Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00429

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00426 and CCNA_00427 are separated by 68 nucleotidesCCNA_00427 and CCNA_00428 overlap by 1 nucleotidesCCNA_00428 and CCNA_00429 are separated by 54 nucleotidesCCNA_00429 and CCNA_00430 are separated by 5 nucleotidesCCNA_00430 and CCNA_00431 are separated by 19 nucleotidesCCNA_00431 and CCNA_00432 are separated by 272 nucleotides CCNA_00426: CCNA_00426 - very-short-patch-repair endonuclease, at 436,545 to 436,889 _00426 CCNA_00427: CCNA_00427 - hypothetical protein, at 436,958 to 437,146 _00427 CCNA_00428: CCNA_00428 - hypothetical protein, at 437,146 to 437,328 _00428 CCNA_00429: CCNA_00429 - hypothetical protein, at 437,383 to 437,550 _00429 CCNA_00430: CCNA_00430 - hypothetical protein, at 437,556 to 437,741 _00430 CCNA_00431: CCNA_00431 - hypothetical protein, at 437,761 to 437,883 _00431 CCNA_00432: CCNA_00432 - AsnC-family transcriptional regulator, at 438,156 to 438,650 _00432 Position (kb) 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 436.401 kb on + strandat 436.423 kb on + strandat 436.464 kb on + strandat 436.465 kb on - strandat 436.466 kb on - strandat 436.472 kb on - strandat 436.472 kb on - strandat 436.549 kb on - strandat 436.564 kb on + strandat 436.572 kb on - strandat 436.586 kb on + strand, within CCNA_00426at 436.589 kb on - strand, within CCNA_00426at 436.596 kb on - strand, within CCNA_00426at 436.616 kb on + strand, within CCNA_00426at 436.624 kb on - strand, within CCNA_00426at 436.638 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.721 kb on + strand, within CCNA_00426at 436.739 kb on - strand, within CCNA_00426at 436.784 kb on - strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.820 kb on + strand, within CCNA_00426at 436.821 kb on + strand, within CCNA_00426at 436.848 kb on - strand, within CCNA_00426at 436.884 kb on + strandat 436.918 kb on + strandat 436.920 kb on + strandat 436.926 kb on - strandat 436.943 kb on + strandat 436.950 kb on - strandat 436.999 kb on + strand, within CCNA_00427at 436.999 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.066 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.082 kb on + strand, within CCNA_00427at 437.121 kb on + strand, within CCNA_00427at 437.128 kb on + strandat 437.129 kb on - strandat 437.129 kb on - strandat 437.136 kb on - strandat 437.184 kb on + strand, within CCNA_00428at 437.189 kb on + strand, within CCNA_00428at 437.197 kb on - strand, within CCNA_00428at 437.205 kb on + strand, within CCNA_00428at 437.205 kb on + strand, within CCNA_00428at 437.215 kb on + strand, within CCNA_00428at 437.232 kb on + strand, within CCNA_00428at 437.240 kb on - strand, within CCNA_00428at 437.242 kb on - strand, within CCNA_00428at 437.242 kb on - strand, within CCNA_00428at 437.246 kb on + strand, within CCNA_00428at 437.247 kb on - strand, within CCNA_00428at 437.256 kb on + strand, within CCNA_00428at 437.256 kb on + strand, within CCNA_00428at 437.264 kb on - strand, within CCNA_00428at 437.271 kb on + strand, within CCNA_00428at 437.271 kb on + strand, within CCNA_00428at 437.278 kb on + strand, within CCNA_00428at 437.279 kb on - strand, within CCNA_00428at 437.279 kb on - strand, within CCNA_00428at 437.298 kb on - strand, within CCNA_00428at 437.303 kb on + strand, within CCNA_00428at 437.303 kb on + strand, within CCNA_00428at 437.311 kb on - strandat 437.311 kb on - strandat 437.377 kb on + strandat 437.415 kb on - strand, within CCNA_00429at 437.457 kb on + strand, within CCNA_00429at 437.458 kb on + strand, within CCNA_00429at 437.491 kb on + strand, within CCNA_00429at 437.499 kb on - strand, within CCNA_00429at 437.582 kb on + strand, within CCNA_00430at 437.582 kb on + strandat 437.606 kb on + strand, within CCNA_00430at 437.606 kb on + strand, within CCNA_00430at 437.614 kb on - strand, within CCNA_00430at 437.614 kb on - strand, within CCNA_00430at 437.685 kb on + strand, within CCNA_00430at 437.700 kb on - strand, within CCNA_00430at 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.728 kb on - strandat 437.765 kb on + strandat 437.777 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.807 kb on + strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strandat 437.860 kb on - strand, within CCNA_00431at 437.865 kb on - strand, within CCNA_00431at 437.903 kb on + strandat 437.903 kb on + strandat 437.931 kb on + strandat 437.939 kb on - strandat 437.939 kb on - strandat 437.969 kb on - strandat 437.986 kb on + strandat 437.986 kb on + strandat 437.994 kb on - strandat 437.994 kb on - strandat 438.030 kb on + strandat 438.084 kb on - strandat 438.113 kb on + strandat 438.189 kb on - strandat 438.195 kb on - strandat 438.195 kb on - strandat 438.218 kb on + strand, within CCNA_00432at 438.241 kb on - strand, within CCNA_00432at 438.243 kb on + strand, within CCNA_00432at 438.246 kb on - strand, within CCNA_00432at 438.251 kb on - strand, within CCNA_00432at 438.264 kb on + strand, within CCNA_00432at 438.272 kb on - strand, within CCNA_00432at 438.272 kb on - strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.292 kb on + strand, within CCNA_00432at 438.293 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.300 kb on - strand, within CCNA_00432at 438.348 kb on - strand, within CCNA_00432at 438.352 kb on + strand, within CCNA_00432at 438.352 kb on + strand, within CCNA_00432at 438.360 kb on - strand, within CCNA_00432at 438.360 kb on - strand, within CCNA_00432at 438.382 kb on - strand, within CCNA_00432at 438.387 kb on - strand, within CCNA_00432at 438.392 kb on - strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.435 kb on + strand, within CCNA_00432at 438.442 kb on - strand, within CCNA_00432at 438.442 kb on - strand, within CCNA_00432at 438.443 kb on - strand, within CCNA_00432at 438.453 kb on + strand, within CCNA_00432at 438.480 kb on - strand, within CCNA_00432at 438.480 kb on - strand, within CCNA_00432at 438.506 kb on + strand, within CCNA_00432at 438.519 kb on + strand, within CCNA_00432at 438.524 kb on + strand, within CCNA_00432at 438.524 kb on + strand, within CCNA_00432at 438.524 kb on + strandat 438.524 kb on + strandat 438.527 kb on - strand, within CCNA_00432at 438.528 kb on - strand, within CCNA_00432at 438.529 kb on + strand, within CCNA_00432at 438.530 kb on + strand, within CCNA_00432at 438.532 kb on - strand, within CCNA_00432at 438.532 kb on - strand, within CCNA_00432

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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436,401 + -1.2
436,423 + -0.6
436,464 + +0.0
436,465 - -0.7
436,466 - -0.7
436,472 - -1.2
436,472 - +0.8
436,549 - +0.9
436,564 + -0.6
436,572 - -1.9
436,586 + CCNA_00426 0.12 -1.0
436,589 - CCNA_00426 0.13 -3.1
436,596 - CCNA_00426 0.15 -1.6
436,616 + CCNA_00426 0.21 -1.2
436,624 - CCNA_00426 0.23 +0.4
436,638 - CCNA_00426 0.27 +0.4
436,647 - CCNA_00426 0.30 -1.2
436,647 - CCNA_00426 0.30 -1.8
436,648 - CCNA_00426 0.30 +0.2
436,648 - CCNA_00426 0.30 +1.7
436,721 + CCNA_00426 0.51 -0.3
436,739 - CCNA_00426 0.56 -2.0
436,784 - CCNA_00426 0.69 -1.6
436,797 + CCNA_00426 0.73 +0.4
436,805 - CCNA_00426 0.75 +1.2
436,805 - CCNA_00426 0.75 +0.8
436,805 - CCNA_00426 0.75 +1.2
436,805 - CCNA_00426 0.75 -1.1
436,820 + CCNA_00426 0.80 -2.7
436,821 + CCNA_00426 0.80 -0.5
436,848 - CCNA_00426 0.88 -0.1
436,884 + -0.1
436,918 + +1.1
436,920 + -1.0
436,926 - +0.2
436,943 + +0.8
436,950 - +1.0
436,999 + CCNA_00427 0.22 +0.2
436,999 + CCNA_00427 0.22 +1.4
437,059 + CCNA_00427 0.53 -0.2
437,059 + CCNA_00427 0.53 +0.6
437,059 + CCNA_00427 0.53 -0.4
437,059 + CCNA_00427 0.53 +1.6
437,059 + CCNA_00427 0.53 -0.7
437,066 - CCNA_00427 0.57 -0.1
437,067 - CCNA_00427 0.58 -1.6
437,067 - CCNA_00427 0.58 +0.7
437,067 - CCNA_00427 0.58 +0.3
437,067 - CCNA_00427 0.58 -0.5
437,082 + CCNA_00427 0.66 +1.8
437,121 + CCNA_00427 0.86 -1.1
437,128 + -0.9
437,129 - +0.4
437,129 - -1.7
437,136 - +0.4
437,184 + CCNA_00428 0.21 -0.6
437,189 + CCNA_00428 0.23 -0.9
437,197 - CCNA_00428 0.28 -1.1
437,205 + CCNA_00428 0.32 +1.1
437,205 + CCNA_00428 0.32 +0.4
437,215 + CCNA_00428 0.38 -1.7
437,232 + CCNA_00428 0.47 -0.7
437,240 - CCNA_00428 0.51 +0.3
437,242 - CCNA_00428 0.52 +0.1
437,242 - CCNA_00428 0.52 +1.4
437,246 + CCNA_00428 0.55 +1.9
437,247 - CCNA_00428 0.55 -0.4
437,256 + CCNA_00428 0.60 +1.6
437,256 + CCNA_00428 0.60 -0.2
437,264 - CCNA_00428 0.64 -0.4
437,271 + CCNA_00428 0.68 +0.2
437,271 + CCNA_00428 0.68 -1.7
437,278 + CCNA_00428 0.72 +2.3
437,279 - CCNA_00428 0.73 +0.9
437,279 - CCNA_00428 0.73 +0.3
437,298 - CCNA_00428 0.83 -1.1
437,303 + CCNA_00428 0.86 +2.9
437,303 + CCNA_00428 0.86 +0.2
437,311 - -0.9
437,311 - -1.6
437,377 + -1.0
437,415 - CCNA_00429 0.19 +0.4
437,457 + CCNA_00429 0.44 +3.4
437,458 + CCNA_00429 0.45 +0.3
437,491 + CCNA_00429 0.64 -0.3
437,499 - CCNA_00429 0.69 +0.4
437,582 + CCNA_00430 0.14 +0.9
437,582 + +2.0
437,606 + CCNA_00430 0.27 +0.8
437,606 + CCNA_00430 0.27 -1.4
437,614 - CCNA_00430 0.31 +2.4
437,614 - CCNA_00430 0.31 -2.1
437,685 + CCNA_00430 0.69 -0.4
437,700 - CCNA_00430 0.77 -0.3
437,723 - +0.3
437,723 - -1.9
437,723 - +0.4
437,723 - +1.0
437,723 - +1.4
437,728 - -0.7
437,765 + +1.2
437,777 + CCNA_00431 0.13 +2.2
437,779 + CCNA_00431 0.15 -1.1
437,779 + CCNA_00431 0.15 -1.4
437,779 + CCNA_00431 0.15 +1.2
437,779 + CCNA_00431 0.15 -2.2
437,779 + CCNA_00431 0.15 -0.8
437,779 + CCNA_00431 0.15 +0.5
437,779 + CCNA_00431 0.15 -1.1
437,779 + CCNA_00431 0.15 -0.5
437,779 + CCNA_00431 0.15 -1.7
437,779 + CCNA_00431 0.15 -1.8
437,779 + CCNA_00431 0.15 -0.0
437,789 + CCNA_00431 0.23 +0.5
437,789 + CCNA_00431 0.23 +0.9
437,789 + CCNA_00431 0.23 -0.7
437,789 + CCNA_00431 0.23 -0.1
437,789 + CCNA_00431 0.23 +1.3
437,789 + CCNA_00431 0.23 -1.5
437,789 + CCNA_00431 0.23 +2.4
437,789 + CCNA_00431 0.23 +1.3
437,807 + CCNA_00431 0.37 +1.0
437,860 - CCNA_00431 0.80 +0.1
437,860 - CCNA_00431 0.80 -0.1
437,860 - +1.0
437,860 - CCNA_00431 0.80 -0.5
437,865 - CCNA_00431 0.85 +0.1
437,903 + +0.3
437,903 + -0.2
437,931 + +0.1
437,939 - -2.8
437,939 - -1.1
437,969 - -0.8
437,986 + -0.3
437,986 + +0.0
437,994 - +0.9
437,994 - -0.2
438,030 + -1.1
438,084 - -1.1
438,113 + +0.1
438,189 - +2.3
438,195 - +0.9
438,195 - +1.9
438,218 + CCNA_00432 0.13 +2.2
438,241 - CCNA_00432 0.17 +1.4
438,243 + CCNA_00432 0.18 -0.5
438,246 - CCNA_00432 0.18 +2.1
438,251 - CCNA_00432 0.19 +1.6
438,264 + CCNA_00432 0.22 -1.0
438,272 - CCNA_00432 0.23 +1.5
438,272 - CCNA_00432 0.23 +0.8
438,292 + CCNA_00432 0.27 +3.3
438,292 + CCNA_00432 0.27 +1.0
438,292 + CCNA_00432 0.27 -0.3
438,293 - CCNA_00432 0.28 +1.9
438,300 - CCNA_00432 0.29 +1.2
438,300 - CCNA_00432 0.29 +1.6
438,300 - CCNA_00432 0.29 +1.6
438,348 - CCNA_00432 0.39 +0.9
438,352 + CCNA_00432 0.40 -0.2
438,352 + CCNA_00432 0.40 -1.9
438,360 - CCNA_00432 0.41 +1.4
438,360 - CCNA_00432 0.41 +1.2
438,382 - CCNA_00432 0.46 +0.0
438,387 - CCNA_00432 0.47 +0.4
438,392 - CCNA_00432 0.48 +1.5
438,435 + CCNA_00432 0.56 -1.5
438,435 + CCNA_00432 0.56 -1.0
438,435 + CCNA_00432 0.56 +0.4
438,442 - CCNA_00432 0.58 -0.6
438,442 - CCNA_00432 0.58 +2.2
438,443 - CCNA_00432 0.58 +0.6
438,453 + CCNA_00432 0.60 +1.2
438,480 - CCNA_00432 0.65 +1.3
438,480 - CCNA_00432 0.65 +0.5
438,506 + CCNA_00432 0.71 +0.6
438,519 + CCNA_00432 0.73 -0.1
438,524 + CCNA_00432 0.74 -1.9
438,524 + CCNA_00432 0.74 +0.0
438,524 + +3.0
438,524 + +2.0
438,527 - CCNA_00432 0.75 +0.2
438,528 - CCNA_00432 0.75 +0.4
438,529 + CCNA_00432 0.75 +0.0
438,530 + CCNA_00432 0.76 +0.6
438,532 - CCNA_00432 0.76 +1.6
438,532 - CCNA_00432 0.76 +0.9

Or see this region's nucleotide sequence