Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00660

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00659 and CCNA_00660 overlap by 4 nucleotidesCCNA_00660 and CCNA_00661 overlap by 4 nucleotidesCCNA_00661 and CCNA_00662 overlap by 17 nucleotidesCCNA_00662 and CCNA_00663 are separated by 43 nucleotides CCNA_00659: CCNA_00659 - type I restriction-modification system restriction subunit, at 714,931 to 717,825 _00659 CCNA_00660: CCNA_00660 - transposase, at 717,822 to 718,802 _00660 CCNA_00661: CCNA_00661 - transposase, HTH-Tnp1 superfamily, at 718,799 to 719,233 _00661 CCNA_00662: CCNA_00662 - hypothetical protein, at 719,217 to 719,564 _00662 CCNA_00663: CCNA_00663 - bacterial apoptosis endonuclease BapE, at 719,608 to 719,943 _00663 Position (kb) 717 718 719Strain fitness (log2 ratio) -2 -1 0 1 2 3at 716.825 kb on - strand, within CCNA_00659at 716.825 kb on - strand, within CCNA_00659at 716.827 kb on + strand, within CCNA_00659at 716.852 kb on + strand, within CCNA_00659at 716.857 kb on + strand, within CCNA_00659at 716.860 kb on - strand, within CCNA_00659at 716.886 kb on + strand, within CCNA_00659at 716.928 kb on + strand, within CCNA_00659at 716.928 kb on + strand, within CCNA_00659at 716.936 kb on - strand, within CCNA_00659at 716.946 kb on - strand, within CCNA_00659at 716.971 kb on - strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.001 kb on + strand, within CCNA_00659at 717.009 kb on - strand, within CCNA_00659at 717.009 kb on - strand, within CCNA_00659at 717.011 kb on + strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.016 kb on + strand, within CCNA_00659at 717.019 kb on - strand, within CCNA_00659at 717.019 kb on - strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.024 kb on - strand, within CCNA_00659at 717.026 kb on + strand, within CCNA_00659at 717.029 kb on - strand, within CCNA_00659at 717.074 kb on + strand, within CCNA_00659at 717.102 kb on - strand, within CCNA_00659at 717.108 kb on + strand, within CCNA_00659at 717.123 kb on + strand, within CCNA_00659at 717.131 kb on - strand, within CCNA_00659at 717.140 kb on + strand, within CCNA_00659at 717.152 kb on + strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.160 kb on - strand, within CCNA_00659at 717.234 kb on + strand, within CCNA_00659at 717.234 kb on + strand, within CCNA_00659at 717.242 kb on - strand, within CCNA_00659at 717.242 kb on - strand, within CCNA_00659at 717.261 kb on - strand, within CCNA_00659at 717.261 kb on - strand, within CCNA_00659at 717.292 kb on + strand, within CCNA_00659at 717.308 kb on + strand, within CCNA_00659at 717.313 kb on + strand, within CCNA_00659at 717.326 kb on - strand, within CCNA_00659at 717.337 kb on + strand, within CCNA_00659at 717.344 kb on - strand, within CCNA_00659at 717.345 kb on - strand, within CCNA_00659at 717.385 kb on + strand, within CCNA_00659at 717.385 kb on + strand, within CCNA_00659at 717.386 kb on + strand, within CCNA_00659at 717.386 kb on + strand, within CCNA_00659at 717.386 kb on + strand, within CCNA_00659at 717.386 kb on - strandat 717.386 kb on - strand, within CCNA_00659at 717.396 kb on + strand, within CCNA_00659at 717.396 kb on + strand, within CCNA_00659at 717.404 kb on - strand, within CCNA_00659at 717.404 kb on - strand, within CCNA_00659at 717.435 kb on - strand, within CCNA_00659at 717.513 kb on + strand, within CCNA_00659at 717.536 kb on - strandat 717.538 kb on + strandat 717.539 kb on + strandat 717.539 kb on + strandat 717.539 kb on + strandat 717.539 kb on + strandat 717.539 kb on + strandat 717.542 kb on - strandat 717.547 kb on - strandat 717.547 kb on - strandat 717.547 kb on - strandat 717.547 kb on - strandat 717.547 kb on - strandat 717.547 kb on - strandat 717.558 kb on + strandat 717.566 kb on - strandat 717.590 kb on - strandat 717.590 kb on - strandat 717.603 kb on + strandat 717.623 kb on + strandat 717.623 kb on + strandat 717.630 kb on + strandat 717.631 kb on - strandat 717.638 kb on - strandat 717.651 kb on - strandat 717.651 kb on - strandat 717.666 kb on + strandat 719.214 kb on + strandat 719.291 kb on + strand, within CCNA_00662at 719.291 kb on + strand, within CCNA_00662at 719.297 kb on + strand, within CCNA_00662at 719.299 kb on - strand, within CCNA_00662at 719.299 kb on - strand, within CCNA_00662at 719.305 kb on - strand, within CCNA_00662at 719.310 kb on + strand, within CCNA_00662at 719.310 kb on + strand, within CCNA_00662at 719.310 kb on + strand, within CCNA_00662at 719.318 kb on - strand, within CCNA_00662at 719.318 kb on - strand, within CCNA_00662at 719.318 kb on - strand, within CCNA_00662at 719.373 kb on - strand, within CCNA_00662at 719.378 kb on + strand, within CCNA_00662at 719.396 kb on - strand, within CCNA_00662at 719.396 kb on - strand, within CCNA_00662at 719.408 kb on - strand, within CCNA_00662at 719.417 kb on + strand, within CCNA_00662at 719.448 kb on + strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.484 kb on - strand, within CCNA_00662at 719.487 kb on + strand, within CCNA_00662at 719.506 kb on + strand, within CCNA_00662at 719.509 kb on - strand, within CCNA_00662at 719.572 kb on - strandat 719.592 kb on + strandat 719.604 kb on - strandat 719.605 kb on + strandat 719.638 kb on - strandat 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.668 kb on - strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.703 kb on - strand, within CCNA_00663at 719.703 kb on - strand, within CCNA_00663at 719.721 kb on - strand, within CCNA_00663at 719.721 kb on - strand, within CCNA_00663at 719.743 kb on - strand, within CCNA_00663at 719.744 kb on - strand, within CCNA_00663at 719.746 kb on - strand, within CCNA_00663at 719.775 kb on + strand, within CCNA_00663at 719.790 kb on - strand, within CCNA_00663at 719.799 kb on - strand, within CCNA_00663

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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716,825 - CCNA_00659 0.65 -0.6
716,825 - CCNA_00659 0.65 +0.6
716,827 + CCNA_00659 0.65 -0.9
716,852 + CCNA_00659 0.66 -0.6
716,857 + CCNA_00659 0.67 +1.5
716,860 - CCNA_00659 0.67 +1.4
716,886 + CCNA_00659 0.68 -2.1
716,928 + CCNA_00659 0.69 +0.3
716,928 + CCNA_00659 0.69 -0.0
716,936 - CCNA_00659 0.69 +2.2
716,946 - CCNA_00659 0.70 -0.4
716,971 - CCNA_00659 0.70 -1.6
717,001 + CCNA_00659 0.72 +0.7
717,001 + CCNA_00659 0.72 -1.6
717,001 + CCNA_00659 0.72 +0.4
717,009 - CCNA_00659 0.72 +0.4
717,009 - CCNA_00659 0.72 -0.2
717,011 + CCNA_00659 0.72 -0.4
717,016 + CCNA_00659 0.72 +1.6
717,016 + CCNA_00659 0.72 +1.1
717,016 + CCNA_00659 0.72 +2.5
717,016 + CCNA_00659 0.72 -0.1
717,019 - CCNA_00659 0.72 -0.6
717,019 - CCNA_00659 0.72 -0.0
717,024 - CCNA_00659 0.72 -0.7
717,024 - CCNA_00659 0.72 +1.7
717,024 - CCNA_00659 0.72 +0.9
717,026 + CCNA_00659 0.72 -0.1
717,029 - CCNA_00659 0.72 +0.6
717,074 + CCNA_00659 0.74 +1.9
717,102 - CCNA_00659 0.75 +1.0
717,108 + CCNA_00659 0.75 +0.6
717,123 + CCNA_00659 0.76 +0.9
717,131 - CCNA_00659 0.76 +3.0
717,140 + CCNA_00659 0.76 -1.1
717,152 + CCNA_00659 0.77 +1.1
717,160 - CCNA_00659 0.77 +0.5
717,160 - CCNA_00659 0.77 +0.4
717,160 - CCNA_00659 0.77 +1.1
717,234 + CCNA_00659 0.80 +2.7
717,234 + CCNA_00659 0.80 +1.8
717,242 - CCNA_00659 0.80 +0.6
717,242 - CCNA_00659 0.80 -0.3
717,261 - CCNA_00659 0.80 -0.5
717,261 - CCNA_00659 0.80 +2.2
717,292 + CCNA_00659 0.82 +0.2
717,308 + CCNA_00659 0.82 -1.2
717,313 + CCNA_00659 0.82 +0.2
717,326 - CCNA_00659 0.83 +0.3
717,337 + CCNA_00659 0.83 +1.5
717,344 - CCNA_00659 0.83 -0.3
717,345 - CCNA_00659 0.83 -0.3
717,385 + CCNA_00659 0.85 -0.4
717,385 + CCNA_00659 0.85 +0.6
717,386 + CCNA_00659 0.85 -0.4
717,386 + CCNA_00659 0.85 +0.3
717,386 + CCNA_00659 0.85 +1.4
717,386 - +3.0
717,386 - CCNA_00659 0.85 +1.5
717,396 + CCNA_00659 0.85 +1.5
717,396 + CCNA_00659 0.85 -1.1
717,404 - CCNA_00659 0.85 -1.1
717,404 - CCNA_00659 0.85 +0.7
717,435 - CCNA_00659 0.86 +0.0
717,513 + CCNA_00659 0.89 +0.6
717,536 - -0.4
717,538 + +1.3
717,539 + +3.0
717,539 + -1.3
717,539 + -0.7
717,539 + -0.9
717,539 + +0.7
717,542 - +0.9
717,547 - +0.1
717,547 - +1.1
717,547 - +0.2
717,547 - +1.6
717,547 - +2.0
717,547 - -0.8
717,558 + -0.4
717,566 - +1.4
717,590 - -0.1
717,590 - +0.6
717,603 + -0.7
717,623 + +0.6
717,623 + -1.4
717,630 + +0.9
717,631 - -0.3
717,638 - +3.0
717,651 - +0.3
717,651 - -1.3
717,666 + -2.0
719,214 + +0.3
719,291 + CCNA_00662 0.21 +1.0
719,291 + CCNA_00662 0.21 +0.0
719,297 + CCNA_00662 0.23 +0.2
719,299 - CCNA_00662 0.24 +0.8
719,299 - CCNA_00662 0.24 +1.7
719,305 - CCNA_00662 0.25 +1.4
719,310 + CCNA_00662 0.27 +1.6
719,310 + CCNA_00662 0.27 -0.0
719,310 + CCNA_00662 0.27 +1.6
719,318 - CCNA_00662 0.29 +0.8
719,318 - CCNA_00662 0.29 +1.6
719,318 - CCNA_00662 0.29 +0.4
719,373 - CCNA_00662 0.45 +2.5
719,378 + CCNA_00662 0.46 -0.6
719,396 - CCNA_00662 0.51 +0.5
719,396 - CCNA_00662 0.51 +0.7
719,408 - CCNA_00662 0.55 +2.3
719,417 + CCNA_00662 0.57 +1.1
719,448 + CCNA_00662 0.66 -0.1
719,456 - CCNA_00662 0.69 +0.9
719,484 - CCNA_00662 0.77 +0.3
719,487 + CCNA_00662 0.78 -0.4
719,506 + CCNA_00662 0.83 -0.4
719,509 - CCNA_00662 0.84 +0.0
719,572 - +1.6
719,592 + +1.7
719,604 - -1.1
719,605 + +0.0
719,638 - +1.7
719,655 + CCNA_00663 0.14 +2.7
719,655 + CCNA_00663 0.14 +0.0
719,655 + CCNA_00663 0.14 +0.2
719,655 + CCNA_00663 0.14 +3.6
719,660 + CCNA_00663 0.15 +0.6
719,663 - CCNA_00663 0.16 -2.5
719,663 - CCNA_00663 0.16 -0.2
719,668 - CCNA_00663 0.18 +0.5
719,695 + CCNA_00663 0.26 +2.0
719,695 + CCNA_00663 0.26 +1.4
719,703 - CCNA_00663 0.28 +2.6
719,703 - CCNA_00663 0.28 +0.8
719,721 - CCNA_00663 0.34 -0.4
719,721 - CCNA_00663 0.34 +0.1
719,743 - CCNA_00663 0.40 +0.8
719,744 - CCNA_00663 0.40 +0.2
719,746 - CCNA_00663 0.41 +1.1
719,775 + CCNA_00663 0.50 +2.2
719,790 - CCNA_00663 0.54 -0.9
719,799 - CCNA_00663 0.57 -1.1

Or see this region's nucleotide sequence