Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00533 and CCNA_00534 are separated by 126 nucleotides CCNA_00534 and CCNA_00535 are separated by 42 nucleotides CCNA_00535 and CCNA_00536 are separated by 293 nucleotides
CCNA_00533: CCNA_00533 - secreted polysaccharide polymerase hfsI, at 544,865 to 546,187
_00533
CCNA_00534: CCNA_00534 - hypothetical protein, at 546,314 to 547,336
_00534
CCNA_00535: CCNA_00535 - hypothetical protein, at 547,379 to 547,537
_00535
CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901
_00536
Position (kb) 546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 545.337 kb on - strand, within CCNA_00533 at 545.342 kb on - strand, within CCNA_00533 at 545.392 kb on - strand, within CCNA_00533 at 545.392 kb on - strand at 545.404 kb on + strand, within CCNA_00533 at 545.417 kb on - strand, within CCNA_00533 at 545.452 kb on - strand, within CCNA_00533 at 545.483 kb on - strand, within CCNA_00533 at 545.506 kb on + strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.572 kb on - strand, within CCNA_00533 at 545.595 kb on + strand, within CCNA_00533 at 545.603 kb on - strand, within CCNA_00533 at 545.618 kb on + strand, within CCNA_00533 at 545.655 kb on + strand, within CCNA_00533 at 545.664 kb on - strand, within CCNA_00533 at 545.664 kb on - strand, within CCNA_00533 at 545.673 kb on + strand, within CCNA_00533 at 545.673 kb on + strand, within CCNA_00533 at 545.691 kb on - strand, within CCNA_00533 at 545.696 kb on + strand, within CCNA_00533 at 545.704 kb on - strand, within CCNA_00533 at 545.704 kb on - strand, within CCNA_00533 at 545.707 kb on + strand, within CCNA_00533 at 545.713 kb on - strand, within CCNA_00533 at 545.734 kb on + strand, within CCNA_00533 at 545.734 kb on - strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.742 kb on + strand, within CCNA_00533 at 545.743 kb on + strand, within CCNA_00533 at 545.750 kb on - strand, within CCNA_00533 at 545.778 kb on - strand, within CCNA_00533 at 545.780 kb on + strand, within CCNA_00533 at 545.780 kb on + strand, within CCNA_00533 at 545.785 kb on + strand, within CCNA_00533 at 545.788 kb on - strand, within CCNA_00533 at 545.788 kb on - strand, within CCNA_00533 at 545.793 kb on - strand, within CCNA_00533 at 545.797 kb on - strand, within CCNA_00533 at 545.798 kb on - strand, within CCNA_00533 at 545.803 kb on + strand, within CCNA_00533 at 545.816 kb on - strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.838 kb on + strand, within CCNA_00533 at 545.845 kb on + strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.846 kb on - strand, within CCNA_00533 at 545.848 kb on - strand, within CCNA_00533 at 545.848 kb on - strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.883 kb on + strand, within CCNA_00533 at 545.891 kb on - strand, within CCNA_00533 at 545.894 kb on + strand, within CCNA_00533 at 545.902 kb on - strand, within CCNA_00533 at 545.902 kb on - strand, within CCNA_00533 at 545.912 kb on + strand, within CCNA_00533 at 545.921 kb on - strand, within CCNA_00533 at 545.930 kb on + strand, within CCNA_00533 at 545.975 kb on + strand, within CCNA_00533 at 545.978 kb on - strand, within CCNA_00533 at 545.990 kb on + strand, within CCNA_00533 at 545.996 kb on + strand, within CCNA_00533 at 545.998 kb on - strand, within CCNA_00533 at 546.013 kb on - strand, within CCNA_00533 at 546.013 kb on - strand, within CCNA_00533 at 546.019 kb on + strand, within CCNA_00533 at 546.035 kb on - strand, within CCNA_00533 at 546.036 kb on + strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.037 kb on - strand, within CCNA_00533 at 546.051 kb on + strand, within CCNA_00533 at 546.059 kb on - strand at 546.059 kb on - strand at 546.059 kb on - strand at 546.059 kb on - strand at 546.076 kb on - strand at 546.091 kb on + strand at 546.099 kb on - strand at 546.144 kb on - strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.150 kb on + strand at 546.158 kb on - strand at 546.158 kb on - strand at 546.226 kb on + strand at 546.282 kb on - strand at 546.298 kb on + strand at 546.304 kb on + strand at 546.304 kb on + strand at 546.304 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.312 kb on - strand at 546.312 kb on - strand at 546.314 kb on - strand at 546.314 kb on - strand at 546.316 kb on + strand at 546.324 kb on - strand at 546.324 kb on - strand at 546.324 kb on - strand at 546.328 kb on + strand at 546.328 kb on + strand at 546.328 kb on + strand at 546.336 kb on - strand at 546.336 kb on - strand at 546.336 kb on - strand at 546.345 kb on + strand at 546.345 kb on + strand at 546.345 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.350 kb on + strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.358 kb on - strand at 546.398 kb on - strand at 546.403 kb on - strand at 546.433 kb on + strand, within CCNA_00534 at 546.460 kb on + strand, within CCNA_00534 at 546.460 kb on + strand, within CCNA_00534 at 546.470 kb on + strand, within CCNA_00534 at 546.499 kb on + strand, within CCNA_00534 at 546.499 kb on + strand, within CCNA_00534 at 546.545 kb on - strand, within CCNA_00534 at 546.555 kb on + strand, within CCNA_00534 at 546.582 kb on + strand, within CCNA_00534 at 546.625 kb on + strand, within CCNA_00534 at 546.625 kb on + strand, within CCNA_00534 at 546.631 kb on - strand, within CCNA_00534 at 546.633 kb on - strand, within CCNA_00534 at 546.644 kb on - strand, within CCNA_00534 at 546.647 kb on + strand, within CCNA_00534 at 546.655 kb on - strand, within CCNA_00534 at 546.660 kb on - strand, within CCNA_00534 at 546.709 kb on - strand, within CCNA_00534 at 546.735 kb on + strand, within CCNA_00534 at 546.735 kb on - strand, within CCNA_00534 at 546.743 kb on - strand, within CCNA_00534 at 546.744 kb on - strand, within CCNA_00534 at 546.765 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.769 kb on + strand, within CCNA_00534 at 546.772 kb on + strand, within CCNA_00534 at 546.777 kb on - strand, within CCNA_00534 at 546.904 kb on + strand, within CCNA_00534 at 546.928 kb on - strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.935 kb on + strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.950 kb on + strand, within CCNA_00534 at 547.055 kb on + strand, within CCNA_00534 at 547.066 kb on - strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.084 kb on + strand, within CCNA_00534 at 547.090 kb on - strand, within CCNA_00534 at 547.096 kb on - strand, within CCNA_00534 at 547.151 kb on - strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.216 kb on - strand, within CCNA_00534 at 547.240 kb on + strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.261 kb on - strand at 547.261 kb on - strand at 547.263 kb on + strand at 547.263 kb on + strand at 547.263 kb on - strand at 547.268 kb on + strand at 547.268 kb on + strand at 547.276 kb on - strand at 547.283 kb on - strand at 547.289 kb on + strand at 547.302 kb on - strand at 547.322 kb on + strand at 547.330 kb on - strand at 547.330 kb on - strand at 547.332 kb on + strand at 547.339 kb on - strand at 547.340 kb on - strand at 547.344 kb on + strand at 547.387 kb on + strand at 547.388 kb on - strand at 547.419 kb on - strand, within CCNA_00535 at 547.500 kb on + strand, within CCNA_00535 at 547.503 kb on + strand, within CCNA_00535 at 547.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 545,337 - CCNA_00533 0.36 -1.0 545,342 - CCNA_00533 0.36 +0.0 545,392 - CCNA_00533 0.40 +1.5 545,392 - +1.8 545,404 + CCNA_00533 0.41 +0.7 545,417 - CCNA_00533 0.42 +0.4 545,452 - CCNA_00533 0.44 -1.2 545,483 - CCNA_00533 0.47 +0.4 545,506 + CCNA_00533 0.48 -1.0 545,572 - CCNA_00533 0.53 -2.0 545,572 - CCNA_00533 0.53 +0.3 545,572 - CCNA_00533 0.53 +0.0 545,595 + CCNA_00533 0.55 -2.2 545,603 - CCNA_00533 0.56 -1.7 545,618 + CCNA_00533 0.57 -0.6 545,655 + CCNA_00533 0.60 -0.5 545,664 - CCNA_00533 0.60 -0.2 545,664 - CCNA_00533 0.60 +0.0 545,673 + CCNA_00533 0.61 +0.9 545,673 + CCNA_00533 0.61 +0.2 545,691 - CCNA_00533 0.62 -1.3 545,696 + CCNA_00533 0.63 -0.1 545,704 - CCNA_00533 0.63 -0.6 545,704 - CCNA_00533 0.63 -0.8 545,707 + CCNA_00533 0.64 -0.7 545,713 - CCNA_00533 0.64 +1.0 545,734 + CCNA_00533 0.66 -0.3 545,734 - CCNA_00533 0.66 +0.2 545,742 + CCNA_00533 0.66 +0.7 545,742 + CCNA_00533 0.66 -0.5 545,742 + CCNA_00533 0.66 +0.1 545,743 + CCNA_00533 0.66 +0.1 545,750 - CCNA_00533 0.67 -1.4 545,778 - CCNA_00533 0.69 +0.1 545,780 + CCNA_00533 0.69 -0.9 545,780 + CCNA_00533 0.69 +0.9 545,785 + CCNA_00533 0.70 +1.4 545,788 - CCNA_00533 0.70 -0.3 545,788 - CCNA_00533 0.70 -1.1 545,793 - CCNA_00533 0.70 -0.7 545,797 - CCNA_00533 0.70 +1.9 545,798 - CCNA_00533 0.71 -1.1 545,803 + CCNA_00533 0.71 +0.3 545,816 - CCNA_00533 0.72 +1.6 545,838 + CCNA_00533 0.74 +1.2 545,838 + CCNA_00533 0.74 -0.9 545,838 + CCNA_00533 0.74 -1.1 545,838 + CCNA_00533 0.74 -1.2 545,838 + CCNA_00533 0.74 +2.4 545,845 + CCNA_00533 0.74 +0.9 545,846 - CCNA_00533 0.74 -0.4 545,846 - CCNA_00533 0.74 +0.8 545,846 - CCNA_00533 0.74 -1.4 545,846 - CCNA_00533 0.74 +1.8 545,848 - CCNA_00533 0.74 +2.1 545,848 - CCNA_00533 0.74 -0.1 545,883 + CCNA_00533 0.77 -0.1 545,883 + CCNA_00533 0.77 -0.2 545,883 + CCNA_00533 0.77 +0.9 545,883 + CCNA_00533 0.77 +1.4 545,891 - CCNA_00533 0.78 +1.2 545,894 + CCNA_00533 0.78 -0.2 545,902 - CCNA_00533 0.78 +0.3 545,902 - CCNA_00533 0.78 -0.1 545,912 + CCNA_00533 0.79 -1.4 545,921 - CCNA_00533 0.80 +0.1 545,930 + CCNA_00533 0.80 -0.7 545,975 + CCNA_00533 0.84 -0.6 545,978 - CCNA_00533 0.84 -1.4 545,990 + CCNA_00533 0.85 +0.8 545,996 + CCNA_00533 0.85 +0.4 545,998 - CCNA_00533 0.86 +0.5 546,013 - CCNA_00533 0.87 -0.7 546,013 - CCNA_00533 0.87 -1.2 546,019 + CCNA_00533 0.87 +2.4 546,035 - CCNA_00533 0.88 +0.0 546,036 + CCNA_00533 0.89 -2.0 546,037 - CCNA_00533 0.89 -0.4 546,037 - CCNA_00533 0.89 +2.1 546,037 - CCNA_00533 0.89 +0.3 546,051 + CCNA_00533 0.90 -0.9 546,059 - -0.2 546,059 - -0.3 546,059 - -1.1 546,059 - -0.5 546,076 - +1.0 546,091 + +0.6 546,099 - +1.4 546,144 - -1.5 546,150 + -0.8 546,150 + +0.5 546,150 + +1.1 546,150 + +0.3 546,158 - +1.5 546,158 - +0.1 546,226 + +0.3 546,282 - -0.1 546,298 + +0.6 546,304 + +1.5 546,304 + -1.2 546,304 + -0.9 546,306 + -0.6 546,306 + -1.1 546,306 + -0.4 546,312 - +0.5 546,312 - -0.3 546,314 - +2.4 546,314 - +1.1 546,316 + +0.9 546,324 - -0.6 546,324 - +0.4 546,324 - -0.3 546,328 + -1.6 546,328 + +1.1 546,328 + +0.1 546,336 - +1.2 546,336 - -0.2 546,336 - -0.6 546,345 + +0.6 546,345 + -0.5 546,345 + +1.1 546,350 + -1.6 546,350 + +0.3 546,350 + -1.3 546,350 + -0.9 546,350 + +1.7 546,350 + +2.5 546,350 + -0.7 546,350 + +0.4 546,350 + +0.4 546,358 - -0.6 546,358 - -2.3 546,358 - +1.4 546,358 - -2.0 546,358 - +0.3 546,358 - +0.1 546,398 - +0.3 546,403 - +0.3 546,433 + CCNA_00534 0.12 +1.5 546,460 + CCNA_00534 0.14 -0.6 546,460 + CCNA_00534 0.14 -1.5 546,470 + CCNA_00534 0.15 -1.2 546,499 + CCNA_00534 0.18 -0.0 546,499 + CCNA_00534 0.18 +1.7 546,545 - CCNA_00534 0.23 -0.5 546,555 + CCNA_00534 0.24 +4.0 546,582 + CCNA_00534 0.26 -0.8 546,625 + CCNA_00534 0.30 +1.1 546,625 + CCNA_00534 0.30 +1.6 546,631 - CCNA_00534 0.31 -0.3 546,633 - CCNA_00534 0.31 +0.4 546,644 - CCNA_00534 0.32 -0.1 546,647 + CCNA_00534 0.33 -0.9 546,655 - CCNA_00534 0.33 -1.3 546,660 - CCNA_00534 0.34 +0.4 546,709 - CCNA_00534 0.39 +1.1 546,735 + CCNA_00534 0.41 -0.8 546,735 - CCNA_00534 0.41 -0.1 546,743 - CCNA_00534 0.42 +1.8 546,744 - CCNA_00534 0.42 +1.9 546,765 + CCNA_00534 0.44 -1.0 546,769 + CCNA_00534 0.44 +0.9 546,769 + CCNA_00534 0.44 -0.9 546,769 + CCNA_00534 0.44 -0.4 546,772 + CCNA_00534 0.45 +0.5 546,777 - CCNA_00534 0.45 -0.1 546,904 + CCNA_00534 0.58 +1.6 546,928 - CCNA_00534 0.60 +2.4 546,931 + CCNA_00534 0.60 +0.5 546,931 + CCNA_00534 0.60 +1.3 546,935 + CCNA_00534 0.61 +0.3 546,939 - CCNA_00534 0.61 +0.5 546,939 - CCNA_00534 0.61 -1.6 546,939 - CCNA_00534 0.61 +0.5 546,950 + CCNA_00534 0.62 +1.4 547,055 + CCNA_00534 0.72 -1.0 547,066 - CCNA_00534 0.74 -1.7 547,082 + CCNA_00534 0.75 +0.2 547,082 + CCNA_00534 0.75 -0.7 547,084 + CCNA_00534 0.75 +0.6 547,090 - CCNA_00534 0.76 +0.4 547,096 - CCNA_00534 0.76 +1.6 547,151 - CCNA_00534 0.82 +1.2 547,181 + CCNA_00534 0.85 +0.4 547,181 + CCNA_00534 0.85 +0.8 547,216 - CCNA_00534 0.88 +1.2 547,240 + +0.9 547,240 + -0.7 547,240 + +0.6 547,261 - +0.0 547,261 - +1.4 547,263 + +0.3 547,263 + +0.1 547,263 - +2.6 547,268 + -1.1 547,268 + +0.8 547,276 - -1.2 547,283 - -0.2 547,289 + -0.2 547,302 - +0.4 547,322 + -0.5 547,330 - +0.7 547,330 - +1.5 547,332 + -0.0 547,339 - -1.8 547,340 - +0.6 547,344 + +1.2 547,387 + -2.0 547,388 - -0.5 547,419 - CCNA_00535 0.25 +0.3 547,500 + CCNA_00535 0.76 -2.2 547,503 + CCNA_00535 0.78 -1.8 547,615 + +3.7
Or see this region's nucleotide sequence