Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00511

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00509 and CCNA_00510 overlap by 4 nucleotidesCCNA_00510 and CCNA_00511 overlap by 1 nucleotidesCCNA_00511 and CCNA_00512 are separated by 64 nucleotides CCNA_00509: CCNA_00509 - phosphoglycerate mutase family, at 523,993 to 524,526 _00509 CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 CCNA_00512: CCNA_00512 - GTP-binding protein, probable translation factor, at 525,945 to 527,045 _00512 Position (kb) 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 524.220 kb on + strand, within CCNA_00509at 524.223 kb on - strand, within CCNA_00509at 524.228 kb on - strand, within CCNA_00509at 524.282 kb on + strand, within CCNA_00509at 524.287 kb on + strand, within CCNA_00509at 524.304 kb on - strand, within CCNA_00509at 524.317 kb on - strand, within CCNA_00509at 524.331 kb on - strand, within CCNA_00509at 524.341 kb on - strand, within CCNA_00509at 524.363 kb on + strand, within CCNA_00509at 524.369 kb on + strand, within CCNA_00509at 524.409 kb on - strand, within CCNA_00509at 524.417 kb on + strand, within CCNA_00509at 524.417 kb on + strand, within CCNA_00509at 524.493 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.502 kb on - strandat 524.561 kb on + strandat 524.561 kb on + strandat 524.569 kb on - strandat 524.569 kb on - strandat 524.577 kb on - strandat 524.620 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.625 kb on + strand, within CCNA_00510at 524.638 kb on - strand, within CCNA_00510at 524.643 kb on - strand, within CCNA_00510at 524.648 kb on - strand, within CCNA_00510at 524.713 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.748 kb on - strand, within CCNA_00510at 524.795 kb on + strand, within CCNA_00510at 524.805 kb on - strand, within CCNA_00510at 524.855 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.870 kb on - strand, within CCNA_00510at 524.871 kb on - strand, within CCNA_00510at 524.895 kb on + strand, within CCNA_00510at 524.895 kb on + strand, within CCNA_00510at 524.907 kb on + strand, within CCNA_00510at 524.922 kb on + strand, within CCNA_00510at 524.979 kb on - strand, within CCNA_00510at 525.026 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.034 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.039 kb on + strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.047 kb on + strand, within CCNA_00510at 525.053 kb on + strand, within CCNA_00510at 525.066 kb on - strand, within CCNA_00510at 525.087 kb on + strand, within CCNA_00510at 525.117 kb on + strand, within CCNA_00510at 525.120 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.148 kb on - strandat 525.159 kb on + strandat 525.227 kb on - strandat 525.250 kb on + strandat 525.265 kb on + strandat 525.317 kb on + strand, within CCNA_00511at 525.330 kb on + strand, within CCNA_00511at 525.331 kb on + strand, within CCNA_00511at 525.357 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.367 kb on + strand, within CCNA_00511at 525.408 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.449 kb on - strand, within CCNA_00511at 525.472 kb on - strand, within CCNA_00511at 525.499 kb on - strand, within CCNA_00511at 525.508 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.559 kb on - strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.586 kb on - strand, within CCNA_00511at 525.587 kb on - strand, within CCNA_00511at 525.604 kb on - strand, within CCNA_00511at 525.619 kb on + strand, within CCNA_00511at 525.625 kb on + strand, within CCNA_00511at 525.669 kb on - strand, within CCNA_00511at 525.686 kb on + strand, within CCNA_00511at 525.694 kb on - strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.736 kb on - strand, within CCNA_00511at 525.736 kb on - strand, within CCNA_00511at 525.752 kb on + strand, within CCNA_00511at 525.760 kb on - strand, within CCNA_00511at 525.761 kb on - strand, within CCNA_00511at 525.795 kb on + strand, within CCNA_00511at 525.815 kb on - strandat 525.862 kb on + strandat 525.870 kb on - strandat 525.872 kb on - strandat 525.882 kb on + strandat 525.917 kb on - strandat 525.973 kb on - strandat 525.996 kb on - strandat 526.049 kb on + strandat 526.094 kb on - strand, within CCNA_00512at 526.094 kb on - strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.236 kb on + strand, within CCNA_00512at 526.244 kb on - strand, within CCNA_00512at 526.254 kb on - strand, within CCNA_00512at 526.277 kb on - strand, within CCNA_00512at 526.301 kb on - strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.339 kb on + strand, within CCNA_00512at 526.369 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.472 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.478 kb on - strand, within CCNA_00512at 526.479 kb on - strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.519 kb on + strand, within CCNA_00512at 526.558 kb on + strand, within CCNA_00512at 526.564 kb on + strand, within CCNA_00512at 526.635 kb on - strand, within CCNA_00512at 526.637 kb on - strand, within CCNA_00512at 526.788 kb on + strand, within CCNA_00512at 526.790 kb on - strand, within CCNA_00512at 526.812 kb on + strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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524,220 + CCNA_00509 0.43 -0.2
524,223 - CCNA_00509 0.43 +1.0
524,228 - CCNA_00509 0.44 -0.8
524,282 + CCNA_00509 0.54 -0.1
524,287 + CCNA_00509 0.55 -1.2
524,304 - CCNA_00509 0.58 +0.5
524,317 - CCNA_00509 0.61 +0.8
524,331 - CCNA_00509 0.63 +0.2
524,341 - CCNA_00509 0.65 +1.3
524,363 + CCNA_00509 0.69 +0.8
524,369 + CCNA_00509 0.70 -0.7
524,409 - CCNA_00509 0.78 +1.1
524,417 + CCNA_00509 0.79 -0.9
524,417 + CCNA_00509 0.79 -0.7
524,493 + +0.1
524,494 + +1.2
524,494 + -1.4
524,494 + +1.7
524,494 + -0.7
524,502 - -0.8
524,561 + +0.1
524,561 + -1.0
524,569 - +2.7
524,569 - +2.4
524,577 - +0.4
524,620 + CCNA_00510 0.14 +3.1
524,625 + CCNA_00510 0.15 -1.0
524,625 + CCNA_00510 0.15 -0.3
524,625 + CCNA_00510 0.15 -1.0
524,638 - CCNA_00510 0.17 +1.6
524,643 - CCNA_00510 0.18 -0.4
524,648 - CCNA_00510 0.18 +0.1
524,713 + CCNA_00510 0.28 +0.3
524,724 + CCNA_00510 0.30 -0.9
524,724 + CCNA_00510 0.30 -0.8
524,724 + CCNA_00510 0.30 -0.9
524,724 + CCNA_00510 0.30 -0.5
524,732 - CCNA_00510 0.31 +1.7
524,748 - CCNA_00510 0.33 +0.1
524,795 + CCNA_00510 0.40 -0.6
524,805 - CCNA_00510 0.42 +1.6
524,855 + CCNA_00510 0.49 -0.3
524,863 + CCNA_00510 0.50 -0.6
524,863 + CCNA_00510 0.50 +0.3
524,870 - CCNA_00510 0.51 -0.5
524,871 - CCNA_00510 0.51 +0.2
524,895 + CCNA_00510 0.55 -0.5
524,895 + CCNA_00510 0.55 -0.0
524,907 + CCNA_00510 0.57 -2.0
524,922 + CCNA_00510 0.59 -1.5
524,979 - CCNA_00510 0.67 +2.0
525,026 + CCNA_00510 0.74 +1.3
525,032 + CCNA_00510 0.75 +1.5
525,034 + CCNA_00510 0.75 +0.2
525,034 + CCNA_00510 0.75 -1.7
525,039 + CCNA_00510 0.76 -0.1
525,039 + CCNA_00510 0.76 -0.9
525,042 - CCNA_00510 0.77 +0.1
525,042 - CCNA_00510 0.77 -0.0
525,047 + CCNA_00510 0.77 +0.1
525,053 + CCNA_00510 0.78 -1.2
525,066 - CCNA_00510 0.80 +0.6
525,087 + CCNA_00510 0.83 +1.1
525,117 + CCNA_00510 0.88 -0.0
525,120 - CCNA_00510 0.88 -0.0
525,148 - +1.5
525,148 - +1.2
525,159 + -2.8
525,227 - +3.0
525,250 + +0.5
525,265 + +0.2
525,317 + CCNA_00511 0.17 +1.4
525,330 + CCNA_00511 0.19 -0.3
525,331 + CCNA_00511 0.19 +0.4
525,357 + CCNA_00511 0.23 +0.1
525,365 - CCNA_00511 0.24 -0.0
525,365 - CCNA_00511 0.24 -0.8
525,367 + CCNA_00511 0.25 +3.8
525,408 - CCNA_00511 0.31 +1.1
525,437 - CCNA_00511 0.35 -0.8
525,449 - CCNA_00511 0.37 -0.4
525,472 - CCNA_00511 0.40 -1.0
525,499 - CCNA_00511 0.44 +0.1
525,508 + CCNA_00511 0.45 -0.2
525,517 - CCNA_00511 0.47 -0.9
525,517 - CCNA_00511 0.47 +0.3
525,559 - CCNA_00511 0.53 +0.0
525,578 + CCNA_00511 0.56 +0.8
525,578 + CCNA_00511 0.56 -1.7
525,586 - CCNA_00511 0.57 +1.1
525,587 - CCNA_00511 0.57 +1.4
525,604 - CCNA_00511 0.59 +1.9
525,619 + CCNA_00511 0.62 +1.3
525,625 + CCNA_00511 0.62 -1.2
525,669 - CCNA_00511 0.69 +0.1
525,686 + CCNA_00511 0.71 +0.1
525,694 - CCNA_00511 0.73 +0.1
525,709 + CCNA_00511 0.75 -1.9
525,709 + CCNA_00511 0.75 -1.0
525,709 + CCNA_00511 0.75 -0.1
525,709 + CCNA_00511 0.75 -1.0
525,709 + CCNA_00511 0.75 +0.7
525,709 + CCNA_00511 0.75 +2.0
525,709 + CCNA_00511 0.75 -0.2
525,717 - CCNA_00511 0.76 +1.7
525,717 - CCNA_00511 0.76 -0.1
525,717 - CCNA_00511 0.76 -0.4
525,717 - CCNA_00511 0.76 -0.0
525,717 - CCNA_00511 0.76 +2.7
525,717 - CCNA_00511 0.76 +0.3
525,736 - CCNA_00511 0.79 +0.3
525,736 - CCNA_00511 0.79 -0.4
525,752 + CCNA_00511 0.81 -0.0
525,760 - CCNA_00511 0.82 -0.1
525,761 - CCNA_00511 0.82 -0.9
525,795 + CCNA_00511 0.87 +0.6
525,815 - -0.0
525,862 + +0.5
525,870 - +0.2
525,872 - +0.4
525,882 + -0.2
525,917 - +1.8
525,973 - +3.6
525,996 - -0.4
526,049 + -0.5
526,094 - CCNA_00512 0.14 +2.8
526,094 - CCNA_00512 0.14 +2.0
526,212 + CCNA_00512 0.24 +1.3
526,212 + CCNA_00512 0.24 +1.5
526,236 + CCNA_00512 0.26 +2.9
526,244 - CCNA_00512 0.27 +3.3
526,254 - CCNA_00512 0.28 +2.5
526,277 - CCNA_00512 0.30 +3.6
526,301 - CCNA_00512 0.32 +2.4
526,339 + CCNA_00512 0.36 +0.8
526,339 + CCNA_00512 0.36 +1.7
526,369 + CCNA_00512 0.39 +1.3
526,465 + CCNA_00512 0.47 -1.4
526,465 + CCNA_00512 0.47 +1.4
526,472 - CCNA_00512 0.48 +2.4
526,473 - CCNA_00512 0.48 +2.4
526,473 - CCNA_00512 0.48 +1.6
526,473 - CCNA_00512 0.48 +1.4
526,478 - CCNA_00512 0.48 +3.3
526,479 - CCNA_00512 0.49 +0.4
526,519 + CCNA_00512 0.52 -0.2
526,519 + CCNA_00512 0.52 +0.3
526,558 + CCNA_00512 0.56 +1.1
526,564 + CCNA_00512 0.56 +0.9
526,635 - CCNA_00512 0.63 +1.8
526,637 - CCNA_00512 0.63 +3.2
526,788 + CCNA_00512 0.77 +2.3
526,790 - CCNA_00512 0.77 +2.8
526,812 + CCNA_00512 0.79 +0.1
526,873 + CCNA_00512 0.84 +0.4

Or see this region's nucleotide sequence