Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00529

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00528 and CCNA_00529 are separated by 68 nucleotidesCCNA_00529 and CCNA_00530 are separated by 349 nucleotidesCCNA_00530 and CCNA_00531 are separated by 45 nucleotides CCNA_00528: CCNA_00528 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 540,844 to 541,626 _00528 CCNA_00529: CCNA_00529 - hypothetical protein, at 541,695 to 542,231 _00529 CCNA_00530: CCNA_00530 - LSU ribosomal protein L10P, at 542,581 to 543,099 _00530 CCNA_00531: CCNA_00531 - LSU ribosomal protein L12P (L7/L12), at 543,145 to 543,528 _00531 Position (kb) 541 542 543Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 540.718 kb on + strandat 540.718 kb on + strandat 540.751 kb on + strandat 540.751 kb on + strandat 540.751 kb on + strandat 540.751 kb on + strandat 540.751 kb on + strandat 540.751 kb on + strandat 540.754 kb on - strandat 540.759 kb on - strandat 540.759 kb on - strandat 540.759 kb on - strandat 540.759 kb on - strandat 540.776 kb on + strandat 540.820 kb on + strandat 540.827 kb on + strandat 540.827 kb on + strandat 540.879 kb on - strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.900 kb on - strandat 540.967 kb on + strand, within CCNA_00528at 540.992 kb on - strandat 540.992 kb on - strand, within CCNA_00528at 541.004 kb on - strand, within CCNA_00528at 541.047 kb on + strand, within CCNA_00528at 541.047 kb on + strand, within CCNA_00528at 541.083 kb on - strand, within CCNA_00528at 541.083 kb on - strand, within CCNA_00528at 541.115 kb on + strand, within CCNA_00528at 541.123 kb on - strand, within CCNA_00528at 541.123 kb on - strand, within CCNA_00528at 541.154 kb on - strandat 541.214 kb on - strand, within CCNA_00528at 541.225 kb on - strand, within CCNA_00528at 541.240 kb on + strand, within CCNA_00528at 541.253 kb on + strand, within CCNA_00528at 541.298 kb on + strand, within CCNA_00528at 541.303 kb on + strand, within CCNA_00528at 541.303 kb on - strand, within CCNA_00528at 541.327 kb on + strand, within CCNA_00528at 541.347 kb on - strand, within CCNA_00528at 541.351 kb on + strand, within CCNA_00528at 541.351 kb on + strand, within CCNA_00528at 541.379 kb on - strand, within CCNA_00528at 541.390 kb on + strand, within CCNA_00528at 541.390 kb on + strand, within CCNA_00528at 541.390 kb on + strand, within CCNA_00528at 541.390 kb on + strand, within CCNA_00528at 541.390 kb on + strand, within CCNA_00528at 541.397 kb on + strand, within CCNA_00528at 541.398 kb on - strand, within CCNA_00528at 541.398 kb on - strand, within CCNA_00528at 541.398 kb on - strand, within CCNA_00528at 541.403 kb on + strand, within CCNA_00528at 541.403 kb on + strand, within CCNA_00528at 541.405 kb on - strand, within CCNA_00528at 541.405 kb on - strand, within CCNA_00528at 541.405 kb on - strandat 541.411 kb on - strand, within CCNA_00528at 541.416 kb on - strand, within CCNA_00528at 541.462 kb on + strand, within CCNA_00528at 541.462 kb on + strand, within CCNA_00528at 541.480 kb on - strand, within CCNA_00528at 541.480 kb on - strand, within CCNA_00528at 541.481 kb on + strand, within CCNA_00528at 541.489 kb on - strand, within CCNA_00528at 541.508 kb on - strand, within CCNA_00528at 541.540 kb on + strand, within CCNA_00528at 541.540 kb on + strand, within CCNA_00528at 541.540 kb on + strand, within CCNA_00528at 541.540 kb on + strand, within CCNA_00528at 541.548 kb on - strandat 541.557 kb on - strandat 541.578 kb on - strandat 541.582 kb on + strandat 541.582 kb on + strandat 541.583 kb on - strandat 541.594 kb on + strandat 541.652 kb on + strandat 541.652 kb on + strandat 541.652 kb on + strandat 541.652 kb on + strandat 541.657 kb on + strandat 541.657 kb on + strandat 541.657 kb on + strandat 541.657 kb on + strandat 541.665 kb on - strandat 541.673 kb on + strandat 541.674 kb on + strandat 541.682 kb on - strandat 541.707 kb on + strandat 541.707 kb on + strandat 541.707 kb on + strandat 541.710 kb on - strandat 541.715 kb on - strandat 541.731 kb on + strandat 541.749 kb on + strand, within CCNA_00529at 541.749 kb on + strand, within CCNA_00529at 541.754 kb on + strand, within CCNA_00529at 541.754 kb on + strand, within CCNA_00529at 541.754 kb on + strand, within CCNA_00529at 541.754 kb on + strand, within CCNA_00529at 541.754 kb on + strand, within CCNA_00529at 541.757 kb on - strand, within CCNA_00529at 541.759 kb on + strand, within CCNA_00529at 541.762 kb on - strand, within CCNA_00529at 541.762 kb on - strand, within CCNA_00529at 541.767 kb on - strand, within CCNA_00529at 541.783 kb on - strand, within CCNA_00529at 541.807 kb on + strand, within CCNA_00529at 541.834 kb on - strand, within CCNA_00529at 541.856 kb on + strand, within CCNA_00529at 541.877 kb on + strand, within CCNA_00529at 541.914 kb on + strand, within CCNA_00529at 541.914 kb on + strand, within CCNA_00529at 541.914 kb on + strand, within CCNA_00529at 541.928 kb on + strand, within CCNA_00529at 541.928 kb on + strand, within CCNA_00529at 541.957 kb on - strand, within CCNA_00529at 541.985 kb on + strand, within CCNA_00529at 542.001 kb on - strand, within CCNA_00529at 542.012 kb on - strand, within CCNA_00529at 542.015 kb on - strand, within CCNA_00529at 542.020 kb on - strand, within CCNA_00529at 542.020 kb on - strand, within CCNA_00529at 542.051 kb on + strand, within CCNA_00529at 542.065 kb on + strand, within CCNA_00529at 542.073 kb on - strand, within CCNA_00529at 542.079 kb on + strand, within CCNA_00529at 542.121 kb on + strand, within CCNA_00529at 542.126 kb on + strand, within CCNA_00529at 542.129 kb on - strand, within CCNA_00529at 542.129 kb on - strand, within CCNA_00529at 542.148 kb on + strand, within CCNA_00529at 542.156 kb on - strand, within CCNA_00529at 542.156 kb on - strand, within CCNA_00529at 542.174 kb on + strand, within CCNA_00529at 542.192 kb on + strandat 542.204 kb on + strandat 542.212 kb on - strandat 542.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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540,718 + +1.7
540,718 + +2.0
540,751 + +3.1
540,751 + +3.8
540,751 + +3.3
540,751 + +2.9
540,751 + +2.9
540,751 + +3.2
540,754 - -0.4
540,759 - -0.1
540,759 - -0.8
540,759 - +0.4
540,759 - -2.6
540,776 + +0.8
540,820 + +1.2
540,827 + +1.2
540,827 + +1.1
540,879 - -1.3
540,880 + -0.7
540,880 + +0.6
540,900 - -0.9
540,967 + CCNA_00528 0.16 -0.0
540,992 - +2.4
540,992 - CCNA_00528 0.19 +0.3
541,004 - CCNA_00528 0.20 -1.8
541,047 + CCNA_00528 0.26 +0.4
541,047 + CCNA_00528 0.26 +0.2
541,083 - CCNA_00528 0.31 +1.1
541,083 - CCNA_00528 0.31 -2.6
541,115 + CCNA_00528 0.35 -0.6
541,123 - CCNA_00528 0.36 +0.9
541,123 - CCNA_00528 0.36 -0.0
541,154 - +2.4
541,214 - CCNA_00528 0.47 -1.1
541,225 - CCNA_00528 0.49 +0.0
541,240 + CCNA_00528 0.51 +1.5
541,253 + CCNA_00528 0.52 +0.6
541,298 + CCNA_00528 0.58 +1.6
541,303 + CCNA_00528 0.59 +0.3
541,303 - CCNA_00528 0.59 +3.6
541,327 + CCNA_00528 0.62 +0.8
541,347 - CCNA_00528 0.64 -1.3
541,351 + CCNA_00528 0.65 +0.9
541,351 + CCNA_00528 0.65 +0.6
541,379 - CCNA_00528 0.68 +0.1
541,390 + CCNA_00528 0.70 +2.2
541,390 + CCNA_00528 0.70 +2.5
541,390 + CCNA_00528 0.70 +1.3
541,390 + CCNA_00528 0.70 -0.0
541,390 + CCNA_00528 0.70 +1.5
541,397 + CCNA_00528 0.71 -1.2
541,398 - CCNA_00528 0.71 -1.2
541,398 - CCNA_00528 0.71 -1.0
541,398 - CCNA_00528 0.71 -1.0
541,403 + CCNA_00528 0.71 +1.2
541,403 + CCNA_00528 0.71 +1.0
541,405 - CCNA_00528 0.72 -1.3
541,405 - CCNA_00528 0.72 -0.6
541,405 - +2.4
541,411 - CCNA_00528 0.72 +1.4
541,416 - CCNA_00528 0.73 +0.3
541,462 + CCNA_00528 0.79 +1.4
541,462 + CCNA_00528 0.79 +2.3
541,480 - CCNA_00528 0.81 -1.2
541,480 - CCNA_00528 0.81 -1.8
541,481 + CCNA_00528 0.81 +0.5
541,489 - CCNA_00528 0.82 +3.0
541,508 - CCNA_00528 0.85 -0.6
541,540 + CCNA_00528 0.89 +1.0
541,540 + CCNA_00528 0.89 +1.7
541,540 + CCNA_00528 0.89 +0.1
541,540 + CCNA_00528 0.89 -0.4
541,548 - -1.3
541,557 - -0.4
541,578 - -0.2
541,582 + -0.3
541,582 + -0.8
541,583 - -0.3
541,594 + +0.6
541,652 + +0.4
541,652 + +1.3
541,652 + +1.6
541,652 + +1.9
541,657 + +1.1
541,657 + -1.0
541,657 + -1.7
541,657 + +2.2
541,665 - -0.6
541,673 + +1.2
541,674 + -1.5
541,682 - -0.4
541,707 + +0.5
541,707 + +0.8
541,707 + +1.3
541,710 - +0.9
541,715 - +0.1
541,731 + -0.8
541,749 + CCNA_00529 0.10 +1.6
541,749 + CCNA_00529 0.10 +0.3
541,754 + CCNA_00529 0.11 +0.8
541,754 + CCNA_00529 0.11 +1.2
541,754 + CCNA_00529 0.11 +0.7
541,754 + CCNA_00529 0.11 +0.7
541,754 + CCNA_00529 0.11 -1.2
541,757 - CCNA_00529 0.12 +1.4
541,759 + CCNA_00529 0.12 +0.1
541,762 - CCNA_00529 0.12 +1.4
541,762 - CCNA_00529 0.12 -1.5
541,767 - CCNA_00529 0.13 -0.1
541,783 - CCNA_00529 0.16 +0.3
541,807 + CCNA_00529 0.21 +2.4
541,834 - CCNA_00529 0.26 +0.0
541,856 + CCNA_00529 0.30 +0.9
541,877 + CCNA_00529 0.34 +0.4
541,914 + CCNA_00529 0.41 +1.1
541,914 + CCNA_00529 0.41 +0.6
541,914 + CCNA_00529 0.41 +0.4
541,928 + CCNA_00529 0.43 +0.4
541,928 + CCNA_00529 0.43 +0.4
541,957 - CCNA_00529 0.49 +1.8
541,985 + CCNA_00529 0.54 -1.5
542,001 - CCNA_00529 0.57 +1.8
542,012 - CCNA_00529 0.59 +0.3
542,015 - CCNA_00529 0.60 -1.7
542,020 - CCNA_00529 0.61 -0.5
542,020 - CCNA_00529 0.61 +0.0
542,051 + CCNA_00529 0.66 +1.0
542,065 + CCNA_00529 0.69 -2.0
542,073 - CCNA_00529 0.70 -0.6
542,079 + CCNA_00529 0.72 -0.5
542,121 + CCNA_00529 0.79 +0.6
542,126 + CCNA_00529 0.80 -0.2
542,129 - CCNA_00529 0.81 -0.1
542,129 - CCNA_00529 0.81 +0.4
542,148 + CCNA_00529 0.84 -0.0
542,156 - CCNA_00529 0.86 -0.3
542,156 - CCNA_00529 0.86 +2.1
542,174 + CCNA_00529 0.89 +0.0
542,192 + +1.8
542,204 + +1.6
542,212 - +0.3
542,212 - +0.5

Or see this region's nucleotide sequence