Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00693

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00692 and CCNA_00693 are separated by 234 nucleotidesCCNA_00693 and CCNA_00694 overlap by 4 nucleotides CCNA_00692: CCNA_00692 - PAS-family GGDEF/EAL protein, at 749,166 to 751,250 _00692 CCNA_00693: CCNA_00693 - heat shock protein 15, at 751,485 to 751,778 _00693 CCNA_00694: CCNA_00694 - ATP-dependent DNA helicase, at 751,775 to 754,342 _00694 Position (kb) 751 752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 750.490 kb on + strand, within CCNA_00692at 750.490 kb on + strand, within CCNA_00692at 750.497 kb on - strand, within CCNA_00692at 750.498 kb on - strand, within CCNA_00692at 750.519 kb on + strand, within CCNA_00692at 750.545 kb on + strand, within CCNA_00692at 750.548 kb on - strand, within CCNA_00692at 750.580 kb on + strand, within CCNA_00692at 750.597 kb on + strand, within CCNA_00692at 750.597 kb on - strand, within CCNA_00692at 750.616 kb on + strand, within CCNA_00692at 750.616 kb on + strand, within CCNA_00692at 750.618 kb on - strand, within CCNA_00692at 750.621 kb on + strand, within CCNA_00692at 750.624 kb on - strand, within CCNA_00692at 750.624 kb on - strand, within CCNA_00692at 750.629 kb on - strand, within CCNA_00692at 750.634 kb on - strand, within CCNA_00692at 750.666 kb on + strand, within CCNA_00692at 750.679 kb on + strand, within CCNA_00692at 750.679 kb on + strand, within CCNA_00692at 750.679 kb on + strand, within CCNA_00692at 750.679 kb on + strand, within CCNA_00692at 750.687 kb on - strand, within CCNA_00692at 750.687 kb on - strand, within CCNA_00692at 750.730 kb on - strand, within CCNA_00692at 750.735 kb on - strand, within CCNA_00692at 750.778 kb on + strand, within CCNA_00692at 750.781 kb on - strand, within CCNA_00692at 750.783 kb on + strand, within CCNA_00692at 750.783 kb on + strand, within CCNA_00692at 750.783 kb on + strand, within CCNA_00692at 750.786 kb on - strand, within CCNA_00692at 750.791 kb on - strand, within CCNA_00692at 750.791 kb on - strand, within CCNA_00692at 750.791 kb on - strand, within CCNA_00692at 750.791 kb on - strand, within CCNA_00692at 750.843 kb on - strand, within CCNA_00692at 750.848 kb on - strand, within CCNA_00692at 750.862 kb on + strand, within CCNA_00692at 750.881 kb on + strand, within CCNA_00692at 750.889 kb on - strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strand, within CCNA_00692at 750.898 kb on + strandat 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.906 kb on - strand, within CCNA_00692at 750.911 kb on - strand, within CCNA_00692at 750.911 kb on - strand, within CCNA_00692at 750.916 kb on - strand, within CCNA_00692at 750.975 kb on + strand, within CCNA_00692at 750.975 kb on + strand, within CCNA_00692at 750.975 kb on + strand, within CCNA_00692at 750.975 kb on + strand, within CCNA_00692at 750.979 kb on + strand, within CCNA_00692at 750.983 kb on - strand, within CCNA_00692at 750.983 kb on - strand, within CCNA_00692at 750.987 kb on + strand, within CCNA_00692at 750.987 kb on - strand, within CCNA_00692at 750.987 kb on - strand, within CCNA_00692at 750.992 kb on - strand, within CCNA_00692at 751.012 kb on - strand, within CCNA_00692at 751.036 kb on + strand, within CCNA_00692at 751.049 kb on - strandat 751.056 kb on + strandat 751.063 kb on - strandat 751.064 kb on - strandat 751.064 kb on - strandat 751.093 kb on + strandat 751.109 kb on + strandat 751.150 kb on - strandat 751.150 kb on - strandat 751.150 kb on - strandat 751.158 kb on - strandat 751.165 kb on + strandat 751.175 kb on + strandat 751.175 kb on + strandat 751.175 kb on + strandat 751.175 kb on + strandat 751.183 kb on - strandat 751.183 kb on - strandat 751.183 kb on - strandat 751.183 kb on - strandat 751.183 kb on - strandat 751.183 kb on - strandat 751.188 kb on + strandat 751.190 kb on - strandat 751.217 kb on + strandat 751.270 kb on - strandat 751.285 kb on - strandat 751.374 kb on + strandat 751.391 kb on + strandat 751.414 kb on + strandat 751.414 kb on + strandat 751.414 kb on + strandat 751.414 kb on + strandat 751.414 kb on + strandat 751.414 kb on + strandat 751.417 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.422 kb on - strandat 751.433 kb on - strandat 751.433 kb on - strandat 751.437 kb on + strandat 751.457 kb on - strandat 751.461 kb on + strandat 751.461 kb on + strandat 751.461 kb on + strandat 751.461 kb on + strandat 751.461 kb on + strandat 751.469 kb on - strandat 751.469 kb on - strandat 751.469 kb on - strandat 751.493 kb on - strandat 751.495 kb on + strandat 751.495 kb on + strandat 751.495 kb on + strandat 751.503 kb on - strandat 751.503 kb on - strandat 751.553 kb on - strand, within CCNA_00693at 751.597 kb on + strand, within CCNA_00693at 751.653 kb on + strand, within CCNA_00693at 751.661 kb on - strand, within CCNA_00693at 751.662 kb on + strandat 751.733 kb on - strand, within CCNA_00693at 751.734 kb on - strand, within CCNA_00693at 751.747 kb on + strand, within CCNA_00693at 751.764 kb on + strandat 751.771 kb on + strandat 751.772 kb on - strandat 751.782 kb on - strandat 751.838 kb on - strandat 751.896 kb on + strandat 751.901 kb on + strandat 751.973 kb on - strandat 751.973 kb on - strandat 751.991 kb on + strandat 751.998 kb on - strandat 752.011 kb on - strandat 752.011 kb on - strandat 752.011 kb on - strandat 752.013 kb on - strandat 752.013 kb on - strandat 752.013 kb on - strandat 752.020 kb on + strandat 752.033 kb on + strand, within CCNA_00694at 752.057 kb on + strand, within CCNA_00694at 752.065 kb on - strand, within CCNA_00694at 752.065 kb on - strand, within CCNA_00694at 752.088 kb on + strand, within CCNA_00694at 752.090 kb on + strand, within CCNA_00694at 752.096 kb on - strand, within CCNA_00694at 752.101 kb on + strand, within CCNA_00694at 752.132 kb on + strand, within CCNA_00694at 752.132 kb on + strand, within CCNA_00694at 752.185 kb on + strand, within CCNA_00694at 752.195 kb on + strand, within CCNA_00694at 752.209 kb on - strand, within CCNA_00694at 752.266 kb on - strand, within CCNA_00694at 752.266 kb on - strand, within CCNA_00694at 752.266 kb on - strand, within CCNA_00694at 752.271 kb on + strand, within CCNA_00694at 752.291 kb on + strand, within CCNA_00694at 752.296 kb on + strand, within CCNA_00694at 752.318 kb on + strand, within CCNA_00694at 752.333 kb on - strand, within CCNA_00694at 752.351 kb on + strand, within CCNA_00694at 752.395 kb on - strand, within CCNA_00694at 752.581 kb on - strand, within CCNA_00694at 752.639 kb on + strand, within CCNA_00694at 752.639 kb on + strand, within CCNA_00694at 752.665 kb on + strand, within CCNA_00694at 752.673 kb on - strand, within CCNA_00694at 752.688 kb on + strand, within CCNA_00694at 752.698 kb on + strand, within CCNA_00694at 752.742 kb on + strand, within CCNA_00694at 752.750 kb on - strand, within CCNA_00694at 752.754 kb on + strand, within CCNA_00694at 752.755 kb on - strand, within CCNA_00694at 752.778 kb on + strand, within CCNA_00694at 752.778 kb on + strand, within CCNA_00694at 752.778 kb on + strand, within CCNA_00694

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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750,490 + CCNA_00692 0.64 +0.4
750,490 + CCNA_00692 0.64 +1.6
750,497 - CCNA_00692 0.64 +1.8
750,498 - CCNA_00692 0.64 +0.7
750,519 + CCNA_00692 0.65 +0.3
750,545 + CCNA_00692 0.66 +0.1
750,548 - CCNA_00692 0.66 -1.3
750,580 + CCNA_00692 0.68 +0.0
750,597 + CCNA_00692 0.69 -0.0
750,597 - CCNA_00692 0.69 +1.4
750,616 + CCNA_00692 0.70 +0.8
750,616 + CCNA_00692 0.70 +0.5
750,618 - CCNA_00692 0.70 -0.0
750,621 + CCNA_00692 0.70 -0.1
750,624 - CCNA_00692 0.70 -0.6
750,624 - CCNA_00692 0.70 -0.6
750,629 - CCNA_00692 0.70 -1.0
750,634 - CCNA_00692 0.70 +0.4
750,666 + CCNA_00692 0.72 +0.4
750,679 + CCNA_00692 0.73 -0.5
750,679 + CCNA_00692 0.73 +0.2
750,679 + CCNA_00692 0.73 +0.2
750,679 + CCNA_00692 0.73 +0.8
750,687 - CCNA_00692 0.73 -0.3
750,687 - CCNA_00692 0.73 +1.9
750,730 - CCNA_00692 0.75 +1.0
750,735 - CCNA_00692 0.75 -0.3
750,778 + CCNA_00692 0.77 +0.8
750,781 - CCNA_00692 0.77 +2.0
750,783 + CCNA_00692 0.78 +0.2
750,783 + CCNA_00692 0.78 +0.0
750,783 + CCNA_00692 0.78 -0.1
750,786 - CCNA_00692 0.78 +0.4
750,791 - CCNA_00692 0.78 +0.4
750,791 - CCNA_00692 0.78 -0.1
750,791 - CCNA_00692 0.78 -1.1
750,791 - CCNA_00692 0.78 -2.1
750,843 - CCNA_00692 0.80 -0.6
750,848 - CCNA_00692 0.81 +0.4
750,862 + CCNA_00692 0.81 -1.7
750,881 + CCNA_00692 0.82 +0.6
750,889 - CCNA_00692 0.83 +0.6
750,898 + CCNA_00692 0.83 -0.3
750,898 + CCNA_00692 0.83 +0.0
750,898 + CCNA_00692 0.83 -1.4
750,898 + CCNA_00692 0.83 -0.5
750,898 + CCNA_00692 0.83 -0.3
750,898 + CCNA_00692 0.83 +0.4
750,898 + CCNA_00692 0.83 +0.6
750,898 + CCNA_00692 0.83 +1.3
750,898 + +2.3
750,906 - CCNA_00692 0.83 -0.3
750,906 - CCNA_00692 0.83 -0.2
750,906 - CCNA_00692 0.83 -0.4
750,906 - CCNA_00692 0.83 +1.3
750,906 - CCNA_00692 0.83 -0.2
750,906 - CCNA_00692 0.83 -0.9
750,906 - CCNA_00692 0.83 +0.6
750,906 - CCNA_00692 0.83 -0.7
750,906 - CCNA_00692 0.83 -2.1
750,911 - CCNA_00692 0.84 +1.3
750,911 - CCNA_00692 0.84 +2.0
750,916 - CCNA_00692 0.84 +0.8
750,975 + CCNA_00692 0.87 +2.0
750,975 + CCNA_00692 0.87 -1.0
750,975 + CCNA_00692 0.87 +2.0
750,975 + CCNA_00692 0.87 -1.6
750,979 + CCNA_00692 0.87 +0.9
750,983 - CCNA_00692 0.87 -0.3
750,983 - CCNA_00692 0.87 -2.3
750,987 + CCNA_00692 0.87 +0.7
750,987 - CCNA_00692 0.87 +1.6
750,987 - CCNA_00692 0.87 +0.7
750,992 - CCNA_00692 0.88 -0.5
751,012 - CCNA_00692 0.89 +1.0
751,036 + CCNA_00692 0.90 +0.8
751,049 - +1.4
751,056 + +2.5
751,063 - +0.5
751,064 - +1.9
751,064 - -1.1
751,093 + +0.7
751,109 + -1.5
751,150 - -1.5
751,150 - +1.6
751,150 - +2.0
751,158 - +0.2
751,165 + -0.1
751,175 + +0.1
751,175 + +1.9
751,175 + +1.2
751,175 + -1.4
751,183 - +0.6
751,183 - +0.4
751,183 - +0.4
751,183 - +1.3
751,183 - -0.0
751,183 - +0.7
751,188 + +0.7
751,190 - -0.5
751,217 + +0.5
751,270 - +1.6
751,285 - -1.9
751,374 + +0.8
751,391 + +1.0
751,414 + +1.9
751,414 + -2.6
751,414 + -1.9
751,414 + +0.1
751,414 + +1.4
751,414 + -1.1
751,417 - +1.6
751,422 - +0.9
751,422 - -0.0
751,422 - -1.6
751,422 - +0.9
751,422 - +1.0
751,422 - +0.9
751,422 - +0.0
751,422 - -0.2
751,433 - +2.1
751,433 - +2.7
751,437 + +2.4
751,457 - +0.2
751,461 + -1.7
751,461 + -0.2
751,461 + -1.1
751,461 + +0.9
751,461 + +1.2
751,469 - +1.6
751,469 - +1.4
751,469 - +0.8
751,493 - +0.5
751,495 + +0.5
751,495 + -0.1
751,495 + +3.5
751,503 - +1.4
751,503 - +2.6
751,553 - CCNA_00693 0.23 +3.3
751,597 + CCNA_00693 0.38 +0.9
751,653 + CCNA_00693 0.57 +0.4
751,661 - CCNA_00693 0.60 +2.3
751,662 + +2.0
751,733 - CCNA_00693 0.84 +2.2
751,734 - CCNA_00693 0.85 +1.5
751,747 + CCNA_00693 0.89 +0.6
751,764 + +0.5
751,771 + +0.8
751,772 - +2.0
751,782 - +2.4
751,838 - +2.3
751,896 + +1.6
751,901 + +1.8
751,973 - +1.4
751,973 - +0.6
751,991 + +0.4
751,998 - -0.8
752,011 - +0.4
752,011 - -0.1
752,011 - +1.5
752,013 - -0.0
752,013 - +1.0
752,013 - -0.2
752,020 + -0.3
752,033 + CCNA_00694 0.10 +0.0
752,057 + CCNA_00694 0.11 +1.6
752,065 - CCNA_00694 0.11 +2.8
752,065 - CCNA_00694 0.11 -0.3
752,088 + CCNA_00694 0.12 +2.0
752,090 + CCNA_00694 0.12 +1.4
752,096 - CCNA_00694 0.12 +0.3
752,101 + CCNA_00694 0.13 -1.0
752,132 + CCNA_00694 0.14 -0.4
752,132 + CCNA_00694 0.14 +2.6
752,185 + CCNA_00694 0.16 +2.6
752,195 + CCNA_00694 0.16 +0.3
752,209 - CCNA_00694 0.17 +0.9
752,266 - CCNA_00694 0.19 +0.9
752,266 - CCNA_00694 0.19 -1.1
752,266 - CCNA_00694 0.19 +0.6
752,271 + CCNA_00694 0.19 +0.6
752,291 + CCNA_00694 0.20 -0.7
752,296 + CCNA_00694 0.20 -0.1
752,318 + CCNA_00694 0.21 +0.5
752,333 - CCNA_00694 0.22 +0.8
752,351 + CCNA_00694 0.22 -0.2
752,395 - CCNA_00694 0.24 +0.6
752,581 - CCNA_00694 0.31 +1.8
752,639 + CCNA_00694 0.34 -1.9
752,639 + CCNA_00694 0.34 -0.0
752,665 + CCNA_00694 0.35 +0.4
752,673 - CCNA_00694 0.35 +2.3
752,688 + CCNA_00694 0.36 -0.3
752,698 + CCNA_00694 0.36 +0.9
752,742 + CCNA_00694 0.38 -1.0
752,750 - CCNA_00694 0.38 +0.9
752,754 + CCNA_00694 0.38 -0.8
752,755 - CCNA_00694 0.38 +2.0
752,778 + CCNA_00694 0.39 +0.2
752,778 + CCNA_00694 0.39 +1.6
752,778 + CCNA_00694 0.39 +0.9

Or see this region's nucleotide sequence