Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00665

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00664 and CCNA_00665 are separated by 167 nucleotidesCCNA_00665 and CCNA_00666 overlap by 4 nucleotidesCCNA_00666 and CCNA_00667 are separated by 61 nucleotides CCNA_00664: CCNA_00664 - C4-dicarboxylate transport protein, at 720,528 to 721,781 _00664 CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094 _00665 CCNA_00666: CCNA_00666 - response regulator receiver domain protein, at 723,091 to 723,444 _00666 CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 Position (kb) 721 722 723 724Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 721.032 kb on + strand, within CCNA_00664at 721.052 kb on - strand, within CCNA_00664at 721.052 kb on - strand, within CCNA_00664at 721.101 kb on + strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.130 kb on - strand, within CCNA_00664at 721.150 kb on + strand, within CCNA_00664at 721.169 kb on + strand, within CCNA_00664at 721.197 kb on - strand, within CCNA_00664at 721.211 kb on + strand, within CCNA_00664at 721.251 kb on - strand, within CCNA_00664at 721.275 kb on + strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.315 kb on + strand, within CCNA_00664at 721.318 kb on + strand, within CCNA_00664at 721.318 kb on + strand, within CCNA_00664at 721.358 kb on - strand, within CCNA_00664at 721.382 kb on + strand, within CCNA_00664at 721.404 kb on + strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664at 721.433 kb on + strand, within CCNA_00664at 721.443 kb on + strand, within CCNA_00664at 721.443 kb on + strand, within CCNA_00664at 721.446 kb on - strand, within CCNA_00664at 721.451 kb on - strand, within CCNA_00664at 721.451 kb on - strand, within CCNA_00664at 721.457 kb on + strand, within CCNA_00664at 721.457 kb on + strand, within CCNA_00664at 721.459 kb on + strand, within CCNA_00664at 721.478 kb on - strand, within CCNA_00664at 721.486 kb on - strand, within CCNA_00664at 721.502 kb on - strand, within CCNA_00664at 721.552 kb on + strand, within CCNA_00664at 721.567 kb on + strand, within CCNA_00664at 721.567 kb on + strand, within CCNA_00664at 721.571 kb on - strand, within CCNA_00664at 721.592 kb on - strand, within CCNA_00664at 721.624 kb on + strand, within CCNA_00664at 721.646 kb on + strand, within CCNA_00664at 721.646 kb on + strand, within CCNA_00664at 721.646 kb on + strand, within CCNA_00664at 721.654 kb on - strand, within CCNA_00664at 721.654 kb on - strand, within CCNA_00664at 721.654 kb on - strand, within CCNA_00664at 721.654 kb on - strand, within CCNA_00664at 721.654 kb on - strand, within CCNA_00664at 721.682 kb on + strandat 721.690 kb on - strandat 721.717 kb on + strandat 721.753 kb on - strandat 721.755 kb on - strandat 721.774 kb on - strandat 721.805 kb on - strandat 721.829 kb on - strandat 721.846 kb on + strandat 721.846 kb on + strandat 721.861 kb on + strandat 721.890 kb on - strandat 721.939 kb on + strandat 721.957 kb on - strandat 721.957 kb on - strandat 721.968 kb on + strandat 722.071 kb on - strand, within CCNA_00665at 722.129 kb on + strand, within CCNA_00665at 722.132 kb on - strand, within CCNA_00665at 722.134 kb on + strand, within CCNA_00665at 722.170 kb on - strand, within CCNA_00665at 722.176 kb on + strand, within CCNA_00665at 722.177 kb on + strand, within CCNA_00665at 722.200 kb on + strandat 722.208 kb on - strand, within CCNA_00665at 722.208 kb on - strand, within CCNA_00665at 722.244 kb on + strand, within CCNA_00665at 722.244 kb on + strand, within CCNA_00665at 722.252 kb on - strand, within CCNA_00665at 722.252 kb on - strand, within CCNA_00665at 722.272 kb on + strand, within CCNA_00665at 722.295 kb on + strand, within CCNA_00665at 722.359 kb on + strand, within CCNA_00665at 722.406 kb on - strand, within CCNA_00665at 722.407 kb on + strand, within CCNA_00665at 722.407 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.475 kb on + strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.574 kb on - strand, within CCNA_00665at 722.600 kb on - strandat 722.618 kb on - strand, within CCNA_00665at 722.618 kb on - strand, within CCNA_00665at 722.633 kb on + strand, within CCNA_00665at 722.659 kb on + strand, within CCNA_00665at 722.682 kb on + strand, within CCNA_00665at 722.699 kb on + strand, within CCNA_00665at 722.738 kb on + strand, within CCNA_00665at 722.745 kb on - strand, within CCNA_00665at 722.785 kb on + strand, within CCNA_00665at 722.791 kb on - strand, within CCNA_00665at 722.796 kb on + strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.881 kb on + strand, within CCNA_00665at 722.903 kb on + strand, within CCNA_00665at 722.918 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.936 kb on - strand, within CCNA_00665at 722.961 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 723.019 kb on + strandat 723.019 kb on + strandat 723.025 kb on - strandat 723.041 kb on - strandat 723.090 kb on + strandat 723.090 kb on + strandat 723.098 kb on - strandat 723.134 kb on - strand, within CCNA_00666at 723.144 kb on + strand, within CCNA_00666at 723.145 kb on + strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.169 kb on - strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.173 kb on - strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.211 kb on - strand, within CCNA_00666at 723.216 kb on - strand, within CCNA_00666at 723.235 kb on - strand, within CCNA_00666at 723.250 kb on + strand, within CCNA_00666at 723.258 kb on + strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.293 kb on + strand, within CCNA_00666at 723.327 kb on - strand, within CCNA_00666at 723.361 kb on + strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.381 kb on - strand, within CCNA_00666at 723.384 kb on + strand, within CCNA_00666at 723.411 kb on + strandat 723.419 kb on - strandat 723.466 kb on - strandat 723.476 kb on - strandat 723.478 kb on + strandat 723.486 kb on - strandat 723.486 kb on - strandat 723.584 kb on + strandat 723.631 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.671 kb on + strand, within CCNA_00667at 723.691 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.768 kb on + strand, within CCNA_00667at 723.781 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.792 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.879 kb on - strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.994 kb on - strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.035 kb on + strand, within CCNA_00667

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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721,032 + CCNA_00664 0.40 +1.0
721,052 - CCNA_00664 0.42 +0.6
721,052 - CCNA_00664 0.42 +1.0
721,101 + CCNA_00664 0.46 -0.2
721,109 - CCNA_00664 0.46 -1.2
721,109 - CCNA_00664 0.46 +0.3
721,109 - CCNA_00664 0.46 -0.3
721,130 - CCNA_00664 0.48 +0.0
721,150 + CCNA_00664 0.50 +1.5
721,169 + CCNA_00664 0.51 +0.6
721,197 - CCNA_00664 0.53 +1.4
721,211 + CCNA_00664 0.54 +0.8
721,251 - CCNA_00664 0.58 -0.9
721,275 + CCNA_00664 0.60 +0.5
721,292 + CCNA_00664 0.61 +2.4
721,292 + CCNA_00664 0.61 -1.3
721,300 - CCNA_00664 0.62 -0.4
721,300 - CCNA_00664 0.62 +0.2
721,300 - CCNA_00664 0.62 +0.5
721,315 + CCNA_00664 0.63 +0.4
721,318 + CCNA_00664 0.63 +1.0
721,318 + CCNA_00664 0.63 -0.4
721,358 - CCNA_00664 0.66 +0.3
721,382 + CCNA_00664 0.68 -0.4
721,404 + CCNA_00664 0.70 -0.9
721,412 - CCNA_00664 0.70 -0.8
721,412 - CCNA_00664 0.70 +1.4
721,433 + CCNA_00664 0.72 +1.5
721,443 + CCNA_00664 0.73 +0.7
721,443 + CCNA_00664 0.73 +0.9
721,446 - CCNA_00664 0.73 -0.2
721,451 - CCNA_00664 0.74 +1.6
721,451 - CCNA_00664 0.74 -0.2
721,457 + CCNA_00664 0.74 +0.7
721,457 + CCNA_00664 0.74 -0.9
721,459 + CCNA_00664 0.74 +1.3
721,478 - CCNA_00664 0.76 +0.0
721,486 - CCNA_00664 0.76 +2.0
721,502 - CCNA_00664 0.78 -0.1
721,552 + CCNA_00664 0.82 -1.0
721,567 + CCNA_00664 0.83 -0.4
721,567 + CCNA_00664 0.83 -0.1
721,571 - CCNA_00664 0.83 +0.8
721,592 - CCNA_00664 0.85 +0.5
721,624 + CCNA_00664 0.87 -1.1
721,646 + CCNA_00664 0.89 +1.1
721,646 + CCNA_00664 0.89 +0.5
721,646 + CCNA_00664 0.89 -1.9
721,654 - CCNA_00664 0.90 -0.3
721,654 - CCNA_00664 0.90 -0.6
721,654 - CCNA_00664 0.90 -0.1
721,654 - CCNA_00664 0.90 +0.4
721,654 - CCNA_00664 0.90 -0.8
721,682 + -0.6
721,690 - -0.9
721,717 + +1.7
721,753 - -1.8
721,755 - +1.1
721,774 - -1.3
721,805 - +0.0
721,829 - +2.2
721,846 + -1.1
721,846 + +0.2
721,861 + -0.3
721,890 - +1.0
721,939 + +0.2
721,957 - -0.8
721,957 - -0.8
721,968 + +1.0
722,071 - CCNA_00665 0.11 -0.0
722,129 + CCNA_00665 0.16 -0.3
722,132 - CCNA_00665 0.16 +2.0
722,134 + CCNA_00665 0.16 -0.1
722,170 - CCNA_00665 0.19 +0.8
722,176 + CCNA_00665 0.20 -1.5
722,177 + CCNA_00665 0.20 +0.4
722,200 + +3.6
722,208 - CCNA_00665 0.23 +1.2
722,208 - CCNA_00665 0.23 +0.3
722,244 + CCNA_00665 0.26 +2.8
722,244 + CCNA_00665 0.26 +1.6
722,252 - CCNA_00665 0.26 +0.7
722,252 - CCNA_00665 0.26 +1.0
722,272 + CCNA_00665 0.28 +1.1
722,295 + CCNA_00665 0.30 -1.4
722,359 + CCNA_00665 0.36 +1.2
722,406 - CCNA_00665 0.40 +0.6
722,407 + CCNA_00665 0.40 +0.0
722,407 + CCNA_00665 0.40 +0.6
722,435 + CCNA_00665 0.42 +1.7
722,435 + CCNA_00665 0.42 +0.3
722,435 + CCNA_00665 0.42 +2.4
722,435 + CCNA_00665 0.42 +0.4
722,435 + CCNA_00665 0.42 +1.1
722,435 + CCNA_00665 0.42 +0.0
722,437 - CCNA_00665 0.43 -1.3
722,437 - CCNA_00665 0.43 -0.6
722,437 - CCNA_00665 0.43 +0.0
722,443 - CCNA_00665 0.43 +0.8
722,443 - CCNA_00665 0.43 +2.6
722,443 - CCNA_00665 0.43 -1.6
722,475 + CCNA_00665 0.46 +0.3
722,513 - CCNA_00665 0.49 -0.2
722,513 - CCNA_00665 0.49 +0.9
722,513 - CCNA_00665 0.49 +1.6
722,556 + CCNA_00665 0.53 +2.6
722,556 + CCNA_00665 0.53 +0.4
722,574 - CCNA_00665 0.55 +0.8
722,600 - +3.6
722,618 - CCNA_00665 0.58 -0.4
722,618 - CCNA_00665 0.58 -0.5
722,633 + CCNA_00665 0.60 +0.3
722,659 + CCNA_00665 0.62 +1.9
722,682 + CCNA_00665 0.64 +0.0
722,699 + CCNA_00665 0.65 +1.1
722,738 + CCNA_00665 0.69 -0.3
722,745 - CCNA_00665 0.69 +0.3
722,785 + CCNA_00665 0.73 +0.0
722,791 - CCNA_00665 0.73 -0.4
722,796 + CCNA_00665 0.74 -0.7
722,841 - CCNA_00665 0.78 +1.8
722,841 - CCNA_00665 0.78 -0.2
722,843 + CCNA_00665 0.78 +0.7
722,851 - CCNA_00665 0.79 +0.6
722,851 - CCNA_00665 0.79 +1.4
722,851 - CCNA_00665 0.79 -1.4
722,881 + CCNA_00665 0.81 +1.8
722,903 + CCNA_00665 0.83 +1.7
722,918 + CCNA_00665 0.85 +1.1
722,923 + CCNA_00665 0.85 +0.9
722,923 + CCNA_00665 0.85 -1.0
722,931 - CCNA_00665 0.86 -1.9
722,931 - CCNA_00665 0.86 -0.0
722,936 - CCNA_00665 0.86 -1.8
722,961 + CCNA_00665 0.88 +0.9
722,967 + CCNA_00665 0.89 +0.1
722,967 + CCNA_00665 0.89 +1.3
723,019 + -0.5
723,019 + +0.9
723,025 - -0.1
723,041 - +0.0
723,090 + +0.1
723,090 + +0.9
723,098 - +2.4
723,134 - CCNA_00666 0.12 -0.1
723,144 + CCNA_00666 0.15 +0.7
723,145 + CCNA_00666 0.15 +1.3
723,153 - CCNA_00666 0.18 -0.3
723,153 - CCNA_00666 0.18 -1.3
723,153 - CCNA_00666 0.18 -0.9
723,163 + CCNA_00666 0.20 +1.7
723,163 + CCNA_00666 0.20 +0.6
723,169 - CCNA_00666 0.22 -0.0
723,170 + CCNA_00666 0.22 +1.6
723,173 - CCNA_00666 0.23 -0.4
723,178 - CCNA_00666 0.25 +1.6
723,208 + CCNA_00666 0.33 +0.3
723,208 + CCNA_00666 0.33 -0.5
723,211 - CCNA_00666 0.34 +1.2
723,216 - CCNA_00666 0.35 +0.6
723,235 - CCNA_00666 0.41 -0.0
723,250 + CCNA_00666 0.45 +0.0
723,258 + CCNA_00666 0.47 +1.8
723,258 - CCNA_00666 0.47 +4.1
723,258 - CCNA_00666 0.47 +4.1
723,258 - CCNA_00666 0.47 +4.5
723,293 + CCNA_00666 0.57 -0.0
723,327 - CCNA_00666 0.67 +1.2
723,361 + CCNA_00666 0.76 -0.7
723,369 - CCNA_00666 0.79 -0.8
723,369 - CCNA_00666 0.79 +0.2
723,369 - CCNA_00666 0.79 +2.1
723,369 - CCNA_00666 0.79 +1.0
723,381 - CCNA_00666 0.82 +2.6
723,384 + CCNA_00666 0.83 -1.1
723,411 + +1.3
723,419 - +2.7
723,466 - +1.9
723,476 - +0.2
723,478 + -0.0
723,486 - +2.0
723,486 - -0.3
723,584 + +1.0
723,631 - CCNA_00667 0.11 -0.2
723,635 - CCNA_00667 0.11 -0.6
723,635 - CCNA_00667 0.11 +0.5
723,671 + CCNA_00667 0.14 +1.2
723,691 - CCNA_00667 0.16 -0.3
723,755 - CCNA_00667 0.21 +0.6
723,755 - CCNA_00667 0.21 -1.6
723,768 + CCNA_00667 0.22 +0.4
723,781 - CCNA_00667 0.23 +0.0
723,788 - CCNA_00667 0.24 +0.6
723,788 - CCNA_00667 0.24 +0.2
723,792 + CCNA_00667 0.24 +0.3
723,797 + CCNA_00667 0.25 -0.6
723,797 + CCNA_00667 0.25 -0.5
723,805 - CCNA_00667 0.25 +0.6
723,805 - CCNA_00667 0.25 -0.4
723,805 - CCNA_00667 0.25 -1.0
723,879 - CCNA_00667 0.31 +0.6
723,889 + CCNA_00667 0.32 +1.5
723,897 - CCNA_00667 0.33 -1.0
723,897 - CCNA_00667 0.33 +0.7
723,950 + CCNA_00667 0.37 +1.4
723,950 + CCNA_00667 0.37 +1.0
723,950 + CCNA_00667 0.37 -1.1
723,958 - CCNA_00667 0.38 +1.4
723,958 - CCNA_00667 0.38 +1.2
723,958 - CCNA_00667 0.38 -0.4
723,994 - CCNA_00667 0.41 -1.2
724,016 + CCNA_00667 0.43 +1.4
724,035 + CCNA_00667 0.45 -1.0

Or see this region's nucleotide sequence