0.62 -0.8
791,085 - CCNA_00733 0.62 +1.2
791,085 - CCNA_00733 0.62 +0.1
791,085 - CCNA_00733 0.62 -0.4
791,107 - CCNA_00733 0.65 +0.6
791,114 + CCNA_00733 0.65 +2.0
791,122 - CCNA_00733 0.66 +0.9
791,143 - CCNA_00733 0.69 +0.6
791,156 + CCNA_00733 0.70 +1.2
791,164 - CCNA_00733 0.71 +0.1
791,164 - CCNA_00733 0.71 +0.0
791,180 + CCNA_00733 0.73 +0.1
791,180 + CCNA_00733 0.73 +0.9
791,180 + CCNA_00733 0.73 +0.2
791,185 + CCNA_00733 0.73 +2.6
791,185 + CCNA_00733 0.73 +1.6
791,188 - CCNA_00733 0.73 +2.6
791,188 - CCNA_00733 0.73 -0.1
791,188 - CCNA_00733 0.73 -0.1
791,188 - CCNA_00733 0.73 +1.7
791,193 - CCNA_00733 0.74 +0.4
791,193 - CCNA_00733 0.74 -0.0
791,193 - CCNA_00733 0.74 -0.4
791,193 - CCNA_00733 0.74 +2.6
791,193 - CCNA_00733 0.74 +1.0
791,193 - CCNA_00733 0.74 +1.2
791,193 - CCNA_00733 0.74 +0.4
791,193 - CCNA_00733 0.74 +2.2
791,193 - CCNA_00733 0.74 -0.4
791,193 - CCNA_00733 0.74 +0.4
791,203 + CCNA_00733 0.75 +0.6
791,206 - CCNA_00733 0.75 +0.8
791,221 - CCNA_00733 0.77 -0.4
791,221 - CCNA_00733 0.77 +1.0
791,227 + CCNA_00733 0.78 -0.5
791,235 - CCNA_00733 0.78 +0.4
791,244 + CCNA_00733 0.79 +0.6
791,292 - CCNA_00733 0.84 -1.3
791,299 + CCNA_00733 0.85 +2.6
791,299 + CCNA_00733 0.85 +0.0
791,315 - CCNA_00733 0.87 -1.0
791,320 + CCNA_00733 0.87 +1.7
791,320 + CCNA_00733 0.87 +0.3
791,320 + CCNA_00733 0.87 +1.0
791,320 + CCNA_00733 0.87 +1.6
791,320 + CCNA_00733 0.87 +0.0
791,320 + CCNA_00733 0.87 +0.4
791,320 + CCNA_00733 0.87 +0.2
791,328 - CCNA_00733 0.88 -0.7
791,342 + CCNA_00733 0.90 -0.6
791,342 + CCNA_00733 0.90 +0.1
791,351 + -0.8
791,372 + +2.2
791,372 + -0.0
791,481 - -0.1
791,490 + +1.4
791,490 + +1.8
791,500 + +1.2
791,500 + +0.4
791,508 - +0.9
791,510 + +0.7
791,515 + +1.3
791,520 + +0.3
791,608 - CCNA_00734 0.13 +0.6
791,643 + CCNA_00734 0.17 +2.3
791,643 + CCNA_00734 0.17 +1.3
791,643 + CCNA_00734 0.17 -1.3
791,723 - CCNA_00734 0.26 -1.1
791,723 - CCNA_00734 0.26 +0.8
791,723 - CCNA_00734 0.26 -0.9
791,741 - CCNA_00734 0.28 +0.1
791,748 + CCNA_00734 0.28 +1.1
791,757 + CCNA_00734 0.29 +0.3
791,765 - CCNA_00734 0.30 +0.1
791,811 + CCNA_00734 0.35 +2.0
791,848 + CCNA_00734 0.39 +0.4
791,856 - CCNA_00734 0.40 -0.2
791,923 + CCNA_00734 0.48 +1.6
791,923 + CCNA_00734 0.48 -0.3
791,923 + CCNA_00734 0.48 +1.2
791,923 + CCNA_00734 0.48 +1.8
791,923 + CCNA_00734 0.48 +1.9
791,923 + CCNA_00734 0.48 +1.8
791,931 - CCNA_00734 0.48 -0.3
791,931 - CCNA_00734 0.48 +0.2
791,940 + CCNA_00734 0.49 +0.7
791,993 + CCNA_00734 0.55 +1.7
791,995 + CCNA_00734 0.55 +2.1
792,003 - CCNA_00734 0.56 -1.5
792,003 - CCNA_00734 0.56 +1.1
792,072 - CCNA_00734 0.64 +2.7
792,104 + CCNA_00734 0.67 -0.7
792,112 - CCNA_00734 0.68 -1.5
792,148 + CCNA_00734 0.72 -0.1
792,187 - CCNA_00734 0.77 -0.7
792,246 + CCNA_00734 0.83 -0.6
792,246 + CCNA_00734 0.83 -1.4
792,260 - CCNA_00734 0.85 +2.5
792,273 - CCNA_00734 0.86 +0.9
792,301 + CCNA_00734 0.89 -1.4
792,302 + CCNA_00734 0.89 +0.6
792,305 - CCNA_00734 0.90 +0.3
792,376 + -0.1
792,410 + +2.8
792,410 + +3.1
792,418 - +2.3
792,425 + +1.2
792,425 + +0.3
792,433 - +4.8
792,433 - +4.9
792,433 - +5.1
792,433 - +4.7
792,508 - +2.7
792,555 - CCNA_00735 0.16 +3.1
792,620 - CCNA_00735 0.28 +0.2
793,036 - +1.6
793,047 + -0.8
793,105 + +0.2
793,113 - -0.5
793,113 - +2.2

Or see this region's nucleotide sequence