Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00699 and CCNA_00700 are separated by 718 nucleotides CCNA_00700 and CCNA_00701 are separated by 586 nucleotides CCNA_00701 and CCNA_03888 are separated by 144 nucleotides
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820
_00701
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 758.341 kb on + strand, within CCNA_00699 at 758.341 kb on + strand, within CCNA_00699 at 758.353 kb on + strand at 758.353 kb on + strand at 758.375 kb on + strand at 758.525 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.567 kb on - strand at 758.601 kb on - strand at 759.060 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.067 kb on + strand at 759.085 kb on - strand at 759.085 kb on - strand at 759.112 kb on + strand at 759.147 kb on + strand at 759.202 kb on - strand at 759.203 kb on + strand at 759.236 kb on + strand at 759.249 kb on + strand at 759.289 kb on - strand at 759.291 kb on - strand at 759.292 kb on + strand, within CCNA_00700 at 759.300 kb on - strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.344 kb on + strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.383 kb on + strand, within CCNA_00700 at 759.391 kb on - strand, within CCNA_00700 at 759.407 kb on - strand, within CCNA_00700 at 759.418 kb on + strand, within CCNA_00700 at 759.420 kb on - strand, within CCNA_00700 at 759.424 kb on + strand, within CCNA_00700 at 759.432 kb on - strand, within CCNA_00700 at 759.432 kb on - strand, within CCNA_00700 at 759.465 kb on + strand, within CCNA_00700 at 759.465 kb on + strand, within CCNA_00700 at 759.473 kb on - strand, within CCNA_00700 at 759.473 kb on - strand, within CCNA_00700 at 759.473 kb on - strand, within CCNA_00700 at 759.473 kb on - strand, within CCNA_00700 at 759.478 kb on - strand, within CCNA_00700 at 759.489 kb on + strand, within CCNA_00700 at 759.497 kb on - strand, within CCNA_00700 at 759.522 kb on + strand, within CCNA_00700 at 759.532 kb on - strand, within CCNA_00700 at 759.532 kb on - strand, within CCNA_00700 at 759.555 kb on - strand, within CCNA_00700 at 759.570 kb on + strand, within CCNA_00700 at 759.583 kb on - strand, within CCNA_00700 at 759.593 kb on - strand, within CCNA_00700 at 759.594 kb on - strand, within CCNA_00700 at 759.631 kb on - strand, within CCNA_00700 at 759.638 kb on + strand, within CCNA_00700 at 759.646 kb on - strand, within CCNA_00700 at 759.648 kb on + strand, within CCNA_00700 at 759.656 kb on - strand, within CCNA_00700 at 759.734 kb on + strand, within CCNA_00700 at 759.740 kb on + strand, within CCNA_00700 at 759.742 kb on - strand, within CCNA_00700 at 759.756 kb on + strand, within CCNA_00700 at 759.762 kb on - strand, within CCNA_00700 at 759.764 kb on - strand, within CCNA_00700 at 759.764 kb on - strand, within CCNA_00700 at 759.784 kb on + strand, within CCNA_00700 at 759.784 kb on + strand, within CCNA_00700 at 759.784 kb on + strand, within CCNA_00700 at 759.819 kb on + strand, within CCNA_00700 at 759.819 kb on + strand, within CCNA_00700 at 759.822 kb on - strand, within CCNA_00700 at 759.859 kb on + strand, within CCNA_00700 at 759.860 kb on - strand, within CCNA_00700 at 759.867 kb on - strand, within CCNA_00700 at 759.879 kb on + strand, within CCNA_00700 at 759.879 kb on + strand at 759.899 kb on + strand, within CCNA_00700 at 759.907 kb on - strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.928 kb on - strand, within CCNA_00700 at 759.947 kb on + strand, within CCNA_00700 at 759.955 kb on - strand, within CCNA_00700 at 759.956 kb on + strand, within CCNA_00700 at 759.997 kb on + strand, within CCNA_00700 at 760.005 kb on - strand, within CCNA_00700 at 760.005 kb on - strand, within CCNA_00700 at 760.017 kb on - strand, within CCNA_00700 at 760.040 kb on - strand, within CCNA_00700 at 760.071 kb on - strand, within CCNA_00700 at 760.074 kb on + strand, within CCNA_00700 at 760.140 kb on - strand, within CCNA_00700 at 760.149 kb on + strand, within CCNA_00700 at 760.164 kb on + strand, within CCNA_00700 at 760.164 kb on + strand, within CCNA_00700 at 760.172 kb on - strand, within CCNA_00700 at 760.172 kb on - strand, within CCNA_00700 at 760.177 kb on + strand, within CCNA_00700 at 760.190 kb on - strand, within CCNA_00700 at 760.223 kb on + strand, within CCNA_00700 at 760.236 kb on + strand at 760.243 kb on + strand, within CCNA_00700 at 760.253 kb on + strand, within CCNA_00700 at 760.258 kb on + strand, within CCNA_00700 at 760.258 kb on + strand, within CCNA_00700 at 760.263 kb on + strand, within CCNA_00700 at 760.263 kb on + strand, within CCNA_00700 at 760.266 kb on - strand, within CCNA_00700 at 760.266 kb on - strand, within CCNA_00700 at 760.270 kb on + strand, within CCNA_00700 at 760.280 kb on + strand, within CCNA_00700 at 760.288 kb on - strand, within CCNA_00700 at 760.288 kb on - strand, within CCNA_00700 at 760.341 kb on + strand, within CCNA_00700 at 760.358 kb on + strand, within CCNA_00700 at 760.397 kb on + strand, within CCNA_00700 at 760.411 kb on + strand, within CCNA_00700 at 760.419 kb on - strand, within CCNA_00700 at 760.460 kb on - strand, within CCNA_00700 at 760.467 kb on + strand, within CCNA_00700 at 760.475 kb on - strand, within CCNA_00700 at 760.513 kb on - strand at 760.523 kb on - strand, within CCNA_00700 at 760.547 kb on - strand, within CCNA_00700 at 760.575 kb on - strand, within CCNA_00700 at 760.577 kb on + strand, within CCNA_00700 at 760.577 kb on + strand, within CCNA_00700 at 760.585 kb on - strand, within CCNA_00700 at 760.585 kb on - strand, within CCNA_00700 at 760.585 kb on - strand, within CCNA_00700 at 760.585 kb on - strand, within CCNA_00700 at 760.629 kb on + strand, within CCNA_00700 at 760.637 kb on - strand, within CCNA_00700 at 760.655 kb on + strand, within CCNA_00700 at 760.669 kb on - strand, within CCNA_00700 at 760.705 kb on - strand, within CCNA_00700 at 760.723 kb on + strand, within CCNA_00700 at 760.723 kb on + strand, within CCNA_00700 at 760.756 kb on + strand, within CCNA_00700 at 760.786 kb on - strand, within CCNA_00700 at 760.801 kb on + strand, within CCNA_00700 at 760.809 kb on - strand, within CCNA_00700 at 760.829 kb on - strand, within CCNA_00700 at 760.841 kb on + strand at 760.864 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.896 kb on - strand at 760.950 kb on + strand at 760.958 kb on - strand at 760.989 kb on + strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.130 kb on - strand at 761.135 kb on + strand at 761.143 kb on - strand at 761.146 kb on + strand at 761.213 kb on + strand at 761.231 kb on + strand at 761.252 kb on + strand at 761.275 kb on - strand at 761.544 kb on - strand at 761.544 kb on - strand at 761.580 kb on - strand at 761.580 kb on - strand at 761.610 kb on + strand at 761.632 kb on - strand, within CCNA_00701 at 761.650 kb on + strand, within CCNA_00701 at 761.651 kb on + strand, within CCNA_00701 at 761.667 kb on + strand, within CCNA_00701 at 761.670 kb on - strand, within CCNA_00701 at 761.671 kb on + strand, within CCNA_00701 at 761.675 kb on - strand, within CCNA_00701 at 761.689 kb on - strand, within CCNA_00701 at 761.717 kb on + strand, within CCNA_00701 at 761.717 kb on + strand at 761.722 kb on + strand, within CCNA_00701 at 761.725 kb on - strand, within CCNA_00701 at 761.730 kb on - strand, within CCNA_00701 at 761.743 kb on + strand, within CCNA_00701 at 761.751 kb on + strand, within CCNA_00701 at 761.751 kb on - strand, within CCNA_00701 at 761.759 kb on - strand, within CCNA_00701 at 761.776 kb on - strand, within CCNA_00701 at 761.785 kb on + strand, within CCNA_00701 at 761.831 kb on + strand at 761.839 kb on - strand at 761.839 kb on - strand at 761.848 kb on + strand at 761.849 kb on - strand at 761.856 kb on - strand at 761.905 kb on - strand at 761.907 kb on + strand at 761.910 kb on - strand at 761.921 kb on + strand at 761.932 kb on + strand at 761.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 758,341 + CCNA_00699 0.87 +5.2 758,341 + CCNA_00699 0.87 +5.3 758,353 + +4.3 758,353 + +5.4 758,375 + +5.3 758,525 + +1.3 758,541 - -0.0 758,541 - +0.7 758,567 - -0.2 758,601 - +0.8 759,060 + +2.9 759,067 + -1.2 759,067 + +0.3 759,067 + -0.2 759,085 - -1.7 759,085 - -0.3 759,112 + +0.3 759,147 + +5.0 759,202 - -0.2 759,203 + -1.1 759,236 + +1.5 759,249 + +0.5 759,289 - +1.3 759,291 - +0.8 759,292 + CCNA_00700 0.10 +0.4 759,300 - CCNA_00700 0.10 +0.4 759,339 + CCNA_00700 0.12 +2.1 759,339 + CCNA_00700 0.12 -0.2 759,339 + CCNA_00700 0.12 +0.2 759,339 + CCNA_00700 0.12 -0.1 759,339 + CCNA_00700 0.12 +1.3 759,339 + CCNA_00700 0.12 +1.1 759,339 + CCNA_00700 0.12 +0.2 759,339 + CCNA_00700 0.12 +0.1 759,339 + CCNA_00700 0.12 -0.2 759,339 + CCNA_00700 0.12 +1.2 759,339 + CCNA_00700 0.12 -0.8 759,339 + CCNA_00700 0.12 +2.0 759,339 + CCNA_00700 0.12 +0.6 759,339 + CCNA_00700 0.12 +1.6 759,339 + CCNA_00700 0.12 -1.3 759,339 + CCNA_00700 0.12 -0.1 759,344 + CCNA_00700 0.13 +0.7 759,347 - CCNA_00700 0.13 -1.0 759,347 - CCNA_00700 0.13 +1.5 759,347 - CCNA_00700 0.13 +0.6 759,347 - CCNA_00700 0.13 +0.8 759,347 - CCNA_00700 0.13 +0.8 759,347 - CCNA_00700 0.13 -1.6 759,347 - CCNA_00700 0.13 -0.7 759,383 + CCNA_00700 0.15 -0.4 759,391 - CCNA_00700 0.15 -1.3 759,407 - CCNA_00700 0.16 +1.8 759,418 + CCNA_00700 0.17 -1.3 759,420 - CCNA_00700 0.17 +0.4 759,424 + CCNA_00700 0.17 -0.0 759,432 - CCNA_00700 0.17 +0.4 759,432 - CCNA_00700 0.17 +1.6 759,465 + CCNA_00700 0.19 +0.7 759,465 + CCNA_00700 0.19 +0.8 759,473 - CCNA_00700 0.19 -0.5 759,473 - CCNA_00700 0.19 -0.4 759,473 - CCNA_00700 0.19 +0.4 759,473 - CCNA_00700 0.19 -0.6 759,478 - CCNA_00700 0.20 +0.2 759,489 + CCNA_00700 0.20 -0.0 759,497 - CCNA_00700 0.21 -0.9 759,522 + CCNA_00700 0.22 +0.3 759,532 - CCNA_00700 0.22 +0.4 759,532 - CCNA_00700 0.22 +0.5 759,555 - CCNA_00700 0.24 +0.2 759,570 + CCNA_00700 0.24 +0.5 759,583 - CCNA_00700 0.25 +0.7 759,593 - CCNA_00700 0.26 +1.6 759,594 - CCNA_00700 0.26 +0.2 759,631 - CCNA_00700 0.28 -1.1 759,638 + CCNA_00700 0.28 +0.1 759,646 - CCNA_00700 0.28 +0.3 759,648 + CCNA_00700 0.29 +0.8 759,656 - CCNA_00700 0.29 -0.0 759,734 + CCNA_00700 0.33 +0.3 759,740 + CCNA_00700 0.33 +0.6 759,742 - CCNA_00700 0.33 +1.8 759,756 + CCNA_00700 0.34 -0.3 759,762 - CCNA_00700 0.34 +2.3 759,764 - CCNA_00700 0.35 +0.8 759,764 - CCNA_00700 0.35 +0.1 759,784 + CCNA_00700 0.36 +1.1 759,784 + CCNA_00700 0.36 -0.5 759,784 + CCNA_00700 0.36 -1.5 759,819 + CCNA_00700 0.37 +1.6 759,819 + CCNA_00700 0.37 +0.8 759,822 - CCNA_00700 0.38 +0.5 759,859 + CCNA_00700 0.39 -2.7 759,860 - CCNA_00700 0.40 -0.3 759,867 - CCNA_00700 0.40 +2.0 759,879 + CCNA_00700 0.40 -1.1 759,879 + +2.6 759,899 + CCNA_00700 0.42 -0.8 759,907 - CCNA_00700 0.42 +0.7 759,920 + CCNA_00700 0.43 -0.7 759,920 + CCNA_00700 0.43 +0.6 759,920 + CCNA_00700 0.43 +2.5 759,920 + CCNA_00700 0.43 +1.6 759,920 + CCNA_00700 0.43 -0.8 759,920 + CCNA_00700 0.43 -0.0 759,928 - CCNA_00700 0.43 +1.8 759,947 + CCNA_00700 0.44 +0.6 759,955 - CCNA_00700 0.44 -0.6 759,956 + CCNA_00700 0.44 +3.1 759,997 + CCNA_00700 0.47 -0.4 760,005 - CCNA_00700 0.47 -1.2 760,005 - CCNA_00700 0.47 +1.0 760,017 - CCNA_00700 0.48 +0.6 760,040 - CCNA_00700 0.49 +1.1 760,071 - CCNA_00700 0.50 -0.2 760,074 + CCNA_00700 0.51 +1.0 760,140 - CCNA_00700 0.54 -1.4 760,149 + CCNA_00700 0.55 -1.8 760,164 + CCNA_00700 0.55 +3.9 760,164 + CCNA_00700 0.55 +1.1 760,172 - CCNA_00700 0.56 +1.1 760,172 - CCNA_00700 0.56 -1.2 760,177 + CCNA_00700 0.56 +1.3 760,190 - CCNA_00700 0.57 +0.8 760,223 + CCNA_00700 0.58 -0.0 760,236 + +4.1 760,243 + CCNA_00700 0.59 +0.8 760,253 + CCNA_00700 0.60 -0.2 760,258 + CCNA_00700 0.60 -0.9 760,258 + CCNA_00700 0.60 +2.0 760,263 + CCNA_00700 0.60 -0.0 760,263 + CCNA_00700 0.60 +0.7 760,266 - CCNA_00700 0.61 -0.6 760,266 - CCNA_00700 0.61 -0.9 760,270 + CCNA_00700 0.61 +1.6 760,280 + CCNA_00700 0.61 +1.7 760,288 - CCNA_00700 0.62 +1.8 760,288 - CCNA_00700 0.62 -0.4 760,341 + CCNA_00700 0.64 -0.8 760,358 + CCNA_00700 0.65 -1.5 760,397 + CCNA_00700 0.67 +0.9 760,411 + CCNA_00700 0.68 -1.4 760,419 - CCNA_00700 0.69 +1.5 760,460 - CCNA_00700 0.71 -1.1 760,467 + CCNA_00700 0.71 -0.7 760,475 - CCNA_00700 0.71 -1.5 760,513 - +3.1 760,523 - CCNA_00700 0.74 -2.5 760,547 - CCNA_00700 0.75 +0.6 760,575 - CCNA_00700 0.77 -1.0 760,577 + CCNA_00700 0.77 -0.3 760,577 + CCNA_00700 0.77 +1.2 760,585 - CCNA_00700 0.77 +0.2 760,585 - CCNA_00700 0.77 +0.1 760,585 - CCNA_00700 0.77 +0.4 760,585 - CCNA_00700 0.77 +0.9 760,629 + CCNA_00700 0.79 -0.9 760,637 - CCNA_00700 0.80 +1.1 760,655 + CCNA_00700 0.81 -0.4 760,669 - CCNA_00700 0.82 +0.3 760,705 - CCNA_00700 0.83 -1.2 760,723 + CCNA_00700 0.84 -2.0 760,723 + CCNA_00700 0.84 -0.0 760,756 + CCNA_00700 0.86 +0.3 760,786 - CCNA_00700 0.88 +1.6 760,801 + CCNA_00700 0.88 +0.9 760,809 - CCNA_00700 0.89 +0.3 760,829 - CCNA_00700 0.90 -1.2 760,841 + +2.3 760,864 + +1.5 760,869 + +1.1 760,869 + +0.6 760,869 + +2.6 760,869 + +0.7 760,869 + +0.4 760,869 + +0.1 760,869 + +1.1 760,877 - +0.9 760,877 - -1.2 760,877 - -0.6 760,877 - -1.4 760,877 - +0.8 760,877 - +0.2 760,877 - +2.6 760,877 - +0.4 760,877 - +0.6 760,877 - +0.5 760,877 - +2.0 760,877 - -0.4 760,877 - +0.1 760,877 - -1.2 760,877 - +0.6 760,877 - -0.0 760,896 - +1.1 760,950 + -0.4 760,958 - -1.6 760,989 + +0.4 761,076 - +0.1 761,076 - +1.8 761,076 - +0.9 761,130 - +0.5 761,135 + +0.2 761,143 - -1.6 761,146 + +2.2 761,213 + -0.9 761,231 + +1.9 761,252 + -0.6 761,275 - +1.2 761,544 - +0.8 761,544 - +0.9 761,580 - +0.4 761,580 - -0.2 761,610 + +0.9 761,632 - CCNA_00701 0.10 +0.3 761,650 + CCNA_00701 0.19 -1.2 761,651 + CCNA_00701 0.19 -1.2 761,667 + CCNA_00701 0.27 +1.8 761,670 - CCNA_00701 0.28 +0.2 761,671 + CCNA_00701 0.29 +0.8 761,675 - CCNA_00701 0.30 -0.8 761,689 - CCNA_00701 0.37 -0.2 761,717 + CCNA_00701 0.50 +1.3 761,717 + +2.1 761,722 + CCNA_00701 0.53 -0.4 761,725 - CCNA_00701 0.54 +1.1 761,730 - CCNA_00701 0.57 +0.6 761,743 + CCNA_00701 0.63 +1.9 761,751 + CCNA_00701 0.67 +1.5 761,751 - CCNA_00701 0.67 +1.8 761,759 - CCNA_00701 0.70 +1.2 761,776 - CCNA_00701 0.79 +0.5 761,785 + CCNA_00701 0.83 +0.4 761,831 + +2.8 761,839 - +1.8 761,839 - -1.0 761,848 + +1.5 761,849 - +0.5 761,856 - -0.3 761,905 - -0.5 761,907 + -0.4 761,910 - -0.0 761,921 + +0.1 761,932 + +1.8 761,945 - +2.2
Or see this region's nucleotide sequence