Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00630 and CCNA_00631 overlap by 4 nucleotides CCNA_00631 and CCNA_00632 overlap by 4 nucleotides CCNA_00632 and CCNA_00633 overlap by 4 nucleotides
CCNA_00630: CCNA_00630 - chemotaxis histidine kinase protein cheAII, at 676,286 to 678,580
_00630
CCNA_00631: CCNA_00631 - chemotaxis protein cheW, at 678,577 to 679,029
_00631
CCNA_00632: CCNA_00632 - chemotaxis receiver domain protein CheYII, at 679,026 to 679,394
_00632
CCNA_00633: CCNA_00633 - receiver domain-glutamate methylesterase CheBII, at 679,391 to 680,467
_00633
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 678.113 kb on + strand, within CCNA_00630 at 678.142 kb on + strand, within CCNA_00630 at 678.163 kb on + strand, within CCNA_00630 at 678.181 kb on - strand, within CCNA_00630 at 678.220 kb on + strand, within CCNA_00630 at 678.243 kb on + strand, within CCNA_00630 at 678.244 kb on - strand, within CCNA_00630 at 678.315 kb on - strand, within CCNA_00630 at 678.316 kb on - strand, within CCNA_00630 at 678.325 kb on - strand, within CCNA_00630 at 678.349 kb on - strand, within CCNA_00630 at 678.361 kb on + strand at 678.361 kb on + strand at 678.369 kb on - strand at 678.369 kb on - strand at 678.399 kb on - strand at 678.403 kb on + strand at 678.411 kb on - strand at 678.415 kb on + strand at 678.423 kb on - strand at 678.448 kb on + strand at 678.448 kb on + strand at 678.469 kb on - strand at 678.469 kb on - strand at 678.495 kb on + strand at 678.521 kb on - strand at 678.532 kb on + strand at 678.532 kb on + strand at 678.532 kb on + strand at 678.540 kb on - strand at 678.567 kb on + strand at 678.588 kb on + strand at 678.588 kb on + strand at 678.593 kb on + strand at 678.593 kb on + strand at 678.596 kb on - strand at 678.596 kb on - strand at 678.626 kb on + strand, within CCNA_00631 at 678.627 kb on - strand, within CCNA_00631 at 678.627 kb on - strand, within CCNA_00631 at 678.635 kb on + strand, within CCNA_00631 at 678.661 kb on - strand, within CCNA_00631 at 678.661 kb on - strand, within CCNA_00631 at 678.662 kb on - strand, within CCNA_00631 at 678.668 kb on + strand, within CCNA_00631 at 678.672 kb on - strand, within CCNA_00631 at 678.674 kb on + strand, within CCNA_00631 at 678.749 kb on - strand, within CCNA_00631 at 678.764 kb on + strand, within CCNA_00631 at 678.772 kb on - strand, within CCNA_00631 at 678.772 kb on - strand, within CCNA_00631 at 678.809 kb on + strand, within CCNA_00631 at 678.809 kb on + strand, within CCNA_00631 at 678.809 kb on + strand, within CCNA_00631 at 678.809 kb on + strand, within CCNA_00631 at 678.809 kb on + strand, within CCNA_00631 at 678.812 kb on - strand, within CCNA_00631 at 678.817 kb on - strand, within CCNA_00631 at 678.817 kb on - strand, within CCNA_00631 at 678.817 kb on - strand, within CCNA_00631 at 678.817 kb on - strand, within CCNA_00631 at 678.817 kb on - strand, within CCNA_00631 at 678.869 kb on + strand, within CCNA_00631 at 678.869 kb on + strand, within CCNA_00631 at 678.884 kb on + strand, within CCNA_00631 at 678.887 kb on - strand, within CCNA_00631 at 678.922 kb on + strand, within CCNA_00631 at 678.974 kb on - strand, within CCNA_00631 at 678.980 kb on + strand, within CCNA_00631 at 679.011 kb on + strand at 679.030 kb on + strand at 679.038 kb on - strand at 679.038 kb on - strand at 679.038 kb on - strand at 679.044 kb on + strand at 679.079 kb on + strand, within CCNA_00632 at 679.079 kb on + strand, within CCNA_00632 at 679.079 kb on + strand, within CCNA_00632 at 679.079 kb on + strand, within CCNA_00632 at 679.079 kb on - strand, within CCNA_00632 at 679.087 kb on - strand, within CCNA_00632 at 679.098 kb on + strand, within CCNA_00632 at 679.126 kb on + strand, within CCNA_00632 at 679.126 kb on + strand, within CCNA_00632 at 679.146 kb on + strand, within CCNA_00632 at 679.149 kb on - strand, within CCNA_00632 at 679.154 kb on - strand, within CCNA_00632 at 679.181 kb on - strand, within CCNA_00632 at 679.203 kb on + strand, within CCNA_00632 at 679.211 kb on - strand, within CCNA_00632 at 679.250 kb on + strand, within CCNA_00632 at 679.257 kb on + strand, within CCNA_00632 at 679.257 kb on + strand, within CCNA_00632 at 679.257 kb on + strand, within CCNA_00632 at 679.257 kb on + strand, within CCNA_00632 at 679.262 kb on + strand, within CCNA_00632 at 679.272 kb on + strand, within CCNA_00632 at 679.291 kb on + strand, within CCNA_00632 at 679.299 kb on - strand, within CCNA_00632 at 679.376 kb on + strand at 679.422 kb on - strand at 679.437 kb on - strand at 679.437 kb on - strand at 679.446 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.501 kb on - strand, within CCNA_00633 at 679.537 kb on + strand, within CCNA_00633 at 679.550 kb on - strand, within CCNA_00633 at 679.554 kb on - strand, within CCNA_00633 at 679.569 kb on + strand, within CCNA_00633 at 679.579 kb on - strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.657 kb on + strand, within CCNA_00633 at 679.667 kb on - strand, within CCNA_00633 at 679.677 kb on - strand, within CCNA_00633 at 679.681 kb on + strand, within CCNA_00633 at 679.743 kb on - strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on - strand, within CCNA_00633 at 679.763 kb on + strand, within CCNA_00633 at 679.766 kb on - strand, within CCNA_00633 at 679.776 kb on - strand, within CCNA_00633 at 679.781 kb on - strand, within CCNA_00633 at 679.783 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.854 kb on + strand, within CCNA_00633 at 679.858 kb on + strand, within CCNA_00633 at 679.878 kb on + strand, within CCNA_00633 at 679.888 kb on + strand, within CCNA_00633 at 679.896 kb on - strand at 679.896 kb on - strand, within CCNA_00633 at 679.909 kb on - strand, within CCNA_00633 at 679.920 kb on - strand, within CCNA_00633 at 679.923 kb on + strand, within CCNA_00633 at 679.972 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.988 kb on + strand, within CCNA_00633 at 679.996 kb on - strand, within CCNA_00633 at 680.007 kb on + strand, within CCNA_00633 at 680.019 kb on + strand, within CCNA_00633 at 680.023 kb on + strand, within CCNA_00633 at 680.038 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.122 kb on + strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.200 kb on + strand, within CCNA_00633 at 680.206 kb on + strand, within CCNA_00633 at 680.208 kb on - strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.255 kb on - strand, within CCNA_00633 at 680.262 kb on - strand, within CCNA_00633 at 680.281 kb on - strand, within CCNA_00633 at 680.282 kb on - strand, within CCNA_00633 at 680.325 kb on - strand, within CCNA_00633 at 680.326 kb on + strand, within CCNA_00633 at 680.336 kb on + strand, within CCNA_00633 at 680.341 kb on + strand, within CCNA_00633 at 680.345 kb on - strand, within CCNA_00633 at 680.360 kb on + strand at 680.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 678,113 + CCNA_00630 0.80 +0.9 678,142 + CCNA_00630 0.81 +1.2 678,163 + CCNA_00630 0.82 +0.4 678,181 - CCNA_00630 0.83 +0.8 678,220 + CCNA_00630 0.84 -0.1 678,243 + CCNA_00630 0.85 +0.4 678,244 - CCNA_00630 0.85 +1.2 678,315 - CCNA_00630 0.88 -1.7 678,316 - CCNA_00630 0.88 +0.1 678,325 - CCNA_00630 0.89 -0.2 678,349 - CCNA_00630 0.90 +3.3 678,361 + -0.0 678,361 + -0.1 678,369 - +0.5 678,369 - +1.5 678,399 - +1.7 678,403 + +0.9 678,411 - +0.1 678,415 + -1.3 678,423 - +0.9 678,448 + -0.8 678,448 + +1.1 678,469 - +0.0 678,469 - -1.2 678,495 + -0.2 678,521 - +0.5 678,532 + +0.9 678,532 + +1.1 678,532 + +1.1 678,540 - +1.1 678,567 + +0.7 678,588 + +1.2 678,588 + -0.1 678,593 + -0.3 678,593 + -0.0 678,596 - +1.2 678,596 - +2.0 678,626 + CCNA_00631 0.11 +0.4 678,627 - CCNA_00631 0.11 +0.5 678,627 - CCNA_00631 0.11 -0.2 678,635 + CCNA_00631 0.13 +1.2 678,661 - CCNA_00631 0.19 +1.5 678,661 - CCNA_00631 0.19 +1.1 678,662 - CCNA_00631 0.19 +0.9 678,668 + CCNA_00631 0.20 -0.4 678,672 - CCNA_00631 0.21 -1.2 678,674 + CCNA_00631 0.21 -1.1 678,749 - CCNA_00631 0.38 +1.1 678,764 + CCNA_00631 0.41 -0.6 678,772 - CCNA_00631 0.43 -0.0 678,772 - CCNA_00631 0.43 -0.3 678,809 + CCNA_00631 0.51 +0.5 678,809 + CCNA_00631 0.51 +1.8 678,809 + CCNA_00631 0.51 -1.7 678,809 + CCNA_00631 0.51 +0.9 678,809 + CCNA_00631 0.51 +1.3 678,812 - CCNA_00631 0.52 +1.2 678,817 - CCNA_00631 0.53 -0.9 678,817 - CCNA_00631 0.53 -0.3 678,817 - CCNA_00631 0.53 +0.8 678,817 - CCNA_00631 0.53 -0.5 678,817 - CCNA_00631 0.53 +1.2 678,869 + CCNA_00631 0.64 +0.3 678,869 + CCNA_00631 0.64 -0.2 678,884 + CCNA_00631 0.68 +0.6 678,887 - CCNA_00631 0.68 +0.1 678,922 + CCNA_00631 0.76 +0.7 678,974 - CCNA_00631 0.88 +0.2 678,980 + CCNA_00631 0.89 +1.2 679,011 + -0.5 679,030 + +0.2 679,038 - -0.1 679,038 - +0.5 679,038 - -0.5 679,044 + -0.4 679,079 + CCNA_00632 0.14 +0.3 679,079 + CCNA_00632 0.14 +0.3 679,079 + CCNA_00632 0.14 -0.2 679,079 + CCNA_00632 0.14 +1.6 679,079 - CCNA_00632 0.14 +3.9 679,087 - CCNA_00632 0.17 +0.7 679,098 + CCNA_00632 0.20 -0.1 679,126 + CCNA_00632 0.27 -0.7 679,126 + CCNA_00632 0.27 -0.8 679,146 + CCNA_00632 0.33 +0.5 679,149 - CCNA_00632 0.33 -0.1 679,154 - CCNA_00632 0.35 -1.0 679,181 - CCNA_00632 0.42 -0.1 679,203 + CCNA_00632 0.48 -0.4 679,211 - CCNA_00632 0.50 +1.7 679,250 + CCNA_00632 0.61 -1.7 679,257 + CCNA_00632 0.63 -0.4 679,257 + CCNA_00632 0.63 +1.1 679,257 + CCNA_00632 0.63 +0.9 679,257 + CCNA_00632 0.63 -1.1 679,262 + CCNA_00632 0.64 +1.1 679,272 + CCNA_00632 0.67 +0.8 679,291 + CCNA_00632 0.72 +1.6 679,299 - CCNA_00632 0.74 -1.3 679,376 + +0.1 679,422 - -0.0 679,437 - -0.8 679,437 - +0.7 679,446 + -1.5 679,479 + +1.3 679,479 + -1.0 679,479 + +0.2 679,479 + -0.4 679,487 - +0.8 679,487 - +1.1 679,487 - -0.4 679,501 - CCNA_00633 0.10 +1.2 679,537 + CCNA_00633 0.14 +0.8 679,550 - CCNA_00633 0.15 -0.8 679,554 - CCNA_00633 0.15 -0.3 679,569 + CCNA_00633 0.17 +0.5 679,579 - CCNA_00633 0.17 -0.8 679,615 + CCNA_00633 0.21 +0.1 679,615 + CCNA_00633 0.21 +0.8 679,623 - CCNA_00633 0.22 -0.3 679,623 - CCNA_00633 0.22 +0.3 679,623 - CCNA_00633 0.22 -0.2 679,623 - CCNA_00633 0.22 -0.9 679,657 + CCNA_00633 0.25 -0.9 679,667 - CCNA_00633 0.26 +0.3 679,677 - CCNA_00633 0.27 -0.3 679,681 + CCNA_00633 0.27 -0.3 679,743 - CCNA_00633 0.33 +0.7 679,758 + CCNA_00633 0.34 +1.3 679,758 + CCNA_00633 0.34 -0.1 679,758 - CCNA_00633 0.34 +1.0 679,763 + CCNA_00633 0.35 +0.7 679,766 - CCNA_00633 0.35 -1.1 679,776 - CCNA_00633 0.36 +0.8 679,781 - CCNA_00633 0.36 +1.8 679,783 + CCNA_00633 0.36 -0.6 679,831 + CCNA_00633 0.41 +1.3 679,831 + CCNA_00633 0.41 -0.6 679,831 + CCNA_00633 0.41 +0.6 679,831 + CCNA_00633 0.41 +0.7 679,831 + CCNA_00633 0.41 -2.3 679,831 + CCNA_00633 0.41 +0.3 679,839 - CCNA_00633 0.42 +1.1 679,839 - CCNA_00633 0.42 +0.9 679,854 + CCNA_00633 0.43 +0.8 679,858 + CCNA_00633 0.43 -1.0 679,878 + CCNA_00633 0.45 -0.2 679,888 + CCNA_00633 0.46 -1.4 679,896 - +2.2 679,896 - CCNA_00633 0.47 +0.9 679,909 - CCNA_00633 0.48 -0.3 679,920 - CCNA_00633 0.49 -0.3 679,923 + CCNA_00633 0.49 -1.2 679,972 - CCNA_00633 0.54 -1.1 679,982 - CCNA_00633 0.55 +0.1 679,982 - CCNA_00633 0.55 +0.9 679,988 + CCNA_00633 0.55 +0.8 679,996 - CCNA_00633 0.56 +2.2 680,007 + CCNA_00633 0.57 +0.4 680,019 + CCNA_00633 0.58 -0.3 680,023 + CCNA_00633 0.59 +1.2 680,038 + CCNA_00633 0.60 +0.1 680,066 + CCNA_00633 0.63 -0.3 680,066 + CCNA_00633 0.63 +1.9 680,074 - CCNA_00633 0.63 +0.3 680,074 - CCNA_00633 0.63 -1.0 680,074 - CCNA_00633 0.63 +1.2 680,098 + CCNA_00633 0.66 -0.4 680,098 + CCNA_00633 0.66 -0.9 680,122 + CCNA_00633 0.68 -2.7 680,130 - CCNA_00633 0.69 -0.0 680,130 - CCNA_00633 0.69 -0.4 680,200 + CCNA_00633 0.75 +1.2 680,206 + CCNA_00633 0.76 -0.3 680,208 - CCNA_00633 0.76 -0.1 680,216 + CCNA_00633 0.77 -1.4 680,216 + CCNA_00633 0.77 +1.2 680,224 - CCNA_00633 0.77 -1.2 680,224 - CCNA_00633 0.77 +1.1 680,224 - CCNA_00633 0.77 -0.1 680,236 + CCNA_00633 0.78 -1.2 680,236 + CCNA_00633 0.78 +0.3 680,236 + CCNA_00633 0.78 -0.2 680,236 + CCNA_00633 0.78 -0.3 680,236 + CCNA_00633 0.78 +2.2 680,236 + CCNA_00633 0.78 -0.5 680,236 + CCNA_00633 0.78 -1.3 680,236 + CCNA_00633 0.78 +0.3 680,236 + CCNA_00633 0.78 -0.8 680,236 + CCNA_00633 0.78 -1.2 680,236 + CCNA_00633 0.78 +0.9 680,244 - CCNA_00633 0.79 +0.8 680,244 - CCNA_00633 0.79 -0.6 680,244 - CCNA_00633 0.79 -0.6 680,244 - CCNA_00633 0.79 +0.8 680,244 - CCNA_00633 0.79 +0.3 680,244 - CCNA_00633 0.79 +3.3 680,244 - CCNA_00633 0.79 +0.6 680,244 - CCNA_00633 0.79 -0.3 680,244 - CCNA_00633 0.79 -0.7 680,244 - CCNA_00633 0.79 +1.2 680,255 - CCNA_00633 0.80 +0.9 680,262 - CCNA_00633 0.81 +0.1 680,281 - CCNA_00633 0.83 +1.9 680,282 - CCNA_00633 0.83 +0.5 680,325 - CCNA_00633 0.87 -1.3 680,326 + CCNA_00633 0.87 +0.8 680,336 + CCNA_00633 0.88 -0.1 680,341 + CCNA_00633 0.88 +1.5 680,345 - CCNA_00633 0.89 +1.1 680,360 + +1.2 680,371 + +1.2
Or see this region's nucleotide sequence