Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00545

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00544 and CCNA_00545 are separated by 70 nucleotidesCCNA_00545 and CCNA_00546 are separated by 123 nucleotides CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754 _00544 CCNA_00545: CCNA_00545 - acetoacetyl-CoA reductase, at 563,825 to 564,547 _00545 CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453 _00546 Position (kb) 563 564 565Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 562.828 kb on - strand, within CCNA_00544at 562.844 kb on + strand, within CCNA_00544at 562.847 kb on - strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.849 kb on + strand, within CCNA_00544at 562.852 kb on - strand, within CCNA_00544at 562.857 kb on - strand, within CCNA_00544at 562.891 kb on + strand, within CCNA_00544at 562.909 kb on - strand, within CCNA_00544at 562.926 kb on - strand, within CCNA_00544at 562.947 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.949 kb on + strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 562.957 kb on - strand, within CCNA_00544at 563.012 kb on - strand, within CCNA_00544at 563.047 kb on + strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.055 kb on - strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.056 kb on + strand, within CCNA_00544at 563.064 kb on - strand, within CCNA_00544at 563.078 kb on + strand, within CCNA_00544at 563.095 kb on + strand, within CCNA_00544at 563.103 kb on - strand, within CCNA_00544at 563.173 kb on + strand, within CCNA_00544at 563.199 kb on + strand, within CCNA_00544at 563.208 kb on - strand, within CCNA_00544at 563.221 kb on + strand, within CCNA_00544at 563.222 kb on - strand, within CCNA_00544at 563.229 kb on - strand, within CCNA_00544at 563.257 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.317 kb on + strand, within CCNA_00544at 563.325 kb on - strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.344 kb on + strand, within CCNA_00544at 563.354 kb on + strand, within CCNA_00544at 563.362 kb on - strand, within CCNA_00544at 563.391 kb on + strand, within CCNA_00544at 563.391 kb on + strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.399 kb on - strand, within CCNA_00544at 563.423 kb on - strand, within CCNA_00544at 563.494 kb on + strand, within CCNA_00544at 563.507 kb on + strand, within CCNA_00544at 563.521 kb on + strand, within CCNA_00544at 563.521 kb on + strand, within CCNA_00544at 563.529 kb on - strand, within CCNA_00544at 563.542 kb on + strand, within CCNA_00544at 563.545 kb on - strand, within CCNA_00544at 563.549 kb on - strand, within CCNA_00544at 563.562 kb on - strand, within CCNA_00544at 563.574 kb on - strand, within CCNA_00544at 563.575 kb on - strand, within CCNA_00544at 563.619 kb on + strand, within CCNA_00544at 563.638 kb on - strandat 563.649 kb on + strandat 563.692 kb on + strandat 563.714 kb on - strandat 563.720 kb on + strandat 563.746 kb on - strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.748 kb on + strandat 563.756 kb on - strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.760 kb on + strandat 563.768 kb on - strandat 563.768 kb on - strandat 563.942 kb on + strand, within CCNA_00545at 563.942 kb on + strand, within CCNA_00545at 563.952 kb on + strand, within CCNA_00545at 563.983 kb on + strand, within CCNA_00545at 563.983 kb on + strandat 563.983 kb on - strand, within CCNA_00545at 564.007 kb on + strand, within CCNA_00545at 564.015 kb on - strand, within CCNA_00545at 564.029 kb on + strand, within CCNA_00545at 564.036 kb on - strand, within CCNA_00545at 564.095 kb on - strandat 564.097 kb on + strand, within CCNA_00545at 564.100 kb on + strand, within CCNA_00545at 564.108 kb on + strand, within CCNA_00545at 564.108 kb on + strand, within CCNA_00545at 564.113 kb on + strand, within CCNA_00545at 564.116 kb on - strand, within CCNA_00545at 564.116 kb on - strand, within CCNA_00545at 564.120 kb on + strand, within CCNA_00545at 564.120 kb on + strand, within CCNA_00545at 564.121 kb on + strand, within CCNA_00545at 564.128 kb on - strand, within CCNA_00545at 564.149 kb on - strand, within CCNA_00545at 564.183 kb on - strand, within CCNA_00545at 564.183 kb on - strand, within CCNA_00545at 564.212 kb on + strand, within CCNA_00545at 564.220 kb on - strand, within CCNA_00545at 564.225 kb on - strand, within CCNA_00545at 564.225 kb on - strand, within CCNA_00545at 564.242 kb on + strand, within CCNA_00545at 564.256 kb on + strand, within CCNA_00545at 564.276 kb on + strand, within CCNA_00545at 564.290 kb on + strand, within CCNA_00545at 564.302 kb on + strand, within CCNA_00545at 564.303 kb on + strand, within CCNA_00545at 564.310 kb on - strand, within CCNA_00545at 564.313 kb on + strand, within CCNA_00545at 564.320 kb on + strand, within CCNA_00545at 564.320 kb on + strand, within CCNA_00545at 564.328 kb on - strand, within CCNA_00545at 564.344 kb on - strand, within CCNA_00545at 564.434 kb on + strand, within CCNA_00545at 564.502 kb on - strandat 564.502 kb on - strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.507 kb on + strandat 564.513 kb on + strandat 564.515 kb on - strandat 564.515 kb on - strandat 564.515 kb on - strandat 564.535 kb on + strandat 564.538 kb on - strandat 564.538 kb on - strandat 564.538 kb on - strandat 564.543 kb on - strandat 564.543 kb on - strandat 564.550 kb on - strandat 564.571 kb on - strandat 564.571 kb on - strandat 564.589 kb on + strandat 564.601 kb on + strandat 564.607 kb on + strandat 564.622 kb on + strandat 564.656 kb on + strandat 564.656 kb on - strandat 564.660 kb on + strandat 564.675 kb on - strandat 564.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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562,828 - CCNA_00544 0.21 -0.8
562,844 + CCNA_00544 0.23 +0.3
562,847 - CCNA_00544 0.23 -1.6
562,849 + CCNA_00544 0.23 -0.2
562,849 + CCNA_00544 0.23 +0.4
562,849 + CCNA_00544 0.23 +1.7
562,849 + CCNA_00544 0.23 +2.1
562,849 + CCNA_00544 0.23 +2.4
562,849 + CCNA_00544 0.23 +0.6
562,852 - CCNA_00544 0.23 -2.0
562,857 - CCNA_00544 0.24 +1.3
562,891 + CCNA_00544 0.27 -2.7
562,909 - CCNA_00544 0.28 +0.4
562,926 - CCNA_00544 0.30 -0.7
562,947 + CCNA_00544 0.31 +2.3
562,949 + CCNA_00544 0.31 -0.9
562,949 + CCNA_00544 0.31 +0.6
562,949 + CCNA_00544 0.31 +0.3
562,957 - CCNA_00544 0.32 +0.9
562,957 - CCNA_00544 0.32 -0.4
563,012 - CCNA_00544 0.37 -0.7
563,047 + CCNA_00544 0.40 -1.3
563,055 - CCNA_00544 0.40 +0.9
563,055 - CCNA_00544 0.40 +0.2
563,055 - CCNA_00544 0.40 +0.8
563,056 + CCNA_00544 0.41 +1.2
563,056 + CCNA_00544 0.41 +1.4
563,064 - CCNA_00544 0.41 +0.9
563,078 + CCNA_00544 0.42 +1.6
563,095 + CCNA_00544 0.44 +0.6
563,103 - CCNA_00544 0.45 +0.1
563,173 + CCNA_00544 0.51 +1.3
563,199 + CCNA_00544 0.53 +0.1
563,208 - CCNA_00544 0.53 -0.8
563,221 + CCNA_00544 0.55 +2.0
563,222 - CCNA_00544 0.55 -0.2
563,229 - CCNA_00544 0.55 +0.5
563,257 + CCNA_00544 0.58 +1.5
563,317 + CCNA_00544 0.63 +1.2
563,317 + CCNA_00544 0.63 +3.9
563,325 - CCNA_00544 0.63 -0.0
563,344 + CCNA_00544 0.65 -1.4
563,344 + CCNA_00544 0.65 +2.0
563,344 + CCNA_00544 0.65 +0.5
563,354 + CCNA_00544 0.66 +0.5
563,362 - CCNA_00544 0.67 -1.2
563,391 + CCNA_00544 0.69 +2.0
563,391 + CCNA_00544 0.69 +1.2
563,399 - CCNA_00544 0.70 -0.7
563,399 - CCNA_00544 0.70 +1.6
563,399 - CCNA_00544 0.70 -0.8
563,423 - CCNA_00544 0.72 +1.1
563,494 + CCNA_00544 0.78 +1.0
563,507 + CCNA_00544 0.79 +1.4
563,521 + CCNA_00544 0.80 +0.9
563,521 + CCNA_00544 0.80 +0.3
563,529 - CCNA_00544 0.81 +0.1
563,542 + CCNA_00544 0.82 +1.0
563,545 - CCNA_00544 0.82 +1.0
563,549 - CCNA_00544 0.82 -0.3
563,562 - CCNA_00544 0.84 +0.2
563,574 - CCNA_00544 0.85 -1.1
563,575 - CCNA_00544 0.85 -1.1
563,619 + CCNA_00544 0.88 +2.0
563,638 - +0.8
563,649 + +2.0
563,692 + +1.4
563,714 - +1.3
563,720 + +0.9
563,746 - +1.1
563,748 + +2.5
563,748 + +2.4
563,748 + +2.4
563,748 + +1.3
563,756 - +1.2
563,760 + +1.1
563,760 + +2.5
563,760 + +3.0
563,760 + +0.5
563,768 - -0.7
563,768 - -0.6
563,942 + CCNA_00545 0.16 +0.8
563,942 + CCNA_00545 0.16 +1.6
563,952 + CCNA_00545 0.18 +1.9
563,983 + CCNA_00545 0.22 +2.3
563,983 + +4.4
563,983 - CCNA_00545 0.22 +0.4
564,007 + CCNA_00545 0.25 +1.7
564,015 - CCNA_00545 0.26 -0.2
564,029 + CCNA_00545 0.28 -1.6
564,036 - CCNA_00545 0.29 +0.7
564,095 - +4.7
564,097 + CCNA_00545 0.38 +3.7
564,100 + CCNA_00545 0.38 +0.7
564,108 + CCNA_00545 0.39 +1.3
564,108 + CCNA_00545 0.39 +1.8
564,113 + CCNA_00545 0.40 -0.4
564,116 - CCNA_00545 0.40 +2.6
564,116 - CCNA_00545 0.40 +1.3
564,120 + CCNA_00545 0.41 +1.0
564,120 + CCNA_00545 0.41 +0.9
564,121 + CCNA_00545 0.41 +2.0
564,128 - CCNA_00545 0.42 +0.4
564,149 - CCNA_00545 0.45 -1.6
564,183 - CCNA_00545 0.50 -0.1
564,183 - CCNA_00545 0.50 +0.4
564,212 + CCNA_00545 0.54 +1.9
564,220 - CCNA_00545 0.55 +1.3
564,225 - CCNA_00545 0.55 +1.7
564,225 - CCNA_00545 0.55 +3.9
564,242 + CCNA_00545 0.58 +2.1
564,256 + CCNA_00545 0.60 +0.4
564,276 + CCNA_00545 0.62 +1.8
564,290 + CCNA_00545 0.64 +2.0
564,302 + CCNA_00545 0.66 +1.9
564,303 + CCNA_00545 0.66 +1.1
564,310 - CCNA_00545 0.67 -0.7
564,313 + CCNA_00545 0.67 +0.7
564,320 + CCNA_00545 0.68 +1.4
564,320 + CCNA_00545 0.68 -0.1
564,328 - CCNA_00545 0.70 +0.2
564,344 - CCNA_00545 0.72 +1.7
564,434 + CCNA_00545 0.84 +4.1
564,502 - +0.9
564,502 - -0.4
564,507 + +3.7
564,507 + +2.9
564,507 + +2.7
564,507 + +1.9
564,513 + +4.3
564,515 - +1.6
564,515 - +0.6
564,515 - -0.4
564,535 + +3.2
564,538 - -1.0
564,538 - +0.9
564,538 - -1.3
564,543 - -0.8
564,543 - +1.9
564,550 - +2.1
564,571 - +0.7
564,571 - -0.7
564,589 + +1.9
564,601 + +1.1
564,607 + -0.4
564,622 + -1.1
564,656 + +2.1
564,656 - +0.3
564,660 + +1.5
564,675 - -1.2
564,716 + +0.4

Or see this region's nucleotide sequence