Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00557

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00556 and CCNA_00557 overlap by 44 nucleotidesCCNA_00557 and CCNA_00558 overlap by 4 nucleotidesCCNA_00558 and CCNA_00559 are separated by 127 nucleotides CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 CCNA_00557: CCNA_00557 - endonuclease/exonuclease/phosphatase family protein, at 573,020 to 573,799 _00557 CCNA_00558: CCNA_00558 - methyltransferase, at 573,796 to 574,461 _00558 CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 Position (kb) 573 574Strain fitness (log2 ratio) -2 -1 0 1 2 3at 572.036 kb on + strand, within CCNA_00556at 572.072 kb on + strand, within CCNA_00556at 572.084 kb on - strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.091 kb on + strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.099 kb on - strand, within CCNA_00556at 572.121 kb on - strand, within CCNA_00556at 572.140 kb on + strand, within CCNA_00556at 572.221 kb on - strand, within CCNA_00556at 572.283 kb on + strand, within CCNA_00556at 572.338 kb on - strand, within CCNA_00556at 572.401 kb on - strand, within CCNA_00556at 572.432 kb on - strand, within CCNA_00556at 572.444 kb on + strand, within CCNA_00556at 572.452 kb on - strand, within CCNA_00556at 572.460 kb on + strand, within CCNA_00556at 572.465 kb on + strand, within CCNA_00556at 572.468 kb on - strand, within CCNA_00556at 572.500 kb on + strand, within CCNA_00556at 572.508 kb on - strand, within CCNA_00556at 572.508 kb on - strand, within CCNA_00556at 572.508 kb on - strand, within CCNA_00556at 572.508 kb on - strand, within CCNA_00556at 572.546 kb on - strand, within CCNA_00556at 572.549 kb on + strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.586 kb on + strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.594 kb on - strand, within CCNA_00556at 572.653 kb on + strand, within CCNA_00556at 572.683 kb on + strand, within CCNA_00556at 572.725 kb on + strand, within CCNA_00556at 572.725 kb on + strand, within CCNA_00556at 572.733 kb on - strand, within CCNA_00556at 572.750 kb on - strand, within CCNA_00556at 572.809 kb on + strand, within CCNA_00556at 572.864 kb on + strand, within CCNA_00556at 572.897 kb on + strand, within CCNA_00556at 572.910 kb on - strand, within CCNA_00556at 572.912 kb on + strandat 572.922 kb on + strandat 572.925 kb on - strandat 573.026 kb on - strandat 573.091 kb on - strandat 573.142 kb on + strand, within CCNA_00557at 573.199 kb on - strand, within CCNA_00557at 573.216 kb on + strand, within CCNA_00557at 573.226 kb on + strand, within CCNA_00557at 573.227 kb on + strand, within CCNA_00557at 573.234 kb on + strand, within CCNA_00557at 573.238 kb on + strand, within CCNA_00557at 573.249 kb on - strand, within CCNA_00557at 573.254 kb on - strand, within CCNA_00557at 573.261 kb on + strand, within CCNA_00557at 573.290 kb on - strand, within CCNA_00557at 573.305 kb on - strand, within CCNA_00557at 573.305 kb on - strand, within CCNA_00557at 573.328 kb on + strand, within CCNA_00557at 573.329 kb on + strand, within CCNA_00557at 573.329 kb on + strand, within CCNA_00557at 573.330 kb on + strand, within CCNA_00557at 573.337 kb on - strand, within CCNA_00557at 573.396 kb on - strand, within CCNA_00557at 573.404 kb on + strand, within CCNA_00557at 573.411 kb on - strand, within CCNA_00557at 573.431 kb on - strand, within CCNA_00557at 573.445 kb on + strand, within CCNA_00557at 573.465 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.475 kb on + strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.483 kb on - strand, within CCNA_00557at 573.510 kb on + strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.517 kb on - strand, within CCNA_00557at 573.524 kb on + strand, within CCNA_00557at 573.565 kb on + strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.566 kb on - strand, within CCNA_00557at 573.586 kb on - strand, within CCNA_00557at 573.595 kb on + strand, within CCNA_00557at 573.629 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.635 kb on - strand, within CCNA_00557at 573.637 kb on + strand, within CCNA_00557at 573.645 kb on - strand, within CCNA_00557at 573.721 kb on - strand, within CCNA_00557at 573.738 kb on + strandat 573.740 kb on - strandat 573.761 kb on + strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.769 kb on - strandat 573.770 kb on + strandat 573.792 kb on + strandat 573.839 kb on - strandat 573.897 kb on + strand, within CCNA_00558at 573.912 kb on + strand, within CCNA_00558at 573.915 kb on - strand, within CCNA_00558at 573.969 kb on + strand, within CCNA_00558at 573.985 kb on - strand, within CCNA_00558at 573.990 kb on - strand, within CCNA_00558at 574.003 kb on - strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.007 kb on + strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.015 kb on - strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.039 kb on + strand, within CCNA_00558at 574.040 kb on + strand, within CCNA_00558at 574.053 kb on - strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.078 kb on + strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.086 kb on - strand, within CCNA_00558at 574.093 kb on + strand, within CCNA_00558at 574.122 kb on - strand, within CCNA_00558at 574.196 kb on + strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.204 kb on - strand, within CCNA_00558at 574.246 kb on + strand, within CCNA_00558at 574.256 kb on + strand, within CCNA_00558at 574.259 kb on - strand, within CCNA_00558at 574.264 kb on - strand, within CCNA_00558at 574.297 kb on - strand, within CCNA_00558at 574.305 kb on - strand, within CCNA_00558at 574.339 kb on - strand, within CCNA_00558at 574.381 kb on - strand, within CCNA_00558at 574.420 kb on + strandat 574.446 kb on + strandat 574.447 kb on + strandat 574.447 kb on + strandat 574.454 kb on - strandat 574.501 kb on - strandat 574.501 kb on - strandat 574.510 kb on + strandat 574.567 kb on - strandat 574.587 kb on + strandat 574.759 kb on - strand, within CCNA_00559at 574.759 kb on - strand, within CCNA_00559at 574.773 kb on - strand, within CCNA_00559at 574.790 kb on - strand, within CCNA_00559at 574.795 kb on - strand, within CCNA_00559

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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572,036 + CCNA_00556 0.32 +2.1
572,072 + CCNA_00556 0.35 +3.1
572,084 - CCNA_00556 0.35 -0.8
572,091 + CCNA_00556 0.36 +2.1
572,091 + CCNA_00556 0.36 +0.5
572,099 - CCNA_00556 0.36 +1.3
572,099 - CCNA_00556 0.36 +1.6
572,099 - CCNA_00556 0.36 -1.1
572,099 - CCNA_00556 0.36 -0.0
572,121 - CCNA_00556 0.38 -1.0
572,140 + CCNA_00556 0.39 +0.4
572,221 - CCNA_00556 0.44 +1.5
572,283 + CCNA_00556 0.49 +1.3
572,338 - CCNA_00556 0.52 +0.5
572,401 - CCNA_00556 0.56 -0.6
572,432 - CCNA_00556 0.58 -2.7
572,444 + CCNA_00556 0.59 -1.1
572,452 - CCNA_00556 0.60 +1.3
572,460 + CCNA_00556 0.60 -0.5
572,465 + CCNA_00556 0.61 -0.5
572,468 - CCNA_00556 0.61 +0.6
572,500 + CCNA_00556 0.63 -0.1
572,508 - CCNA_00556 0.63 +1.9
572,508 - CCNA_00556 0.63 -0.1
572,508 - CCNA_00556 0.63 -0.3
572,508 - CCNA_00556 0.63 -0.5
572,546 - CCNA_00556 0.66 +1.6
572,549 + CCNA_00556 0.66 +1.0
572,586 + CCNA_00556 0.69 +0.5
572,586 + CCNA_00556 0.69 +0.1
572,586 + CCNA_00556 0.69 +0.3
572,594 - CCNA_00556 0.69 +0.0
572,594 - CCNA_00556 0.69 -0.2
572,594 - CCNA_00556 0.69 +1.9
572,594 - CCNA_00556 0.69 -0.4
572,594 - CCNA_00556 0.69 -1.3
572,594 - CCNA_00556 0.69 +0.7
572,594 - CCNA_00556 0.69 -1.7
572,594 - CCNA_00556 0.69 -1.9
572,653 + CCNA_00556 0.73 -0.8
572,683 + CCNA_00556 0.75 -0.7
572,725 + CCNA_00556 0.78 +1.5
572,725 + CCNA_00556 0.78 -1.3
572,733 - CCNA_00556 0.78 -2.0
572,750 - CCNA_00556 0.79 +0.6
572,809 + CCNA_00556 0.83 +1.4
572,864 + CCNA_00556 0.87 -0.7
572,897 + CCNA_00556 0.89 -1.1
572,910 - CCNA_00556 0.90 +0.1
572,912 + -0.8
572,922 + -1.1
572,925 - -0.1
573,026 - -1.7
573,091 - -0.2
573,142 + CCNA_00557 0.16 +3.3
573,199 - CCNA_00557 0.23 +0.7
573,216 + CCNA_00557 0.25 -1.4
573,226 + CCNA_00557 0.26 +0.7
573,227 + CCNA_00557 0.27 +0.6
573,234 + CCNA_00557 0.27 -1.6
573,238 + CCNA_00557 0.28 -0.2
573,249 - CCNA_00557 0.29 +0.3
573,254 - CCNA_00557 0.30 -0.4
573,261 + CCNA_00557 0.31 -0.9
573,290 - CCNA_00557 0.35 +1.4
573,305 - CCNA_00557 0.37 +0.4
573,305 - CCNA_00557 0.37 -0.3
573,328 + CCNA_00557 0.39 -0.4
573,329 + CCNA_00557 0.40 +1.6
573,329 + CCNA_00557 0.40 +0.7
573,330 + CCNA_00557 0.40 -0.4
573,337 - CCNA_00557 0.41 +2.6
573,396 - CCNA_00557 0.48 +0.2
573,404 + CCNA_00557 0.49 -0.2
573,411 - CCNA_00557 0.50 -0.2
573,431 - CCNA_00557 0.53 -0.0
573,445 + CCNA_00557 0.54 +1.6
573,465 + CCNA_00557 0.57 -0.6
573,475 + CCNA_00557 0.58 +1.6
573,475 + CCNA_00557 0.58 +0.7
573,483 - CCNA_00557 0.59 +0.2
573,483 - CCNA_00557 0.59 +2.4
573,483 - CCNA_00557 0.59 -0.8
573,510 + CCNA_00557 0.63 +1.1
573,517 - CCNA_00557 0.64 -1.0
573,517 - CCNA_00557 0.64 +0.1
573,517 - CCNA_00557 0.64 +1.1
573,524 + CCNA_00557 0.65 +2.4
573,565 + CCNA_00557 0.70 +1.4
573,566 - CCNA_00557 0.70 -0.1
573,566 - CCNA_00557 0.70 +0.7
573,566 - CCNA_00557 0.70 +2.9
573,566 - CCNA_00557 0.70 +1.3
573,586 - CCNA_00557 0.73 -1.3
573,595 + CCNA_00557 0.74 -0.8
573,629 - CCNA_00557 0.78 +1.4
573,635 - CCNA_00557 0.79 +3.0
573,635 - CCNA_00557 0.79 +1.9
573,637 + CCNA_00557 0.79 +0.9
573,645 - CCNA_00557 0.80 +1.9
573,721 - CCNA_00557 0.90 +0.2
573,738 + -0.8
573,740 - -1.2
573,761 + +0.9
573,769 - +0.7
573,769 - +0.9
573,769 - -1.3
573,770 + +2.2
573,792 + -1.4
573,839 - +0.1
573,897 + CCNA_00558 0.15 +0.1
573,912 + CCNA_00558 0.17 -0.4
573,915 - CCNA_00558 0.18 -1.3
573,969 + CCNA_00558 0.26 +1.9
573,985 - CCNA_00558 0.28 -0.2
573,990 - CCNA_00558 0.29 +0.4
574,003 - CCNA_00558 0.31 +0.8
574,007 + CCNA_00558 0.32 +3.0
574,007 + CCNA_00558 0.32 -1.5
574,015 - CCNA_00558 0.33 +0.1
574,015 - CCNA_00558 0.33 +2.5
574,015 - CCNA_00558 0.33 +1.6
574,015 - CCNA_00558 0.33 -1.6
574,015 - CCNA_00558 0.33 +1.0
574,039 + CCNA_00558 0.36 +1.1
574,039 + CCNA_00558 0.36 +1.1
574,040 + CCNA_00558 0.37 +0.6
574,053 - CCNA_00558 0.39 +0.1
574,078 + CCNA_00558 0.42 -1.8
574,078 + CCNA_00558 0.42 -1.4
574,078 + CCNA_00558 0.42 +0.5
574,078 + CCNA_00558 0.42 +0.7
574,078 + CCNA_00558 0.42 -0.6
574,086 - CCNA_00558 0.44 +0.5
574,086 - CCNA_00558 0.44 +0.5
574,086 - CCNA_00558 0.44 +1.3
574,086 - CCNA_00558 0.44 -1.0
574,086 - CCNA_00558 0.44 +0.6
574,093 + CCNA_00558 0.45 +1.1
574,122 - CCNA_00558 0.49 -0.3
574,196 + CCNA_00558 0.60 -0.3
574,204 - CCNA_00558 0.61 +0.6
574,204 - CCNA_00558 0.61 +1.1
574,204 - CCNA_00558 0.61 +2.3
574,204 - CCNA_00558 0.61 +1.0
574,204 - CCNA_00558 0.61 +1.9
574,246 + CCNA_00558 0.68 -0.9
574,256 + CCNA_00558 0.69 -1.2
574,259 - CCNA_00558 0.70 +1.2
574,264 - CCNA_00558 0.70 +1.7
574,297 - CCNA_00558 0.75 +1.3
574,305 - CCNA_00558 0.76 -0.2
574,339 - CCNA_00558 0.82 +1.8
574,381 - CCNA_00558 0.88 +1.6
574,420 + -1.3
574,446 + +0.1
574,447 + +0.9
574,447 + -0.4
574,454 - +1.4
574,501 - +1.3
574,501 - +0.8
574,510 + -0.3
574,567 - +2.1
574,587 + +1.4
574,759 - CCNA_00559 0.15 +1.4
574,759 - CCNA_00559 0.15 +2.1
574,773 - CCNA_00559 0.16 +0.9
574,790 - CCNA_00559 0.17 +1.8
574,795 - CCNA_00559 0.18 +2.5

Or see this region's nucleotide sequence