Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00653 and CCNA_00654 overlap by 11 nucleotides CCNA_00654 and CCNA_00655 are separated by 288 nucleotides
CCNA_00653: CCNA_00653 - Nitrate reductase (EC 1.7.99.4) <small>(from data)</small>, at 704,586 to 707,264
_00653
CCNA_00654: CCNA_00654 - uroporphyrin-III C-methyltransferase, at 707,254 to 708,039
_00654
CCNA_00655: CCNA_00655 - hypothetical protein, at 708,328 to 710,310
_00655
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 706.340 kb on + strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.346 kb on - strand, within CCNA_00653 at 706.348 kb on - strand, within CCNA_00653 at 706.382 kb on - strand, within CCNA_00653 at 706.382 kb on - strand, within CCNA_00653 at 706.387 kb on - strand, within CCNA_00653 at 706.406 kb on + strand, within CCNA_00653 at 706.414 kb on - strand, within CCNA_00653 at 706.424 kb on + strand, within CCNA_00653 at 706.484 kb on + strand, within CCNA_00653 at 706.484 kb on + strand, within CCNA_00653 at 706.487 kb on - strand, within CCNA_00653 at 706.487 kb on - strand, within CCNA_00653 at 706.490 kb on + strand, within CCNA_00653 at 706.490 kb on + strand, within CCNA_00653 at 706.492 kb on - strand, within CCNA_00653 at 706.525 kb on - strand, within CCNA_00653 at 706.559 kb on + strand, within CCNA_00653 at 706.559 kb on + strand, within CCNA_00653 at 706.567 kb on - strand, within CCNA_00653 at 706.567 kb on - strand, within CCNA_00653 at 706.579 kb on - strand, within CCNA_00653 at 706.610 kb on + strand, within CCNA_00653 at 706.611 kb on + strand, within CCNA_00653 at 706.612 kb on - strand, within CCNA_00653 at 706.612 kb on - strand at 706.632 kb on + strand, within CCNA_00653 at 706.639 kb on + strand, within CCNA_00653 at 706.647 kb on - strand, within CCNA_00653 at 706.649 kb on + strand, within CCNA_00653 at 706.655 kb on + strand, within CCNA_00653 at 706.662 kb on - strand, within CCNA_00653 at 706.671 kb on + strand, within CCNA_00653 at 706.676 kb on + strand, within CCNA_00653 at 706.696 kb on + strand, within CCNA_00653 at 706.704 kb on + strand, within CCNA_00653 at 706.731 kb on - strand, within CCNA_00653 at 706.771 kb on - strand, within CCNA_00653 at 706.847 kb on - strand, within CCNA_00653 at 706.901 kb on + strand, within CCNA_00653 at 706.908 kb on + strand, within CCNA_00653 at 706.916 kb on - strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.921 kb on + strand, within CCNA_00653 at 706.929 kb on - strand, within CCNA_00653 at 706.929 kb on - strand, within CCNA_00653 at 706.946 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 706.951 kb on - strand, within CCNA_00653 at 707.028 kb on + strand at 707.028 kb on + strand at 707.028 kb on + strand at 707.078 kb on + strand at 707.083 kb on + strand at 707.096 kb on + strand at 707.097 kb on - strand at 707.097 kb on - strand at 707.097 kb on - strand at 707.183 kb on - strand at 707.197 kb on + strand at 707.202 kb on + strand at 707.210 kb on - strand at 707.248 kb on + strand at 707.256 kb on + strand at 707.258 kb on + strand at 707.264 kb on - strand at 707.266 kb on - strand at 707.283 kb on - strand at 707.288 kb on - strand at 707.292 kb on - strand at 707.305 kb on + strand at 707.326 kb on + strand at 707.342 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.344 kb on + strand, within CCNA_00654 at 707.346 kb on + strand, within CCNA_00654 at 707.352 kb on + strand, within CCNA_00654 at 707.352 kb on - strand, within CCNA_00654 at 707.352 kb on - strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on + strand, within CCNA_00654 at 707.362 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.370 kb on - strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.381 kb on + strand, within CCNA_00654 at 707.387 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.389 kb on - strand, within CCNA_00654 at 707.432 kb on - strand, within CCNA_00654 at 707.454 kb on - strand, within CCNA_00654 at 707.506 kb on + strand, within CCNA_00654 at 707.529 kb on + strand, within CCNA_00654 at 707.577 kb on + strand, within CCNA_00654 at 707.585 kb on - strand, within CCNA_00654 at 707.641 kb on + strand, within CCNA_00654 at 707.666 kb on + strand, within CCNA_00654 at 707.679 kb on - strand, within CCNA_00654 at 707.689 kb on + strand, within CCNA_00654 at 707.699 kb on - strand, within CCNA_00654 at 707.706 kb on + strand, within CCNA_00654 at 707.733 kb on - strand, within CCNA_00654 at 707.736 kb on + strand, within CCNA_00654 at 707.755 kb on + strand, within CCNA_00654 at 707.780 kb on - strand, within CCNA_00654 at 707.822 kb on - strand, within CCNA_00654 at 707.843 kb on - strand, within CCNA_00654 at 707.881 kb on + strand, within CCNA_00654 at 707.884 kb on - strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand at 707.912 kb on + strand, within CCNA_00654 at 707.912 kb on + strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.920 kb on - strand, within CCNA_00654 at 707.930 kb on - strand, within CCNA_00654 at 707.934 kb on + strand, within CCNA_00654 at 707.942 kb on - strand, within CCNA_00654 at 707.944 kb on - strand, within CCNA_00654 at 708.006 kb on - strand at 708.041 kb on - strand at 708.048 kb on - strand at 708.055 kb on + strand at 708.081 kb on - strand at 708.162 kb on + strand at 708.162 kb on + strand at 708.171 kb on - strand at 708.178 kb on + strand at 708.191 kb on - strand at 708.200 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.202 kb on + strand at 708.210 kb on - strand at 708.210 kb on - strand at 708.250 kb on - strand at 708.262 kb on + strand at 708.262 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.269 kb on + strand at 708.275 kb on - strand at 708.277 kb on - strand at 708.279 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.301 kb on + strand at 708.309 kb on - strand at 708.309 kb on - strand at 708.309 kb on - strand at 708.320 kb on + strand at 708.326 kb on + strand at 708.326 kb on + strand at 708.326 kb on + strand at 708.334 kb on - strand at 708.337 kb on + strand at 708.357 kb on - strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.427 kb on + strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.435 kb on - strand at 708.517 kb on - strand at 708.531 kb on + strand, within CCNA_00655 at 708.534 kb on - strand, within CCNA_00655 at 708.556 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.601 kb on - strand, within CCNA_00655 at 708.713 kb on - strand, within CCNA_00655 at 708.944 kb on - strand, within CCNA_00655 at 708.945 kb on + strand, within CCNA_00655 at 708.948 kb on - strand, within CCNA_00655 at 709.016 kb on - strand, within CCNA_00655
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 706,340 + CCNA_00653 0.65 +2.4 706,346 - CCNA_00653 0.66 +1.1 706,346 - CCNA_00653 0.66 +0.6 706,346 - CCNA_00653 0.66 -0.0 706,348 - CCNA_00653 0.66 -0.1 706,382 - CCNA_00653 0.67 +0.9 706,382 - CCNA_00653 0.67 +1.1 706,387 - CCNA_00653 0.67 +2.2 706,406 + CCNA_00653 0.68 +1.2 706,414 - CCNA_00653 0.68 -1.1 706,424 + CCNA_00653 0.69 +0.7 706,484 + CCNA_00653 0.71 +1.9 706,484 + CCNA_00653 0.71 -0.8 706,487 - CCNA_00653 0.71 +0.6 706,487 - CCNA_00653 0.71 +0.5 706,490 + CCNA_00653 0.71 +1.2 706,490 + CCNA_00653 0.71 +1.7 706,492 - CCNA_00653 0.71 -0.1 706,525 - CCNA_00653 0.72 +0.2 706,559 + CCNA_00653 0.74 +0.9 706,559 + CCNA_00653 0.74 +1.1 706,567 - CCNA_00653 0.74 +2.2 706,567 - CCNA_00653 0.74 +0.9 706,579 - CCNA_00653 0.74 +1.5 706,610 + CCNA_00653 0.76 +1.7 706,611 + CCNA_00653 0.76 +0.3 706,612 - CCNA_00653 0.76 +0.5 706,612 - +1.5 706,632 + CCNA_00653 0.76 -1.5 706,639 + CCNA_00653 0.77 +0.9 706,647 - CCNA_00653 0.77 -0.1 706,649 + CCNA_00653 0.77 +1.5 706,655 + CCNA_00653 0.77 +0.8 706,662 - CCNA_00653 0.77 +0.1 706,671 + CCNA_00653 0.78 +3.5 706,676 + CCNA_00653 0.78 +1.5 706,696 + CCNA_00653 0.79 +0.1 706,704 + CCNA_00653 0.79 -0.7 706,731 - CCNA_00653 0.80 +0.1 706,771 - CCNA_00653 0.82 +2.2 706,847 - CCNA_00653 0.84 +1.4 706,901 + CCNA_00653 0.86 -0.2 706,908 + CCNA_00653 0.87 -0.8 706,916 - CCNA_00653 0.87 -0.2 706,921 + CCNA_00653 0.87 +1.1 706,921 + CCNA_00653 0.87 +0.4 706,921 + CCNA_00653 0.87 -1.5 706,929 - CCNA_00653 0.87 -0.7 706,929 - CCNA_00653 0.87 +3.0 706,946 - CCNA_00653 0.88 -1.1 706,951 - CCNA_00653 0.88 -0.3 706,951 - CCNA_00653 0.88 -1.6 706,951 - CCNA_00653 0.88 -0.0 707,028 + -0.1 707,028 + -0.9 707,028 + +1.2 707,078 + +0.3 707,083 + +0.7 707,096 + -1.5 707,097 - -0.3 707,097 - +1.1 707,097 - +1.7 707,183 - +0.5 707,197 + +1.5 707,202 + -1.8 707,210 - -0.5 707,248 + +1.4 707,256 + +1.5 707,258 + -1.6 707,264 - -1.4 707,266 - +0.6 707,283 - +0.4 707,288 - +0.7 707,292 - +0.4 707,305 + -0.1 707,326 + +1.0 707,342 + CCNA_00654 0.11 -0.8 707,344 + CCNA_00654 0.11 +0.5 707,344 + CCNA_00654 0.11 -0.3 707,344 + CCNA_00654 0.11 -1.4 707,344 + CCNA_00654 0.11 -1.4 707,344 + CCNA_00654 0.11 -1.5 707,344 + CCNA_00654 0.11 -0.5 707,346 + CCNA_00654 0.12 +1.0 707,352 + CCNA_00654 0.12 +1.0 707,352 - CCNA_00654 0.12 +2.2 707,352 - CCNA_00654 0.12 +2.2 707,362 + CCNA_00654 0.14 +0.5 707,362 + CCNA_00654 0.14 -0.7 707,362 + CCNA_00654 0.14 -1.2 707,362 + CCNA_00654 0.14 -0.3 707,362 + CCNA_00654 0.14 -0.4 707,362 + CCNA_00654 0.14 +1.2 707,362 + CCNA_00654 0.14 +0.3 707,362 + CCNA_00654 0.14 -0.3 707,362 + CCNA_00654 0.14 +0.5 707,362 + CCNA_00654 0.14 +0.2 707,362 + CCNA_00654 0.14 +1.0 707,362 + CCNA_00654 0.14 +1.2 707,362 + CCNA_00654 0.14 -0.5 707,362 - CCNA_00654 0.14 -0.0 707,370 - CCNA_00654 0.15 +4.0 707,370 - CCNA_00654 0.15 +2.0 707,370 - CCNA_00654 0.15 +0.1 707,370 - CCNA_00654 0.15 -0.6 707,370 - CCNA_00654 0.15 +0.7 707,370 - CCNA_00654 0.15 +0.4 707,370 - CCNA_00654 0.15 -2.2 707,370 - CCNA_00654 0.15 -0.2 707,370 - CCNA_00654 0.15 -0.6 707,381 + CCNA_00654 0.16 -0.6 707,381 + CCNA_00654 0.16 +1.1 707,381 + CCNA_00654 0.16 +1.1 707,381 + CCNA_00654 0.16 +0.7 707,387 - CCNA_00654 0.17 +0.2 707,389 - CCNA_00654 0.17 -0.4 707,389 - CCNA_00654 0.17 +2.2 707,389 - CCNA_00654 0.17 -0.1 707,432 - CCNA_00654 0.23 -0.3 707,454 - CCNA_00654 0.25 -0.9 707,506 + CCNA_00654 0.32 -0.6 707,529 + CCNA_00654 0.35 +0.5 707,577 + CCNA_00654 0.41 -1.0 707,585 - CCNA_00654 0.42 -0.6 707,641 + CCNA_00654 0.49 -0.5 707,666 + CCNA_00654 0.52 -1.4 707,679 - CCNA_00654 0.54 +1.2 707,689 + CCNA_00654 0.55 -0.5 707,699 - CCNA_00654 0.57 -2.4 707,706 + CCNA_00654 0.58 -0.6 707,733 - CCNA_00654 0.61 -0.5 707,736 + CCNA_00654 0.61 -1.0 707,755 + CCNA_00654 0.64 -0.4 707,780 - CCNA_00654 0.67 +1.4 707,822 - CCNA_00654 0.72 -0.6 707,843 - CCNA_00654 0.75 +0.1 707,881 + CCNA_00654 0.80 +0.8 707,884 - CCNA_00654 0.80 +0.4 707,912 + CCNA_00654 0.84 -0.6 707,912 + CCNA_00654 0.84 +1.1 707,912 + CCNA_00654 0.84 +1.5 707,912 + CCNA_00654 0.84 +0.4 707,912 + +3.5 707,912 + CCNA_00654 0.84 +1.4 707,912 + CCNA_00654 0.84 +0.7 707,920 - CCNA_00654 0.85 -0.5 707,920 - CCNA_00654 0.85 -1.1 707,920 - CCNA_00654 0.85 -1.1 707,920 - CCNA_00654 0.85 -1.0 707,920 - CCNA_00654 0.85 +0.7 707,920 - CCNA_00654 0.85 +2.0 707,920 - CCNA_00654 0.85 -0.8 707,930 - CCNA_00654 0.86 +1.1 707,934 + CCNA_00654 0.87 +0.0 707,942 - CCNA_00654 0.88 -1.5 707,944 - CCNA_00654 0.88 +0.3 708,006 - +0.6 708,041 - -1.5 708,048 - +0.1 708,055 + -1.4 708,081 - -0.0 708,162 + +1.0 708,162 + -0.5 708,171 - -0.2 708,178 + +1.4 708,191 - -1.3 708,200 + +3.2 708,202 + -0.3 708,202 + +1.1 708,202 + +1.2 708,202 + +2.1 708,202 + +0.6 708,202 + +0.1 708,202 + +1.7 708,202 + -1.5 708,202 + -0.6 708,210 - +0.4 708,210 - +0.6 708,250 - +0.4 708,262 + +0.7 708,262 + +1.2 708,269 + +0.3 708,269 + +2.4 708,269 + +1.7 708,269 + -0.7 708,275 - +0.7 708,277 - +2.5 708,279 + +0.4 708,301 + +0.8 708,301 + -0.2 708,301 + +0.0 708,301 + +0.4 708,301 + +1.3 708,301 + -0.0 708,301 + +2.6 708,309 - -1.5 708,309 - +0.7 708,309 - +1.7 708,320 + -0.2 708,326 + +0.3 708,326 + -0.3 708,326 + -0.3 708,334 - -0.1 708,337 + -0.3 708,357 - -0.2 708,427 + +1.2 708,427 + -0.7 708,427 + -0.2 708,427 + -0.8 708,427 + +1.7 708,435 - +1.7 708,435 - -1.0 708,435 - +2.2 708,435 - -0.3 708,517 - +3.0 708,531 + CCNA_00655 0.10 +0.5 708,534 - CCNA_00655 0.10 -0.3 708,556 - CCNA_00655 0.11 +1.7 708,601 - CCNA_00655 0.14 +1.4 708,601 - CCNA_00655 0.14 +2.0 708,601 - CCNA_00655 0.14 +0.8 708,601 - CCNA_00655 0.14 +1.5 708,713 - CCNA_00655 0.19 +1.2 708,944 - CCNA_00655 0.31 -1.8 708,945 + CCNA_00655 0.31 -0.4 708,948 - CCNA_00655 0.31 +0.2 709,016 - CCNA_00655 0.35 -0.6
Or see this region's nucleotide sequence