Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00730

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00729 and CCNA_00730 are separated by 75 nucleotidesCCNA_00730 and CCNA_00731 are separated by 159 nucleotides CCNA_00729: CCNA_00729 - hypothetical protein, at 785,054 to 786,358 _00729 CCNA_00730: CCNA_00730 - SkaA-family transcriptional regulator, at 786,434 to 787,201 _00730 CCNA_00731: CCNA_00731 - DNA mismatch repair protein mutL, at 787,361 to 789,274 _00731 Position (kb) 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 785.443 kb on - strand, within CCNA_00729at 785.499 kb on - strand, within CCNA_00729at 785.499 kb on - strand, within CCNA_00729at 785.517 kb on - strand, within CCNA_00729at 785.602 kb on + strand, within CCNA_00729at 785.648 kb on - strand, within CCNA_00729at 785.691 kb on + strand, within CCNA_00729at 785.699 kb on - strand, within CCNA_00729at 785.701 kb on + strand, within CCNA_00729at 785.701 kb on + strand, within CCNA_00729at 785.709 kb on - strand, within CCNA_00729at 785.734 kb on - strand, within CCNA_00729at 785.739 kb on + strand, within CCNA_00729at 785.772 kb on + strand, within CCNA_00729at 785.782 kb on + strand, within CCNA_00729at 785.782 kb on + strand, within CCNA_00729at 785.790 kb on - strand, within CCNA_00729at 785.790 kb on - strand, within CCNA_00729at 785.801 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.812 kb on + strand, within CCNA_00729at 785.820 kb on - strand, within CCNA_00729at 785.820 kb on - strand, within CCNA_00729at 785.822 kb on + strand, within CCNA_00729at 785.822 kb on + strand, within CCNA_00729at 785.848 kb on + strand, within CCNA_00729at 785.878 kb on + strand, within CCNA_00729at 785.945 kb on + strand, within CCNA_00729at 786.019 kb on + strand, within CCNA_00729at 786.022 kb on - strand, within CCNA_00729at 786.027 kb on - strand, within CCNA_00729at 786.043 kb on - strand, within CCNA_00729at 786.051 kb on + strand, within CCNA_00729at 786.059 kb on - strand, within CCNA_00729at 786.071 kb on + strand, within CCNA_00729at 786.092 kb on - strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.108 kb on + strand, within CCNA_00729at 786.110 kb on - strand, within CCNA_00729at 786.116 kb on - strand, within CCNA_00729at 786.116 kb on - strand, within CCNA_00729at 786.127 kb on + strand, within CCNA_00729at 786.142 kb on + strand, within CCNA_00729at 786.187 kb on - strand, within CCNA_00729at 786.195 kb on + strand, within CCNA_00729at 786.201 kb on - strand, within CCNA_00729at 786.205 kb on - strand, within CCNA_00729at 786.233 kb on + strandat 786.262 kb on + strandat 786.269 kb on + strandat 786.269 kb on + strandat 786.269 kb on + strandat 786.277 kb on - strandat 786.277 kb on - strandat 786.312 kb on - strandat 786.329 kb on + strandat 786.329 kb on + strandat 786.329 kb on + strandat 786.337 kb on - strandat 786.337 kb on - strandat 786.337 kb on - strandat 786.340 kb on + strandat 786.340 kb on + strandat 786.348 kb on - strandat 786.348 kb on - strandat 786.375 kb on + strandat 786.381 kb on + strandat 786.392 kb on + strandat 786.395 kb on - strandat 786.395 kb on - strandat 786.400 kb on - strandat 786.400 kb on - strandat 786.449 kb on + strandat 786.476 kb on + strandat 786.488 kb on + strandat 786.488 kb on + strandat 786.523 kb on + strand, within CCNA_00730at 786.525 kb on - strand, within CCNA_00730at 786.531 kb on - strand, within CCNA_00730at 786.586 kb on + strand, within CCNA_00730at 786.595 kb on + strand, within CCNA_00730at 786.608 kb on + strand, within CCNA_00730at 786.608 kb on + strand, within CCNA_00730at 786.628 kb on + strand, within CCNA_00730at 786.628 kb on + strand, within CCNA_00730at 786.636 kb on - strand, within CCNA_00730at 786.638 kb on + strand, within CCNA_00730at 786.647 kb on - strand, within CCNA_00730at 786.647 kb on - strand, within CCNA_00730at 786.649 kb on + strand, within CCNA_00730at 786.654 kb on + strand, within CCNA_00730at 786.707 kb on + strand, within CCNA_00730at 786.725 kb on - strand, within CCNA_00730at 786.735 kb on + strand, within CCNA_00730at 786.749 kb on - strand, within CCNA_00730at 786.757 kb on + strand, within CCNA_00730at 786.757 kb on + strand, within CCNA_00730at 786.835 kb on - strand, within CCNA_00730at 786.850 kb on - strand, within CCNA_00730at 786.891 kb on - strand, within CCNA_00730at 786.897 kb on - strand, within CCNA_00730at 786.903 kb on + strand, within CCNA_00730at 786.904 kb on - strand, within CCNA_00730at 786.916 kb on + strand, within CCNA_00730at 786.922 kb on + strand, within CCNA_00730at 786.924 kb on - strand, within CCNA_00730at 786.924 kb on - strand, within CCNA_00730at 786.928 kb on + strand, within CCNA_00730at 786.928 kb on + strand, within CCNA_00730at 786.936 kb on - strand, within CCNA_00730at 786.940 kb on + strand, within CCNA_00730at 786.940 kb on + strand, within CCNA_00730at 786.948 kb on - strand, within CCNA_00730at 786.964 kb on + strand, within CCNA_00730at 786.964 kb on + strand, within CCNA_00730at 786.971 kb on + strand, within CCNA_00730at 786.972 kb on - strand, within CCNA_00730at 786.976 kb on + strand, within CCNA_00730at 787.022 kb on + strand, within CCNA_00730at 787.030 kb on - strand, within CCNA_00730at 787.032 kb on + strand, within CCNA_00730at 787.070 kb on + strand, within CCNA_00730at 787.125 kb on - strandat 787.151 kb on + strandat 787.159 kb on + strandat 787.159 kb on + strandat 787.167 kb on - strandat 787.167 kb on - strandat 787.204 kb on + strandat 787.254 kb on + strandat 787.307 kb on - strandat 787.352 kb on + strandat 787.360 kb on - strandat 787.360 kb on - strandat 787.360 kb on - strandat 787.368 kb on + strandat 787.438 kb on - strandat 787.443 kb on - strandat 787.451 kb on + strandat 787.452 kb on + strandat 787.533 kb on + strandat 787.534 kb on - strandat 787.534 kb on - strandat 787.536 kb on + strandat 787.549 kb on - strandat 787.549 kb on - strandat 787.549 kb on - strandat 787.553 kb on - strand, within CCNA_00731at 787.554 kb on - strand, within CCNA_00731at 787.566 kb on + strand, within CCNA_00731at 787.572 kb on - strand, within CCNA_00731at 787.579 kb on - strand, within CCNA_00731at 787.629 kb on + strand, within CCNA_00731at 787.631 kb on - strand, within CCNA_00731at 787.637 kb on - strand, within CCNA_00731at 787.656 kb on + strand, within CCNA_00731at 787.658 kb on + strand, within CCNA_00731at 787.666 kb on - strand, within CCNA_00731at 787.666 kb on - strand, within CCNA_00731at 787.666 kb on - strandat 787.666 kb on - strand, within CCNA_00731at 787.675 kb on + strand, within CCNA_00731at 787.693 kb on - strand, within CCNA_00731at 787.696 kb on + strand, within CCNA_00731at 787.696 kb on + strand, within CCNA_00731at 787.696 kb on + strand, within CCNA_00731at 787.704 kb on - strand, within CCNA_00731at 787.704 kb on - strand, within CCNA_00731at 787.704 kb on - strand, within CCNA_00731at 787.734 kb on + strand, within CCNA_00731at 787.789 kb on - strand, within CCNA_00731at 787.815 kb on + strand, within CCNA_00731at 787.815 kb on + strand, within CCNA_00731at 787.841 kb on + strand, within CCNA_00731at 787.849 kb on - strand, within CCNA_00731at 787.849 kb on - strand, within CCNA_00731at 787.858 kb on + strand, within CCNA_00731at 787.883 kb on + strand, within CCNA_00731at 787.896 kb on - strand, within CCNA_00731at 787.901 kb on + strand, within CCNA_00731at 787.904 kb on - strand, within CCNA_00731at 787.972 kb on + strand, within CCNA_00731at 788.018 kb on - strand, within CCNA_00731at 788.018 kb on - strand, within CCNA_00731at 788.028 kb on + strand, within CCNA_00731at 788.028 kb on + strand, within CCNA_00731at 788.028 kb on + strand, within CCNA_00731at 788.036 kb on - strand, within CCNA_00731at 788.036 kb on - strand, within CCNA_00731at 788.036 kb on - strand, within CCNA_00731at 788.055 kb on + strand, within CCNA_00731at 788.055 kb on + strand, within CCNA_00731at 788.055 kb on + strand, within CCNA_00731at 788.081 kb on - strand, within CCNA_00731at 788.091 kb on - strand, within CCNA_00731at 788.093 kb on + strand, within CCNA_00731at 788.095 kb on - strand, within CCNA_00731at 788.124 kb on - strand, within CCNA_00731at 788.198 kb on + strand, within CCNA_00731at 788.199 kb on - strand, within CCNA_00731

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
785,443 - CCNA_00729 0.30 +0.9
785,499 - CCNA_00729 0.34 -1.8
785,499 - CCNA_00729 0.34 -0.2
785,517 - CCNA_00729 0.35 -0.8
785,602 + CCNA_00729 0.42 +1.9
785,648 - CCNA_00729 0.46 +1.6
785,691 + CCNA_00729 0.49 +0.8
785,699 - CCNA_00729 0.49 -1.3
785,701 + CCNA_00729 0.50 +0.3
785,701 + CCNA_00729 0.50 +0.1
785,709 - CCNA_00729 0.50 +0.2
785,734 - CCNA_00729 0.52 +0.6
785,739 + CCNA_00729 0.52 +1.4
785,772 + CCNA_00729 0.55 +1.8
785,782 + CCNA_00729 0.56 +0.9
785,782 + CCNA_00729 0.56 +1.6
785,790 - CCNA_00729 0.56 +0.5
785,790 - CCNA_00729 0.56 +1.1
785,801 + CCNA_00729 0.57 +2.0
785,812 + CCNA_00729 0.58 +3.0
785,812 + CCNA_00729 0.58 +0.6
785,812 + CCNA_00729 0.58 -0.2
785,820 - CCNA_00729 0.59 -0.9
785,820 - CCNA_00729 0.59 -0.2
785,822 + CCNA_00729 0.59 -0.5
785,822 + CCNA_00729 0.59 -0.6
785,848 + CCNA_00729 0.61 +2.5
785,878 + CCNA_00729 0.63 +2.4
785,945 + CCNA_00729 0.68 +1.4
786,019 + CCNA_00729 0.74 +1.8
786,022 - CCNA_00729 0.74 +0.7
786,027 - CCNA_00729 0.75 -1.7
786,043 - CCNA_00729 0.76 -0.6
786,051 + CCNA_00729 0.76 +1.1
786,059 - CCNA_00729 0.77 +0.3
786,071 + CCNA_00729 0.78 +0.8
786,092 - CCNA_00729 0.80 +0.2
786,108 + CCNA_00729 0.81 +0.8
786,108 + CCNA_00729 0.81 +1.5
786,108 + CCNA_00729 0.81 +0.8
786,108 + CCNA_00729 0.81 +1.7
786,110 - CCNA_00729 0.81 +0.9
786,116 - CCNA_00729 0.81 +1.0
786,116 - CCNA_00729 0.81 +0.0
786,127 + CCNA_00729 0.82 +1.0
786,142 + CCNA_00729 0.83 +1.5
786,187 - CCNA_00729 0.87 -0.1
786,195 + CCNA_00729 0.87 +2.0
786,201 - CCNA_00729 0.88 -1.2
786,205 - CCNA_00729 0.88 +0.6
786,233 + +3.3
786,262 + +1.2
786,269 + +3.0
786,269 + +2.4
786,269 + +3.4
786,277 - +0.7
786,277 - -0.9
786,312 - -0.9
786,329 + +2.5
786,329 + +2.5
786,329 + +2.7
786,337 - +0.7
786,337 - -0.1
786,337 - -0.8
786,340 + +1.7
786,340 + +1.3
786,348 - +1.7
786,348 - +1.4
786,375 + +0.3
786,381 + +5.2
786,392 + +3.2
786,395 - -1.9
786,395 - +1.2
786,400 - +1.4
786,400 - +0.2
786,449 + +1.6
786,476 + +0.4
786,488 + +1.4
786,488 + +1.2
786,523 + CCNA_00730 0.12 +0.7
786,525 - CCNA_00730 0.12 -0.2
786,531 - CCNA_00730 0.13 +1.4
786,586 + CCNA_00730 0.20 -0.5
786,595 + CCNA_00730 0.21 +2.0
786,608 + CCNA_00730 0.23 +0.9
786,608 + CCNA_00730 0.23 +1.1
786,628 + CCNA_00730 0.25 +0.4
786,628 + CCNA_00730 0.25 -0.4
786,636 - CCNA_00730 0.26 +3.3
786,638 + CCNA_00730 0.27 +0.9
786,647 - CCNA_00730 0.28 +1.1
786,647 - CCNA_00730 0.28 -1.1
786,649 + CCNA_00730 0.28 +1.0
786,654 + CCNA_00730 0.29 -0.4
786,707 + CCNA_00730 0.36 +1.1
786,725 - CCNA_00730 0.38 +1.2
786,735 + CCNA_00730 0.39 +5.0
786,749 - CCNA_00730 0.41 -0.7
786,757 + CCNA_00730 0.42 +5.2
786,757 + CCNA_00730 0.42 +5.4
786,835 - CCNA_00730 0.52 -0.0
786,850 - CCNA_00730 0.54 +1.8
786,891 - CCNA_00730 0.60 +0.1
786,897 - CCNA_00730 0.60 +0.5
786,903 + CCNA_00730 0.61 +0.8
786,904 - CCNA_00730 0.61 -0.1
786,916 + CCNA_00730 0.63 -0.2
786,922 + CCNA_00730 0.64 +0.4
786,924 - CCNA_00730 0.64 -0.8
786,924 - CCNA_00730 0.64 -0.5
786,928 + CCNA_00730 0.64 -0.4
786,928 + CCNA_00730 0.64 -0.4
786,936 - CCNA_00730 0.65 +2.4
786,940 + CCNA_00730 0.66 +0.1
786,940 + CCNA_00730 0.66 +2.2
786,948 - CCNA_00730 0.67 +0.6
786,964 + CCNA_00730 0.69 +2.0
786,964 + CCNA_00730 0.69 +1.4
786,971 + CCNA_00730 0.70 +2.0
786,972 - CCNA_00730 0.70 -0.3
786,976 + CCNA_00730 0.71 -1.9
787,022 + CCNA_00730 0.77 +0.0
787,030 - CCNA_00730 0.78 -0.0
787,032 + CCNA_00730 0.78 -1.0
787,070 + CCNA_00730 0.83 +2.2
787,125 - -1.9
787,151 + +1.7
787,159 + +0.5
787,159 + +1.1
787,167 - +1.6
787,167 - +1.7
787,204 + +0.6
787,254 + +1.6
787,307 - +1.9
787,352 + -0.0
787,360 - +2.1
787,360 - +2.5
787,360 - +1.2
787,368 + +0.7
787,438 - +1.3
787,443 - +1.6
787,451 + +2.8
787,452 + +1.3
787,533 + +1.5
787,534 - +1.7
787,534 - +1.6
787,536 + +0.8
787,549 - +1.2
787,549 - +1.5
787,549 - +2.0
787,553 - CCNA_00731 0.10 +2.2
787,554 - CCNA_00731 0.10 +2.5
787,566 + CCNA_00731 0.11 -0.4
787,572 - CCNA_00731 0.11 +1.9
787,579 - CCNA_00731 0.11 +1.4
787,629 + CCNA_00731 0.14 -0.5
787,631 - CCNA_00731 0.14 +0.5
787,637 - CCNA_00731 0.14 +1.7
787,656 + CCNA_00731 0.15 +1.6
787,658 + CCNA_00731 0.16 -1.1
787,666 - CCNA_00731 0.16 +1.4
787,666 - CCNA_00731 0.16 +1.7
787,666 - +2.6
787,666 - CCNA_00731 0.16 +0.4
787,675 + CCNA_00731 0.16 +0.1
787,693 - CCNA_00731 0.17 +1.0
787,696 + CCNA_00731 0.18 +0.2
787,696 + CCNA_00731 0.18 -0.8
787,696 + CCNA_00731 0.18 +0.8
787,704 - CCNA_00731 0.18 +0.9
787,704 - CCNA_00731 0.18 -0.3
787,704 - CCNA_00731 0.18 +1.0
787,734 + CCNA_00731 0.19 +1.6
787,789 - CCNA_00731 0.22 +2.2
787,815 + CCNA_00731 0.24 -0.0
787,815 + CCNA_00731 0.24 -0.4
787,841 + CCNA_00731 0.25 +1.0
787,849 - CCNA_00731 0.25 +1.5
787,849 - CCNA_00731 0.25 -0.3
787,858 + CCNA_00731 0.26 +1.2
787,883 + CCNA_00731 0.27 +2.4
787,896 - CCNA_00731 0.28 +0.1
787,901 + CCNA_00731 0.28 +1.6
787,904 - CCNA_00731 0.28 +0.7
787,972 + CCNA_00731 0.32 +0.2
788,018 - CCNA_00731 0.34 +0.2
788,018 - CCNA_00731 0.34 +1.1
788,028 + CCNA_00731 0.35 -0.7
788,028 + CCNA_00731 0.35 +0.7
788,028 + CCNA_00731 0.35 -0.5
788,036 - CCNA_00731 0.35 +1.4
788,036 - CCNA_00731 0.35 +1.5
788,036 - CCNA_00731 0.35 +1.9
788,055 + CCNA_00731 0.36 +2.9
788,055 + CCNA_00731 0.36 +0.5
788,055 + CCNA_00731 0.36 -0.3
788,081 - CCNA_00731 0.38 +1.3
788,091 - CCNA_00731 0.38 +3.7
788,093 + CCNA_00731 0.38 -1.3
788,095 - CCNA_00731 0.38 +1.0
788,124 - CCNA_00731 0.40 +1.1
788,198 + CCNA_00731 0.44 -0.0
788,199 - CCNA_00731 0.44 +0.7

Or see this region's nucleotide sequence