Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00443

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00442 and CCNA_00443 are separated by 3 nucleotidesCCNA_00443 and CCNA_00444 overlap by 1 nucleotidesCCNA_00444 and CCNA_00445 overlap by 1 nucleotides CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525 _00442 CCNA_00443: CCNA_00443 - chemotaxis protein cheW, at 450,529 to 450,996 _00443 CCNA_00444: CCNA_00444 - chemotaxis protein methyltransferase, at 450,996 to 451,877 _00444 CCNA_00445: CCNA_00445 - receiver domain-glutamate methylesterase cheBI, at 451,877 to 452,911 _00445 Position (kb) 450 451Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 449.606 kb on + strand, within CCNA_00442at 449.607 kb on + strand, within CCNA_00442at 449.634 kb on + strand, within CCNA_00442at 449.654 kb on + strand, within CCNA_00442at 449.654 kb on + strand, within CCNA_00442at 449.659 kb on + strand, within CCNA_00442at 449.662 kb on - strand, within CCNA_00442at 449.662 kb on - strand, within CCNA_00442at 449.672 kb on + strand, within CCNA_00442at 449.693 kb on + strand, within CCNA_00442at 449.701 kb on - strand, within CCNA_00442at 449.701 kb on - strand, within CCNA_00442at 449.749 kb on + strand, within CCNA_00442at 449.749 kb on + strand, within CCNA_00442at 449.757 kb on - strand, within CCNA_00442at 449.757 kb on - strand, within CCNA_00442at 449.765 kb on + strand, within CCNA_00442at 449.800 kb on + strand, within CCNA_00442at 449.801 kb on - strand, within CCNA_00442at 449.839 kb on - strand, within CCNA_00442at 449.841 kb on + strand, within CCNA_00442at 449.858 kb on + strand, within CCNA_00442at 449.858 kb on + strand, within CCNA_00442at 449.886 kb on - strand, within CCNA_00442at 449.907 kb on + strand, within CCNA_00442at 449.961 kb on - strand, within CCNA_00442at 449.977 kb on + strand, within CCNA_00442at 449.977 kb on + strand, within CCNA_00442at 449.977 kb on + strand, within CCNA_00442at 449.977 kb on + strand, within CCNA_00442at 449.977 kb on + strand, within CCNA_00442at 449.982 kb on + strand, within CCNA_00442at 449.985 kb on - strand, within CCNA_00442at 449.985 kb on - strand, within CCNA_00442at 449.985 kb on - strand, within CCNA_00442at 449.988 kb on + strand, within CCNA_00442at 450.016 kb on - strand, within CCNA_00442at 450.019 kb on + strand, within CCNA_00442at 450.019 kb on + strand, within CCNA_00442at 450.027 kb on - strand, within CCNA_00442at 450.054 kb on + strand, within CCNA_00442at 450.055 kb on + strand, within CCNA_00442at 450.056 kb on + strand, within CCNA_00442at 450.062 kb on - strand, within CCNA_00442at 450.062 kb on - strand, within CCNA_00442at 450.079 kb on + strand, within CCNA_00442at 450.099 kb on + strand, within CCNA_00442at 450.192 kb on - strand, within CCNA_00442at 450.227 kb on + strand, within CCNA_00442at 450.229 kb on - strand, within CCNA_00442at 450.237 kb on + strand, within CCNA_00442at 450.237 kb on + strand, within CCNA_00442at 450.259 kb on + strand, within CCNA_00442at 450.280 kb on - strand, within CCNA_00442at 450.285 kb on + strand, within CCNA_00442at 450.300 kb on - strandat 450.321 kb on - strandat 450.332 kb on + strandat 450.332 kb on + strandat 450.342 kb on + strandat 450.342 kb on + strandat 450.350 kb on - strandat 450.360 kb on - strandat 450.360 kb on - strandat 450.370 kb on - strandat 450.382 kb on - strandat 450.382 kb on - strandat 450.385 kb on + strandat 450.392 kb on - strandat 450.393 kb on - strandat 450.430 kb on + strandat 450.430 kb on + strandat 450.433 kb on - strandat 450.438 kb on - strandat 450.494 kb on + strandat 450.500 kb on + strandat 450.500 kb on + strandat 450.508 kb on - strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.525 kb on + strandat 450.533 kb on - strandat 450.533 kb on - strandat 450.533 kb on - strandat 450.559 kb on + strandat 450.578 kb on + strand, within CCNA_00443at 450.595 kb on + strand, within CCNA_00443at 450.597 kb on - strand, within CCNA_00443at 450.605 kb on - strand, within CCNA_00443at 450.612 kb on + strand, within CCNA_00443at 450.620 kb on - strand, within CCNA_00443at 450.620 kb on - strand, within CCNA_00443at 450.622 kb on - strand, within CCNA_00443at 450.631 kb on + strand, within CCNA_00443at 450.688 kb on + strand, within CCNA_00443at 450.709 kb on + strand, within CCNA_00443at 450.741 kb on + strand, within CCNA_00443at 450.783 kb on - strand, within CCNA_00443at 450.812 kb on + strand, within CCNA_00443at 450.814 kb on - strand, within CCNA_00443at 450.833 kb on + strand, within CCNA_00443at 450.839 kb on - strand, within CCNA_00443at 450.867 kb on + strand, within CCNA_00443at 450.872 kb on + strand, within CCNA_00443at 450.893 kb on + strand, within CCNA_00443at 450.902 kb on + strand, within CCNA_00443at 450.923 kb on + strand, within CCNA_00443at 450.952 kb on - strandat 450.976 kb on - strandat 450.976 kb on - strandat 450.981 kb on + strandat 450.981 kb on + strandat 450.989 kb on - strandat 451.018 kb on + strandat 451.018 kb on + strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.092 kb on - strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.127 kb on + strand, within CCNA_00444at 451.129 kb on - strand, within CCNA_00444at 451.142 kb on + strand, within CCNA_00444at 451.145 kb on - strand, within CCNA_00444at 451.150 kb on - strand, within CCNA_00444at 451.174 kb on + strand, within CCNA_00444at 451.182 kb on - strand, within CCNA_00444at 451.199 kb on + strand, within CCNA_00444at 451.234 kb on - strand, within CCNA_00444at 451.252 kb on - strand, within CCNA_00444at 451.257 kb on + strand, within CCNA_00444at 451.265 kb on - strand, within CCNA_00444at 451.279 kb on - strand, within CCNA_00444at 451.300 kb on + strand, within CCNA_00444at 451.309 kb on - strand, within CCNA_00444at 451.331 kb on - strand, within CCNA_00444at 451.347 kb on + strand, within CCNA_00444at 451.416 kb on + strand, within CCNA_00444at 451.417 kb on + strand, within CCNA_00444at 451.425 kb on + strand, within CCNA_00444at 451.425 kb on - strand, within CCNA_00444at 451.433 kb on - strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.535 kb on + strand, within CCNA_00444at 451.543 kb on - strand, within CCNA_00444at 451.645 kb on + strand, within CCNA_00444at 451.653 kb on - strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.667 kb on - strand, within CCNA_00444at 451.672 kb on - strand, within CCNA_00444at 451.710 kb on + strand, within CCNA_00444at 451.720 kb on + strand, within CCNA_00444at 451.764 kb on - strand, within CCNA_00444at 451.802 kb on + strandat 451.841 kb on - strandat 451.858 kb on + strandat 451.859 kb on + strandat 451.866 kb on - strandat 451.940 kb on + strandat 451.940 kb on + strandat 451.942 kb on + strandat 451.942 kb on + strandat 451.947 kb on + strandat 451.948 kb on - strandat 451.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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449,606 + CCNA_00442 0.60 +2.9
449,607 + CCNA_00442 0.60 +0.9
449,634 + CCNA_00442 0.61 +2.2
449,654 + CCNA_00442 0.62 +2.0
449,654 + CCNA_00442 0.62 +3.4
449,659 + CCNA_00442 0.62 +3.4
449,662 - CCNA_00442 0.62 -0.7
449,662 - CCNA_00442 0.62 -0.5
449,672 + CCNA_00442 0.63 +2.0
449,693 + CCNA_00442 0.64 +3.1
449,701 - CCNA_00442 0.64 +0.3
449,701 - CCNA_00442 0.64 +1.6
449,749 + CCNA_00442 0.66 +3.0
449,749 + CCNA_00442 0.66 +3.0
449,757 - CCNA_00442 0.66 -1.3
449,757 - CCNA_00442 0.66 +0.0
449,765 + CCNA_00442 0.67 +2.7
449,800 + CCNA_00442 0.68 +3.6
449,801 - CCNA_00442 0.68 +0.7
449,839 - CCNA_00442 0.70 +0.7
449,841 + CCNA_00442 0.70 +2.9
449,858 + CCNA_00442 0.71 +2.8
449,858 + CCNA_00442 0.71 +2.5
449,886 - CCNA_00442 0.72 +0.7
449,907 + CCNA_00442 0.73 +3.3
449,961 - CCNA_00442 0.75 +0.5
449,977 + CCNA_00442 0.76 +3.1
449,977 + CCNA_00442 0.76 +2.9
449,977 + CCNA_00442 0.76 +3.4
449,977 + CCNA_00442 0.76 +3.1
449,977 + CCNA_00442 0.76 +3.5
449,982 + CCNA_00442 0.76 +2.8
449,985 - CCNA_00442 0.76 +0.5
449,985 - CCNA_00442 0.76 -0.1
449,985 - CCNA_00442 0.76 +0.7
449,988 + CCNA_00442 0.76 +3.8
450,016 - CCNA_00442 0.78 -0.1
450,019 + CCNA_00442 0.78 +3.5
450,019 + CCNA_00442 0.78 +3.8
450,027 - CCNA_00442 0.78 -0.5
450,054 + CCNA_00442 0.79 +3.7
450,055 + CCNA_00442 0.79 +3.6
450,056 + CCNA_00442 0.79 +2.5
450,062 - CCNA_00442 0.80 +1.5
450,062 - CCNA_00442 0.80 +2.0
450,079 + CCNA_00442 0.80 +3.5
450,099 + CCNA_00442 0.81 +3.4
450,192 - CCNA_00442 0.85 +1.2
450,227 + CCNA_00442 0.87 +3.4
450,229 - CCNA_00442 0.87 +2.1
450,237 + CCNA_00442 0.87 +3.4
450,237 + CCNA_00442 0.87 +2.8
450,259 + CCNA_00442 0.88 +3.1
450,280 - CCNA_00442 0.89 -1.4
450,285 + CCNA_00442 0.89 +2.9
450,300 - -0.2
450,321 - -0.4
450,332 + +3.7
450,332 + +3.0
450,342 + +2.4
450,342 + +3.3
450,350 - -0.3
450,360 - +1.1
450,360 - +3.5
450,370 - +0.1
450,382 - -0.9
450,382 - -0.6
450,385 + +3.3
450,392 - +1.7
450,393 - -0.8
450,430 + +3.7
450,430 + +3.4
450,433 - -1.8
450,438 - -0.8
450,494 + +1.6
450,500 + +2.3
450,500 + +2.5
450,508 - -0.5
450,525 + +3.4
450,525 + +2.9
450,525 + +2.9
450,525 + +3.1
450,533 - +0.7
450,533 - +4.1
450,533 - -1.3
450,559 + +2.7
450,578 + CCNA_00443 0.10 +2.6
450,595 + CCNA_00443 0.14 +3.2
450,597 - CCNA_00443 0.15 -1.1
450,605 - CCNA_00443 0.16 -0.4
450,612 + CCNA_00443 0.18 +1.0
450,620 - CCNA_00443 0.19 -0.2
450,620 - CCNA_00443 0.19 -0.4
450,622 - CCNA_00443 0.20 +0.4
450,631 + CCNA_00443 0.22 +2.4
450,688 + CCNA_00443 0.34 +2.6
450,709 + CCNA_00443 0.38 +3.0
450,741 + CCNA_00443 0.45 +1.1
450,783 - CCNA_00443 0.54 -0.4
450,812 + CCNA_00443 0.60 +2.8
450,814 - CCNA_00443 0.61 -1.7
450,833 + CCNA_00443 0.65 +2.6
450,839 - CCNA_00443 0.66 -0.0
450,867 + CCNA_00443 0.72 +3.3
450,872 + CCNA_00443 0.73 +3.4
450,893 + CCNA_00443 0.78 +2.1
450,902 + CCNA_00443 0.80 +2.4
450,923 + CCNA_00443 0.84 +2.3
450,952 - -2.0
450,976 - +0.6
450,976 - +0.2
450,981 + +3.1
450,981 + +2.5
450,989 - -0.6
451,018 + +2.5
451,018 + +2.5
451,026 - -0.8
451,026 - -1.0
451,026 - -0.3
451,092 - CCNA_00444 0.11 -0.8
451,094 + CCNA_00444 0.11 +3.0
451,094 + CCNA_00444 0.11 +2.5
451,094 + CCNA_00444 0.11 +3.3
451,094 + CCNA_00444 0.11 +2.9
451,094 + CCNA_00444 0.11 +2.6
451,102 - CCNA_00444 0.12 -0.7
451,102 - CCNA_00444 0.12 +1.0
451,102 - CCNA_00444 0.12 +0.5
451,102 - CCNA_00444 0.12 +0.4
451,103 - CCNA_00444 0.12 +0.9
451,103 - CCNA_00444 0.12 +0.7
451,127 + CCNA_00444 0.15 +3.2
451,129 - CCNA_00444 0.15 -0.8
451,142 + CCNA_00444 0.17 +1.4
451,145 - CCNA_00444 0.17 +4.1
451,150 - CCNA_00444 0.17 +0.1
451,174 + CCNA_00444 0.20 +2.2
451,182 - CCNA_00444 0.21 +2.1
451,199 + CCNA_00444 0.23 +1.9
451,234 - CCNA_00444 0.27 +1.2
451,252 - CCNA_00444 0.29 -0.9
451,257 + CCNA_00444 0.30 +2.4
451,265 - CCNA_00444 0.30 -1.1
451,279 - CCNA_00444 0.32 -0.1
451,300 + CCNA_00444 0.34 +3.2
451,309 - CCNA_00444 0.35 +1.9
451,331 - CCNA_00444 0.38 -0.5
451,347 + CCNA_00444 0.40 +1.9
451,416 + CCNA_00444 0.48 +2.8
451,417 + CCNA_00444 0.48 +3.6
451,425 + CCNA_00444 0.49 +2.6
451,425 - CCNA_00444 0.49 +0.4
451,433 - CCNA_00444 0.50 -0.5
451,452 + CCNA_00444 0.52 +3.6
451,452 + CCNA_00444 0.52 +3.1
451,460 - CCNA_00444 0.53 +0.6
451,460 - CCNA_00444 0.53 -0.4
451,486 + CCNA_00444 0.56 +2.3
451,486 + CCNA_00444 0.56 +3.1
451,535 + CCNA_00444 0.61 +2.7
451,543 - CCNA_00444 0.62 +0.6
451,645 + CCNA_00444 0.74 +3.2
451,653 - CCNA_00444 0.74 -0.7
451,664 + CCNA_00444 0.76 +2.5
451,664 + CCNA_00444 0.76 +2.4
451,667 - CCNA_00444 0.76 +0.4
451,672 - CCNA_00444 0.77 +1.2
451,710 + CCNA_00444 0.81 +3.4
451,720 + CCNA_00444 0.82 +3.3
451,764 - CCNA_00444 0.87 +0.8
451,802 + +3.9
451,841 - +0.5
451,858 + +3.6
451,859 + +2.7
451,866 - +1.0
451,940 + +2.3
451,940 + +2.0
451,942 + +2.6
451,942 + +2.9
451,947 + +2.6
451,948 - -1.3
451,950 - -0.2

Or see this region's nucleotide sequence