Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00439

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00437 and CCNA_00438 are separated by 211 nucleotidesCCNA_00438 and CCNA_00439 are separated by 296 nucleotidesCCNA_00439 and CCNA_00440 overlap by 1 nucleotidesCCNA_00440 and CCNA_00441 overlap by 4 nucleotidesCCNA_00441 and CCNA_00442 are separated by 69 nucleotides CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677 _00437 CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200 _00438 CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518 _00439 CCNA_00440: CCNA_00440 - STAS domain protein, at 447,518 to 447,805 _00440 CCNA_00441: CCNA_00441 - chemotaxis receiver domain protein cheYI, at 447,802 to 448,167 _00441 CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525 _00442 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 444.503 kb on + strand, within CCNA_00437at 444.511 kb on - strand, within CCNA_00437at 444.513 kb on + strand, within CCNA_00437at 444.520 kb on + strandat 444.530 kb on - strandat 444.541 kb on - strandat 444.686 kb on + strandat 444.694 kb on - strandat 444.708 kb on - strandat 444.708 kb on - strandat 444.710 kb on - strandat 444.715 kb on + strandat 444.723 kb on - strandat 444.723 kb on - strandat 444.738 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.766 kb on + strandat 444.766 kb on - strandat 444.827 kb on - strandat 444.827 kb on - strandat 444.832 kb on - strandat 444.848 kb on - strandat 444.857 kb on - strandat 444.858 kb on - strandat 444.985 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.013 kb on + strand, within CCNA_00438at 445.014 kb on - strand, within CCNA_00438at 445.021 kb on - strand, within CCNA_00438at 445.051 kb on - strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.083 kb on - strand, within CCNA_00438at 445.092 kb on + strand, within CCNA_00438at 445.108 kb on - strand, within CCNA_00438at 445.116 kb on - strand, within CCNA_00438at 445.141 kb on + strand, within CCNA_00438at 445.202 kb on - strandat 445.202 kb on - strandat 445.359 kb on - strandat 445.376 kb on - strandat 445.378 kb on + strandat 445.491 kb on + strandat 445.499 kb on - strandat 445.499 kb on - strandat 445.519 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.567 kb on + strandat 445.575 kb on - strandat 445.599 kb on - strandat 445.611 kb on + strandat 445.650 kb on + strandat 445.684 kb on - strandat 445.691 kb on - strandat 445.774 kb on + strand, within CCNA_00439at 445.782 kb on - strand, within CCNA_00439at 445.782 kb on - strand, within CCNA_00439at 445.790 kb on + strand, within CCNA_00439at 445.832 kb on + strand, within CCNA_00439at 445.840 kb on - strand, within CCNA_00439at 445.883 kb on + strand, within CCNA_00439at 445.906 kb on + strand, within CCNA_00439at 445.906 kb on + strand, within CCNA_00439at 445.932 kb on - strand, within CCNA_00439at 445.952 kb on - strand, within CCNA_00439at 445.955 kb on + strand, within CCNA_00439at 445.962 kb on + strand, within CCNA_00439at 445.975 kb on - strand, within CCNA_00439at 445.999 kb on + strand, within CCNA_00439at 445.999 kb on + strand, within CCNA_00439at 446.024 kb on - strand, within CCNA_00439at 446.045 kb on + strand, within CCNA_00439at 446.051 kb on + strand, within CCNA_00439at 446.070 kb on - strand, within CCNA_00439at 446.070 kb on - strand, within CCNA_00439at 446.090 kb on + strand, within CCNA_00439at 446.096 kb on + strand, within CCNA_00439at 446.103 kb on + strand, within CCNA_00439at 446.108 kb on + strand, within CCNA_00439at 446.108 kb on + strand, within CCNA_00439at 446.121 kb on - strand, within CCNA_00439at 446.147 kb on + strand, within CCNA_00439at 446.162 kb on + strand, within CCNA_00439at 446.169 kb on + strand, within CCNA_00439at 446.240 kb on + strand, within CCNA_00439at 446.247 kb on + strand, within CCNA_00439at 446.248 kb on - strand, within CCNA_00439at 446.252 kb on + strand, within CCNA_00439at 446.255 kb on - strand, within CCNA_00439at 446.284 kb on + strand, within CCNA_00439at 446.310 kb on + strand, within CCNA_00439at 446.312 kb on + strand, within CCNA_00439at 446.312 kb on + strand, within CCNA_00439at 446.344 kb on - strand, within CCNA_00439at 446.349 kb on - strand, within CCNA_00439at 446.349 kb on - strand, within CCNA_00439at 446.349 kb on - strand, within CCNA_00439at 446.349 kb on - strand, within CCNA_00439at 446.381 kb on + strand, within CCNA_00439at 446.389 kb on - strand, within CCNA_00439at 446.402 kb on + strand, within CCNA_00439at 446.410 kb on - strand, within CCNA_00439at 446.451 kb on + strand, within CCNA_00439at 446.473 kb on + strand, within CCNA_00439at 446.483 kb on + strand, within CCNA_00439at 446.483 kb on + strand, within CCNA_00439at 446.493 kb on + strand, within CCNA_00439at 446.550 kb on + strand, within CCNA_00439at 446.552 kb on + strand, within CCNA_00439at 446.569 kb on - strand, within CCNA_00439at 446.570 kb on - strand, within CCNA_00439at 446.668 kb on + strand, within CCNA_00439at 446.668 kb on + strand, within CCNA_00439at 446.673 kb on + strand, within CCNA_00439at 446.718 kb on - strand, within CCNA_00439at 446.746 kb on - strand, within CCNA_00439at 446.765 kb on - strand, within CCNA_00439at 446.822 kb on - strand, within CCNA_00439at 446.824 kb on + strand, within CCNA_00439at 446.829 kb on + strand, within CCNA_00439at 446.837 kb on - strand, within CCNA_00439at 446.847 kb on + strand, within CCNA_00439at 446.862 kb on + strand, within CCNA_00439at 446.865 kb on - strand, within CCNA_00439at 446.865 kb on - strand, within CCNA_00439at 446.887 kb on - strand, within CCNA_00439at 446.944 kb on - strand, within CCNA_00439at 446.951 kb on + strand, within CCNA_00439at 446.968 kb on - strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 447.002 kb on - strand, within CCNA_00439at 447.006 kb on + strand, within CCNA_00439at 447.033 kb on - strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.042 kb on + strand, within CCNA_00439at 447.043 kb on - strand, within CCNA_00439at 447.043 kb on - strand, within CCNA_00439at 447.050 kb on + strand, within CCNA_00439at 447.147 kb on + strand, within CCNA_00439at 447.183 kb on - strand, within CCNA_00439at 447.185 kb on + strand, within CCNA_00439at 447.192 kb on + strand, within CCNA_00439at 447.192 kb on + strand, within CCNA_00439at 447.200 kb on - strand, within CCNA_00439at 447.206 kb on + strand, within CCNA_00439at 447.231 kb on - strand, within CCNA_00439at 447.274 kb on - strand, within CCNA_00439at 447.274 kb on - strand, within CCNA_00439at 447.301 kb on - strand, within CCNA_00439at 447.309 kb on - strand, within CCNA_00439at 447.328 kb on + strandat 447.328 kb on + strandat 447.340 kb on + strandat 447.353 kb on + strandat 447.362 kb on - strandat 447.373 kb on + strandat 447.384 kb on + strandat 447.389 kb on + strandat 447.420 kb on + strandat 447.453 kb on + strandat 447.456 kb on - strandat 447.485 kb on + strandat 447.615 kb on - strand, within CCNA_00440at 447.621 kb on - strand, within CCNA_00440at 447.623 kb on + strand, within CCNA_00440at 447.659 kb on + strand, within CCNA_00440at 447.667 kb on - strand, within CCNA_00440at 447.680 kb on + strand, within CCNA_00440at 447.695 kb on + strand, within CCNA_00440at 447.722 kb on + strand, within CCNA_00440at 447.729 kb on + strand, within CCNA_00440at 447.767 kb on - strand, within CCNA_00440at 447.849 kb on - strand, within CCNA_00441at 447.878 kb on + strand, within CCNA_00441at 447.884 kb on + strand, within CCNA_00441at 447.896 kb on - strand, within CCNA_00441at 447.903 kb on - strand, within CCNA_00441at 447.904 kb on + strand, within CCNA_00441at 447.922 kb on + strand, within CCNA_00441at 447.922 kb on - strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.993 kb on + strand, within CCNA_00441at 448.017 kb on + strand, within CCNA_00441at 448.037 kb on + strand, within CCNA_00441at 448.097 kb on + strand, within CCNA_00441at 448.142 kb on + strandat 448.162 kb on + strandat 448.162 kb on + strandat 448.162 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.183 kb on + strandat 448.189 kb on - strandat 448.189 kb on - strandat 448.212 kb on - strandat 448.220 kb on + strandat 448.228 kb on - strandat 448.244 kb on + strandat 448.244 kb on + strandat 448.253 kb on + strandat 448.254 kb on + strandat 448.254 kb on + strandat 448.260 kb on + strandat 448.299 kb on + strandat 448.307 kb on - strandat 448.312 kb on + strandat 448.320 kb on - strandat 448.340 kb on + strandat 448.362 kb on + strandat 448.365 kb on - strandat 448.365 kb on - strandat 448.370 kb on - strandat 448.414 kb on - strandat 448.455 kb on - strandat 448.457 kb on + strandat 448.482 kb on - strand, within CCNA_00442

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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444,503 + CCNA_00437 0.89 -0.9
444,511 - CCNA_00437 0.90 -1.3
444,513 + CCNA_00437 0.90 -1.6
444,520 + -1.5
444,530 - -1.6
444,541 - +0.1
444,686 + +0.1
444,694 - -0.4
444,708 - -1.6
444,708 - -0.1
444,710 - -1.2
444,715 + -0.2
444,723 - -1.0
444,723 - +1.9
444,738 + +0.4
444,758 + -0.9
444,758 + -0.2
444,758 + +2.0
444,766 + +4.0
444,766 - +0.2
444,827 - +0.2
444,827 - -0.9
444,832 - +1.0
444,848 - -1.3
444,857 - +2.2
444,858 - +1.7
444,985 + CCNA_00438 0.31 +0.4
445,006 + CCNA_00438 0.38 +0.2
445,006 + CCNA_00438 0.38 +0.2
445,013 + CCNA_00438 0.40 -1.1
445,014 - CCNA_00438 0.40 +3.4
445,021 - CCNA_00438 0.42 +2.9
445,051 - CCNA_00438 0.52 +3.2
445,055 + CCNA_00438 0.53 +0.4
445,055 + CCNA_00438 0.53 -0.2
445,063 - CCNA_00438 0.56 +1.6
445,063 - CCNA_00438 0.56 +3.3
445,083 - CCNA_00438 0.62 +2.5
445,092 + CCNA_00438 0.65 +2.0
445,108 - CCNA_00438 0.70 +1.8
445,116 - CCNA_00438 0.73 +2.7
445,141 + CCNA_00438 0.81 -1.5
445,202 - +1.1
445,202 - -1.9
445,359 - -0.9
445,376 - -1.2
445,378 + -1.7
445,491 + +0.0
445,499 - +1.2
445,499 - -0.1
445,519 + +1.5
445,526 + +1.3
445,526 + +1.3
445,526 + +1.3
445,526 + +1.9
445,526 + +3.7
445,534 - -0.1
445,534 - -0.9
445,534 - -0.6
445,534 - +0.1
445,534 - +0.6
445,567 + +1.6
445,575 - -1.1
445,599 - -0.1
445,611 + +1.0
445,650 + +2.0
445,684 - +0.3
445,691 - +0.6
445,774 + CCNA_00439 0.14 +1.0
445,782 - CCNA_00439 0.14 -0.8
445,782 - CCNA_00439 0.14 -0.7
445,790 + CCNA_00439 0.14 +1.6
445,832 + CCNA_00439 0.17 +2.4
445,840 - CCNA_00439 0.17 -0.7
445,883 + CCNA_00439 0.19 +2.2
445,906 + CCNA_00439 0.20 +3.8
445,906 + CCNA_00439 0.20 +1.2
445,932 - CCNA_00439 0.22 +0.3
445,952 - CCNA_00439 0.23 -0.2
445,955 + CCNA_00439 0.23 +2.7
445,962 + CCNA_00439 0.23 +2.8
445,975 - CCNA_00439 0.24 +0.6
445,999 + CCNA_00439 0.25 +2.4
445,999 + CCNA_00439 0.25 +3.0
446,024 - CCNA_00439 0.26 +0.5
446,045 + CCNA_00439 0.27 +2.4
446,051 + CCNA_00439 0.27 +2.3
446,070 - CCNA_00439 0.28 +0.6
446,070 - CCNA_00439 0.28 -1.9
446,090 + CCNA_00439 0.29 +0.9
446,096 + CCNA_00439 0.30 +2.8
446,103 + CCNA_00439 0.30 +1.9
446,108 + CCNA_00439 0.30 +1.7
446,108 + CCNA_00439 0.30 +2.8
446,121 - CCNA_00439 0.31 -1.1
446,147 + CCNA_00439 0.32 +2.7
446,162 + CCNA_00439 0.33 +1.4
446,169 + CCNA_00439 0.33 +2.3
446,240 + CCNA_00439 0.37 +2.2
446,247 + CCNA_00439 0.37 +3.4
446,248 - CCNA_00439 0.37 -0.4
446,252 + CCNA_00439 0.37 +2.7
446,255 - CCNA_00439 0.37 -1.0
446,284 + CCNA_00439 0.39 +2.8
446,310 + CCNA_00439 0.40 +1.8
446,312 + CCNA_00439 0.40 +2.7
446,312 + CCNA_00439 0.40 +2.8
446,344 - CCNA_00439 0.42 -1.9
446,349 - CCNA_00439 0.42 -1.0
446,349 - CCNA_00439 0.42 -1.2
446,349 - CCNA_00439 0.42 -2.0
446,349 - CCNA_00439 0.42 -0.5
446,381 + CCNA_00439 0.44 +1.8
446,389 - CCNA_00439 0.44 -1.6
446,402 + CCNA_00439 0.45 +2.8
446,410 - CCNA_00439 0.45 -0.4
446,451 + CCNA_00439 0.47 +3.4
446,473 + CCNA_00439 0.48 +3.5
446,483 + CCNA_00439 0.49 +2.7
446,483 + CCNA_00439 0.49 +2.7
446,493 + CCNA_00439 0.49 +2.4
446,550 + CCNA_00439 0.52 +3.3
446,552 + CCNA_00439 0.52 +2.5
446,569 - CCNA_00439 0.53 +0.9
446,570 - CCNA_00439 0.53 +1.3
446,668 + CCNA_00439 0.58 +2.2
446,668 + CCNA_00439 0.58 +2.3
446,673 + CCNA_00439 0.58 +2.7
446,718 - CCNA_00439 0.60 -0.7
446,746 - CCNA_00439 0.62 +0.3
446,765 - CCNA_00439 0.63 -0.7
446,822 - CCNA_00439 0.66 +0.1
446,824 + CCNA_00439 0.66 +2.9
446,829 + CCNA_00439 0.66 +3.4
446,837 - CCNA_00439 0.66 +0.3
446,847 + CCNA_00439 0.67 +3.8
446,862 + CCNA_00439 0.68 +3.4
446,865 - CCNA_00439 0.68 +0.1
446,865 - CCNA_00439 0.68 +1.1
446,887 - CCNA_00439 0.69 -0.6
446,944 - CCNA_00439 0.72 -0.3
446,951 + CCNA_00439 0.72 +2.3
446,968 - CCNA_00439 0.73 -1.4
446,994 + CCNA_00439 0.74 +2.1
446,994 + CCNA_00439 0.74 +3.9
446,994 + CCNA_00439 0.74 +2.9
447,002 - CCNA_00439 0.74 -1.5
447,006 + CCNA_00439 0.75 +2.7
447,033 - CCNA_00439 0.76 +2.5
447,035 + CCNA_00439 0.76 +2.9
447,035 + CCNA_00439 0.76 +3.5
447,035 + CCNA_00439 0.76 +2.9
447,035 + CCNA_00439 0.76 +2.9
447,042 + CCNA_00439 0.76 +2.7
447,043 - CCNA_00439 0.76 -0.4
447,043 - CCNA_00439 0.76 -1.7
447,050 + CCNA_00439 0.77 +2.8
447,147 + CCNA_00439 0.82 +3.0
447,183 - CCNA_00439 0.83 -0.4
447,185 + CCNA_00439 0.83 +3.1
447,192 + CCNA_00439 0.84 +3.3
447,192 + CCNA_00439 0.84 +3.9
447,200 - CCNA_00439 0.84 -1.3
447,206 + CCNA_00439 0.85 +3.6
447,231 - CCNA_00439 0.86 -0.4
447,274 - CCNA_00439 0.88 +0.6
447,274 - CCNA_00439 0.88 -1.3
447,301 - CCNA_00439 0.89 -1.4
447,309 - CCNA_00439 0.90 +0.9
447,328 + +3.3
447,328 + +3.1
447,340 + +2.1
447,353 + +1.6
447,362 - -0.2
447,373 + +3.0
447,384 + +3.5
447,389 + +3.5
447,420 + +2.6
447,453 + +3.0
447,456 - -0.2
447,485 + +3.4
447,615 - CCNA_00440 0.34 +0.6
447,621 - CCNA_00440 0.36 -0.7
447,623 + CCNA_00440 0.36 +3.1
447,659 + CCNA_00440 0.49 +3.3
447,667 - CCNA_00440 0.52 -1.3
447,680 + CCNA_00440 0.56 +3.4
447,695 + CCNA_00440 0.61 +3.7
447,722 + CCNA_00440 0.71 +3.1
447,729 + CCNA_00440 0.73 +2.9
447,767 - CCNA_00440 0.86 -0.7
447,849 - CCNA_00441 0.13 -1.1
447,878 + CCNA_00441 0.21 +3.0
447,884 + CCNA_00441 0.22 +3.2
447,896 - CCNA_00441 0.26 -0.0
447,903 - CCNA_00441 0.28 -1.2
447,904 + CCNA_00441 0.28 +3.5
447,922 + CCNA_00441 0.33 +3.3
447,922 - CCNA_00441 0.33 +0.1
447,938 + CCNA_00441 0.37 +2.6
447,938 + CCNA_00441 0.37 +2.9
447,938 + CCNA_00441 0.37 +3.1
447,983 + CCNA_00441 0.49 +3.0
447,983 + CCNA_00441 0.49 +3.1
447,983 + CCNA_00441 0.49 +3.3
447,983 + CCNA_00441 0.49 +3.6
447,993 + CCNA_00441 0.52 +3.0
448,017 + CCNA_00441 0.59 +3.6
448,037 + CCNA_00441 0.64 +3.5
448,097 + CCNA_00441 0.81 +2.5
448,142 + +3.8
448,162 + +3.1
448,162 + +3.1
448,162 + +3.4
448,181 + +3.0
448,181 + +3.3
448,181 + +2.4
448,181 + +3.1
448,183 + +3.3
448,189 - -1.1
448,189 - +0.2
448,212 - +0.1
448,220 + +3.6
448,228 - +0.2
448,244 + +3.7
448,244 + +3.6
448,253 + +3.4
448,254 + +3.6
448,254 + +3.4
448,260 + +3.4
448,299 + +3.4
448,307 - +0.9
448,312 + +2.8
448,320 - -0.5
448,340 + +2.5
448,362 + +3.9
448,365 - -1.0
448,365 - -2.4
448,370 - +0.3
448,414 - +0.9
448,455 - -0.3
448,457 + +3.9
448,482 - CCNA_00442 0.11 +0.9

Or see this region's nucleotide sequence