Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00674

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00673 and CCNA_00674 are separated by 98 nucleotidesCCNA_00674 and CCNA_00675 overlap by 35 nucleotidesCCNA_00675 and CCNA_00676 overlap by 1 nucleotidesCCNA_00676 and CCNA_00677 are separated by 147 nucleotides CCNA_00673: CCNA_00673 - AraC-family transcriptional regulator, at 730,781 to 731,788 _00673 CCNA_00674: CCNA_00674 - NAD(FAD)-utilizing dehydrogenase, at 731,887 to 733,134 _00674 CCNA_00675: CCNA_00675 - VapC-like PIN domain ribonuclease, at 733,100 to 733,495 _00675 CCNA_00676: CCNA_00676 - PSK-family transcription factor, at 733,495 to 733,734 _00676 CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571 _00677 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 730.902 kb on + strand, within CCNA_00673at 730.929 kb on + strand, within CCNA_00673at 730.937 kb on - strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.961 kb on - strand, within CCNA_00673at 731.007 kb on + strand, within CCNA_00673at 731.025 kb on - strand, within CCNA_00673at 731.067 kb on + strand, within CCNA_00673at 731.081 kb on - strand, within CCNA_00673at 731.116 kb on + strand, within CCNA_00673at 731.124 kb on - strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.197 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.209 kb on + strand, within CCNA_00673at 731.219 kb on + strand, within CCNA_00673at 731.233 kb on + strand, within CCNA_00673at 731.279 kb on - strand, within CCNA_00673at 731.315 kb on + strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.349 kb on + strand, within CCNA_00673at 731.367 kb on - strand, within CCNA_00673at 731.424 kb on - strand, within CCNA_00673at 731.482 kb on - strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.561 kb on + strand, within CCNA_00673at 731.577 kb on + strand, within CCNA_00673at 731.585 kb on - strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.616 kb on - strand, within CCNA_00673at 731.617 kb on - strand, within CCNA_00673at 731.622 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.654 kb on + strand, within CCNA_00673at 731.662 kb on - strand, within CCNA_00673at 731.698 kb on + strandat 731.750 kb on - strandat 731.750 kb on - strandat 731.754 kb on + strandat 731.762 kb on - strandat 731.764 kb on - strandat 731.774 kb on - strandat 731.776 kb on + strandat 731.786 kb on - strandat 731.884 kb on + strandat 731.892 kb on - strandat 731.897 kb on - strandat 731.949 kb on - strandat 731.972 kb on + strandat 731.972 kb on + strandat 731.972 kb on + strandat 732.029 kb on - strand, within CCNA_00674at 732.092 kb on - strand, within CCNA_00674at 732.097 kb on - strand, within CCNA_00674at 732.113 kb on + strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.161 kb on - strand, within CCNA_00674at 732.162 kb on - strand, within CCNA_00674at 732.240 kb on - strand, within CCNA_00674at 732.305 kb on - strand, within CCNA_00674at 732.317 kb on - strand, within CCNA_00674at 732.352 kb on - strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.388 kb on + strand, within CCNA_00674at 732.440 kb on - strand, within CCNA_00674at 732.512 kb on + strand, within CCNA_00674at 732.536 kb on - strand, within CCNA_00674at 732.574 kb on + strand, within CCNA_00674at 732.580 kb on - strand, within CCNA_00674at 732.586 kb on - strand, within CCNA_00674at 732.611 kb on - strand, within CCNA_00674at 732.642 kb on + strand, within CCNA_00674at 732.656 kb on - strand, within CCNA_00674at 732.676 kb on + strand, within CCNA_00674at 732.685 kb on + strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.721 kb on - strand, within CCNA_00674at 732.723 kb on - strand, within CCNA_00674at 732.756 kb on - strand, within CCNA_00674at 732.799 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.808 kb on + strand, within CCNA_00674at 732.840 kb on - strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.841 kb on + strand, within CCNA_00674at 732.843 kb on + strand, within CCNA_00674at 732.849 kb on - strand, within CCNA_00674at 732.921 kb on - strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.936 kb on + strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.944 kb on - strand, within CCNA_00674at 732.987 kb on - strand, within CCNA_00674at 733.016 kb on + strandat 733.016 kb on + strandat 733.024 kb on - strandat 733.024 kb on - strandat 733.024 kb on - strandat 733.092 kb on - strandat 733.106 kb on - strandat 733.129 kb on + strandat 733.138 kb on - strandat 733.140 kb on + strand, within CCNA_00675at 733.145 kb on - strand, within CCNA_00675at 733.170 kb on + strand, within CCNA_00675at 733.197 kb on + strand, within CCNA_00675at 733.197 kb on + strand, within CCNA_00675at 733.202 kb on - strand, within CCNA_00675at 733.214 kb on + strand, within CCNA_00675at 733.222 kb on - strand, within CCNA_00675at 733.282 kb on - strand, within CCNA_00675at 733.288 kb on + strand, within CCNA_00675at 733.296 kb on + strand, within CCNA_00675at 733.296 kb on + strand, within CCNA_00675at 733.304 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.309 kb on - strand, within CCNA_00675at 733.340 kb on - strand, within CCNA_00675at 733.366 kb on + strand, within CCNA_00675at 733.444 kb on - strand, within CCNA_00675at 733.451 kb on - strand, within CCNA_00675at 733.488 kb on + strandat 733.491 kb on - strandat 733.534 kb on + strand, within CCNA_00676at 733.542 kb on - strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strandat 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.607 kb on + strand, within CCNA_00676at 733.615 kb on - strand, within CCNA_00676at 733.637 kb on - strand, within CCNA_00676at 733.652 kb on - strand, within CCNA_00676at 733.757 kb on + strandat 733.787 kb on + strandat 733.792 kb on + strandat 733.825 kb on + strandat 733.828 kb on - strandat 733.855 kb on - strandat 733.863 kb on - strandat 733.915 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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730,902 + CCNA_00673 0.12 +0.2
730,929 + CCNA_00673 0.15 -0.4
730,937 - CCNA_00673 0.15 +0.1
730,952 + CCNA_00673 0.17 +2.0
730,952 + CCNA_00673 0.17 +0.5
730,952 + CCNA_00673 0.17 +0.5
730,952 + CCNA_00673 0.17 +1.0
730,952 + CCNA_00673 0.17 +0.4
730,960 - CCNA_00673 0.18 +1.6
730,960 - CCNA_00673 0.18 +1.7
730,960 - CCNA_00673 0.18 +1.0
730,960 - CCNA_00673 0.18 -1.0
730,960 - CCNA_00673 0.18 +0.2
730,960 - CCNA_00673 0.18 +0.6
730,960 - CCNA_00673 0.18 +0.4
730,960 - CCNA_00673 0.18 +0.9
730,961 - CCNA_00673 0.18 -0.5
731,007 + CCNA_00673 0.22 +1.4
731,025 - CCNA_00673 0.24 +0.5
731,067 + CCNA_00673 0.28 +0.0
731,081 - CCNA_00673 0.30 +0.3
731,116 + CCNA_00673 0.33 +0.3
731,124 - CCNA_00673 0.34 +0.6
731,188 + CCNA_00673 0.40 -0.4
731,188 + CCNA_00673 0.40 +2.0
731,196 - CCNA_00673 0.41 -0.4
731,196 - CCNA_00673 0.41 -1.3
731,197 - CCNA_00673 0.41 +1.0
731,207 - CCNA_00673 0.42 +0.1
731,207 - CCNA_00673 0.42 -1.1
731,209 + CCNA_00673 0.42 -1.2
731,219 + CCNA_00673 0.43 +0.0
731,233 + CCNA_00673 0.45 +0.2
731,279 - CCNA_00673 0.49 -0.0
731,315 + CCNA_00673 0.53 -0.8
731,347 - CCNA_00673 0.56 -0.6
731,347 - CCNA_00673 0.56 -1.7
731,349 + CCNA_00673 0.56 +2.6
731,367 - CCNA_00673 0.58 +0.9
731,424 - CCNA_00673 0.64 +0.7
731,482 - CCNA_00673 0.70 +1.0
731,497 + CCNA_00673 0.71 +2.0
731,497 + CCNA_00673 0.71 +2.0
731,497 + CCNA_00673 0.71 -1.8
731,497 + CCNA_00673 0.71 +0.2
731,561 + CCNA_00673 0.77 +1.0
731,577 + CCNA_00673 0.79 -0.2
731,585 - CCNA_00673 0.80 +0.3
731,596 + CCNA_00673 0.81 -0.0
731,596 + CCNA_00673 0.81 +2.4
731,596 + CCNA_00673 0.81 -0.3
731,596 + CCNA_00673 0.81 +1.2
731,596 + CCNA_00673 0.81 -0.3
731,604 - CCNA_00673 0.82 +1.6
731,604 - CCNA_00673 0.82 -0.4
731,604 - CCNA_00673 0.82 +0.9
731,604 - CCNA_00673 0.82 +0.1
731,604 - CCNA_00673 0.82 +2.0
731,604 - CCNA_00673 0.82 +0.7
731,604 - CCNA_00673 0.82 +0.9
731,616 - CCNA_00673 0.83 +1.0
731,617 - CCNA_00673 0.83 +2.0
731,622 + CCNA_00673 0.83 -0.8
731,627 + CCNA_00673 0.84 -0.7
731,627 + CCNA_00673 0.84 -1.6
731,654 + CCNA_00673 0.87 +1.1
731,662 - CCNA_00673 0.87 -0.5
731,698 + +0.1
731,750 - -0.2
731,750 - +0.2
731,754 + +2.0
731,762 - +1.7
731,764 - +0.5
731,774 - +0.8
731,776 + +0.4
731,786 - -0.8
731,884 + -0.0
731,892 - +1.2
731,897 - +0.9
731,949 - +2.2
731,972 + -0.2
731,972 + -1.0
731,972 + +0.4
732,029 - CCNA_00674 0.11 +3.7
732,092 - CCNA_00674 0.16 +1.0
732,097 - CCNA_00674 0.17 +2.2
732,113 + CCNA_00674 0.18 -1.2
732,121 - CCNA_00674 0.19 +1.9
732,121 - CCNA_00674 0.19 +3.2
732,153 + CCNA_00674 0.21 +0.2
732,161 - CCNA_00674 0.22 +2.3
732,162 - CCNA_00674 0.22 -0.5
732,240 - CCNA_00674 0.28 +0.7
732,305 - CCNA_00674 0.33 +1.0
732,317 - CCNA_00674 0.34 +0.8
732,352 - CCNA_00674 0.37 +1.0
732,355 + CCNA_00674 0.38 -0.3
732,355 + CCNA_00674 0.38 -0.8
732,355 + CCNA_00674 0.38 -1.4
732,388 + CCNA_00674 0.40 -0.6
732,440 - CCNA_00674 0.44 +2.0
732,512 + CCNA_00674 0.50 -1.9
732,536 - CCNA_00674 0.52 -0.5
732,574 + CCNA_00674 0.55 -1.4
732,580 - CCNA_00674 0.56 +2.2
732,586 - CCNA_00674 0.56 +2.2
732,611 - CCNA_00674 0.58 +0.3
732,642 + CCNA_00674 0.60 -0.0
732,656 - CCNA_00674 0.62 +1.2
732,676 + CCNA_00674 0.63 +0.2
732,685 + CCNA_00674 0.64 +0.6
732,693 - CCNA_00674 0.65 +0.6
732,693 - CCNA_00674 0.65 +1.2
732,721 - CCNA_00674 0.67 +1.2
732,723 - CCNA_00674 0.67 +1.2
732,756 - CCNA_00674 0.70 +1.6
732,799 + CCNA_00674 0.73 +0.3
732,808 + CCNA_00674 0.74 -0.7
732,808 + CCNA_00674 0.74 -0.7
732,840 - CCNA_00674 0.76 +2.2
732,841 + CCNA_00674 0.76 +0.5
732,841 + CCNA_00674 0.76 +0.2
732,843 + CCNA_00674 0.77 -0.8
732,849 - CCNA_00674 0.77 +2.3
732,921 - CCNA_00674 0.83 +0.6
732,936 + CCNA_00674 0.84 -0.6
732,936 + CCNA_00674 0.84 -0.6
732,936 + CCNA_00674 0.84 +0.6
732,944 - CCNA_00674 0.85 +1.3
732,944 - CCNA_00674 0.85 +2.2
732,944 - CCNA_00674 0.85 +1.3
732,944 - CCNA_00674 0.85 +2.1
732,987 - CCNA_00674 0.88 +2.8
733,016 + +0.8
733,016 + +0.1
733,024 - +0.4
733,024 - +2.0
733,024 - +1.2
733,092 - +1.4
733,106 - +2.6
733,129 + +2.6
733,138 - +2.9
733,140 + CCNA_00675 0.10 +0.3
733,145 - CCNA_00675 0.11 +2.9
733,170 + CCNA_00675 0.18 -0.9
733,197 + CCNA_00675 0.24 -0.3
733,197 + CCNA_00675 0.24 +0.7
733,202 - CCNA_00675 0.26 +1.0
733,214 + CCNA_00675 0.29 +1.4
733,222 - CCNA_00675 0.31 +2.6
733,282 - CCNA_00675 0.46 +2.7
733,288 + CCNA_00675 0.47 +1.6
733,296 + CCNA_00675 0.49 +0.7
733,296 + CCNA_00675 0.49 +0.6
733,304 - CCNA_00675 0.52 +2.4
733,309 - CCNA_00675 0.53 +2.4
733,309 - CCNA_00675 0.53 +3.0
733,309 - CCNA_00675 0.53 +2.9
733,309 - CCNA_00675 0.53 +3.1
733,309 - CCNA_00675 0.53 +1.4
733,340 - CCNA_00675 0.61 +3.7
733,366 + CCNA_00675 0.67 +1.1
733,444 - CCNA_00675 0.87 +1.8
733,451 - CCNA_00675 0.89 +3.6
733,488 + +0.6
733,491 - +1.5
733,534 + CCNA_00676 0.16 +1.4
733,542 - CCNA_00676 0.20 +2.7
733,607 + CCNA_00676 0.47 +1.1
733,607 + +1.1
733,607 + CCNA_00676 0.47 -0.8
733,607 + CCNA_00676 0.47 +0.1
733,607 + CCNA_00676 0.47 -0.3
733,615 - CCNA_00676 0.50 +1.9
733,637 - CCNA_00676 0.59 +0.9
733,652 - CCNA_00676 0.65 +2.6
733,757 + -2.4
733,787 + -1.7
733,792 + -1.2
733,825 + +0.6
733,828 - +4.2
733,855 - +4.6
733,863 - +3.9
733,915 - +4.5

Or see this region's nucleotide sequence