Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00369

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00367 and CCNA_00368 are separated by 5 nucleotidesCCNA_00368 and CCNA_00369 are separated by 149 nucleotidesCCNA_00369 and CCNA_03918 are separated by 294 nucleotidesCCNA_03918 and CCNA_00370 are separated by 16 nucleotidesCCNA_00370 and CCNA_00371 are separated by 10 nucleotides CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825 _00367 CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667 _00368 CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130 _00369 CCNA_03918: CCNA_03918 - hypothetical protein, at 387,425 to 387,559 _03918 CCNA_00370: CCNA_00370 - ATP synthase B chain, at 387,576 to 388,085 _00370 CCNA_00371: CCNA_00371 - ATP synthase B, at 388,096 to 388,629 _00371 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -2 -1 0 1 2 3at 384.851 kb on + strandat 384.889 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.909 kb on + strandat 384.910 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.925 kb on + strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.950 kb on + strand, within CCNA_00368at 384.974 kb on - strand, within CCNA_00368at 385.010 kb on + strand, within CCNA_00368at 385.020 kb on + strand, within CCNA_00368at 385.055 kb on + strand, within CCNA_00368at 385.077 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.182 kb on + strand, within CCNA_00368at 385.216 kb on + strand, within CCNA_00368at 385.224 kb on - strand, within CCNA_00368at 385.229 kb on - strand, within CCNA_00368at 385.254 kb on + strand, within CCNA_00368at 385.277 kb on + strand, within CCNA_00368at 385.279 kb on + strand, within CCNA_00368at 385.313 kb on + strand, within CCNA_00368at 385.334 kb on + strand, within CCNA_00368at 385.415 kb on + strand, within CCNA_00368at 385.419 kb on - strand, within CCNA_00368at 385.423 kb on - strand, within CCNA_00368at 385.424 kb on + strand, within CCNA_00368at 385.449 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.470 kb on + strand, within CCNA_00368at 385.478 kb on - strand, within CCNA_00368at 385.488 kb on + strand, within CCNA_00368at 385.509 kb on + strand, within CCNA_00368at 385.517 kb on - strand, within CCNA_00368at 385.539 kb on + strand, within CCNA_00368at 385.604 kb on - strandat 385.643 kb on + strandat 385.645 kb on - strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.661 kb on + strandat 385.661 kb on + strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.714 kb on + strandat 385.721 kb on - strandat 385.721 kb on - strandat 385.757 kb on + strandat 385.760 kb on + strandat 385.798 kb on + strandat 385.814 kb on + strandat 385.866 kb on - strandat 385.878 kb on + strandat 385.923 kb on + strandat 385.953 kb on + strand, within CCNA_00369at 385.957 kb on + strand, within CCNA_00369at 385.960 kb on - strand, within CCNA_00369at 385.966 kb on - strand, within CCNA_00369at 385.995 kb on - strand, within CCNA_00369at 386.010 kb on + strand, within CCNA_00369at 386.013 kb on - strand, within CCNA_00369at 386.094 kb on + strand, within CCNA_00369at 386.112 kb on + strand, within CCNA_00369at 386.112 kb on - strand, within CCNA_00369at 386.112 kb on - strand, within CCNA_00369at 386.147 kb on + strand, within CCNA_00369at 386.147 kb on + strand, within CCNA_00369at 386.155 kb on - strand, within CCNA_00369at 386.156 kb on - strand, within CCNA_00369at 386.159 kb on + strand, within CCNA_00369at 386.168 kb on + strand, within CCNA_00369at 386.171 kb on - strand, within CCNA_00369at 386.198 kb on + strand, within CCNA_00369at 386.211 kb on - strand, within CCNA_00369at 386.242 kb on - strand, within CCNA_00369at 386.247 kb on - strand, within CCNA_00369at 386.247 kb on - strand, within CCNA_00369at 386.261 kb on + strand, within CCNA_00369at 386.274 kb on + strand, within CCNA_00369at 386.280 kb on - strand, within CCNA_00369at 386.284 kb on + strand, within CCNA_00369at 386.298 kb on - strand, within CCNA_00369at 386.325 kb on + strand, within CCNA_00369at 386.333 kb on - strand, within CCNA_00369at 386.333 kb on - strand, within CCNA_00369at 386.352 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.362 kb on + strand, within CCNA_00369at 386.370 kb on - strand, within CCNA_00369at 386.394 kb on - strand, within CCNA_00369at 386.396 kb on + strand, within CCNA_00369at 386.404 kb on - strand, within CCNA_00369at 386.406 kb on + strand, within CCNA_00369at 386.527 kb on + strand, within CCNA_00369at 386.562 kb on - strand, within CCNA_00369at 386.608 kb on + strand, within CCNA_00369at 386.616 kb on - strand, within CCNA_00369at 386.642 kb on + strand, within CCNA_00369at 386.689 kb on + strand, within CCNA_00369at 386.698 kb on - strand, within CCNA_00369at 386.707 kb on + strand, within CCNA_00369at 386.707 kb on + strand, within CCNA_00369at 386.707 kb on + strand, within CCNA_00369at 386.707 kb on + strand, within CCNA_00369at 386.715 kb on - strand, within CCNA_00369at 386.795 kb on + strand, within CCNA_00369at 386.804 kb on - strand, within CCNA_00369at 386.845 kb on - strand, within CCNA_00369at 386.893 kb on - strand, within CCNA_00369at 386.907 kb on + strand, within CCNA_00369at 386.917 kb on + strand, within CCNA_00369at 386.981 kb on + strand, within CCNA_00369at 387.022 kb on + strandat 387.081 kb on + strandat 387.090 kb on - strandat 387.095 kb on - strandat 387.116 kb on + strandat 387.116 kb on + strandat 387.116 kb on + strandat 387.124 kb on + strandat 387.133 kb on - strandat 387.149 kb on + strandat 387.155 kb on - strandat 387.159 kb on + strandat 387.205 kb on + strandat 387.205 kb on + strandat 387.213 kb on - strandat 387.278 kb on + strandat 387.278 kb on + strandat 387.294 kb on + strandat 387.302 kb on - strandat 387.307 kb on - strandat 387.310 kb on + strandat 387.318 kb on - strandat 387.326 kb on - strandat 387.417 kb on - strandat 387.417 kb on - strandat 387.417 kb on - strandat 387.437 kb on - strandat 387.490 kb on + strand, within CCNA_03918at 387.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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384,851 + +2.4
384,889 + +1.9
384,894 + +2.0
384,894 + +1.7
384,894 + +3.1
384,894 + +1.5
384,902 - -0.7
384,902 - +1.2
384,902 - +2.3
384,902 - -0.0
384,902 - +0.0
384,909 + +0.8
384,910 + +1.3
384,914 + +2.2
384,914 + +2.4
384,925 + CCNA_00368 0.11 +2.0
384,933 - CCNA_00368 0.12 -0.3
384,933 - CCNA_00368 0.12 -0.3
384,950 + CCNA_00368 0.14 +2.4
384,974 - CCNA_00368 0.17 +1.3
385,010 + CCNA_00368 0.21 +1.7
385,020 + CCNA_00368 0.23 +2.7
385,055 + CCNA_00368 0.27 +1.9
385,077 - CCNA_00368 0.29 +1.0
385,141 - CCNA_00368 0.37 +1.2
385,141 - CCNA_00368 0.37 -1.2
385,182 + CCNA_00368 0.42 +2.6
385,216 + CCNA_00368 0.46 +2.4
385,224 - CCNA_00368 0.47 +1.2
385,229 - CCNA_00368 0.48 +0.7
385,254 + CCNA_00368 0.51 +2.4
385,277 + CCNA_00368 0.53 +2.0
385,279 + CCNA_00368 0.54 +2.4
385,313 + CCNA_00368 0.58 +2.3
385,334 + CCNA_00368 0.60 +1.9
385,415 + CCNA_00368 0.70 +2.4
385,419 - CCNA_00368 0.70 +0.7
385,423 - CCNA_00368 0.71 -0.2
385,424 + CCNA_00368 0.71 +1.7
385,449 + CCNA_00368 0.74 +1.8
385,465 + CCNA_00368 0.76 +2.6
385,465 + CCNA_00368 0.76 +2.9
385,465 + CCNA_00368 0.76 +2.9
385,465 + CCNA_00368 0.76 +1.6
385,470 + CCNA_00368 0.76 +0.7
385,478 - CCNA_00368 0.77 -0.2
385,488 + CCNA_00368 0.78 +1.7
385,509 + CCNA_00368 0.81 +2.6
385,517 - CCNA_00368 0.82 +0.8
385,539 + CCNA_00368 0.85 +1.9
385,604 - +0.4
385,643 + +3.2
385,645 - +2.1
385,656 + +2.9
385,656 + +3.0
385,656 + +3.6
385,656 + +3.0
385,661 + +3.2
385,661 + +3.6
385,664 - +0.6
385,664 - -1.1
385,664 - -2.1
385,666 + +3.2
385,666 + +3.3
385,666 + +2.5
385,666 + +3.0
385,666 + +3.2
385,666 + +3.4
385,714 + +1.4
385,721 - -2.7
385,721 - -1.9
385,757 + +0.2
385,760 + +0.5
385,798 + +1.0
385,814 + +0.5
385,866 - +0.3
385,878 + +1.5
385,923 + +0.9
385,953 + CCNA_00369 0.10 +0.3
385,957 + CCNA_00369 0.11 +0.8
385,960 - CCNA_00369 0.11 +1.5
385,966 - CCNA_00369 0.11 +0.1
385,995 - CCNA_00369 0.14 +1.8
386,010 + CCNA_00369 0.15 +1.1
386,013 - CCNA_00369 0.15 +1.3
386,094 + CCNA_00369 0.21 +0.7
386,112 + CCNA_00369 0.22 +0.2
386,112 - CCNA_00369 0.22 -0.1
386,112 - CCNA_00369 0.22 +1.2
386,147 + CCNA_00369 0.25 +1.7
386,147 + CCNA_00369 0.25 +1.1
386,155 - CCNA_00369 0.26 +0.0
386,156 - CCNA_00369 0.26 +1.2
386,159 + CCNA_00369 0.26 +1.4
386,168 + CCNA_00369 0.27 -0.3
386,171 - CCNA_00369 0.27 -0.1
386,198 + CCNA_00369 0.29 +0.2
386,211 - CCNA_00369 0.30 -2.0
386,242 - CCNA_00369 0.32 -0.9
386,247 - CCNA_00369 0.33 +0.6
386,247 - CCNA_00369 0.33 -0.8
386,261 + CCNA_00369 0.34 +1.9
386,274 + CCNA_00369 0.35 +0.5
386,280 - CCNA_00369 0.35 -1.6
386,284 + CCNA_00369 0.36 +0.8
386,298 - CCNA_00369 0.37 +1.2
386,325 + CCNA_00369 0.39 +0.7
386,333 - CCNA_00369 0.39 +1.4
386,333 - CCNA_00369 0.39 +2.4
386,352 + CCNA_00369 0.41 +1.2
386,362 + CCNA_00369 0.41 +1.9
386,362 + CCNA_00369 0.41 +1.7
386,362 + CCNA_00369 0.41 +0.7
386,370 - CCNA_00369 0.42 +1.8
386,394 - CCNA_00369 0.44 +1.3
386,396 + CCNA_00369 0.44 +1.6
386,404 - CCNA_00369 0.45 +0.4
386,406 + CCNA_00369 0.45 +1.5
386,527 + CCNA_00369 0.54 +0.7
386,562 - CCNA_00369 0.57 +0.6
386,608 + CCNA_00369 0.60 +1.3
386,616 - CCNA_00369 0.61 +0.1
386,642 + CCNA_00369 0.63 +0.2
386,689 + CCNA_00369 0.66 +1.2
386,698 - CCNA_00369 0.67 +2.5
386,707 + CCNA_00369 0.68 +1.1
386,707 + CCNA_00369 0.68 +2.9
386,707 + CCNA_00369 0.68 +2.2
386,707 + CCNA_00369 0.68 +3.5
386,715 - CCNA_00369 0.68 +1.2
386,795 + CCNA_00369 0.74 +2.0
386,804 - CCNA_00369 0.75 +1.3
386,845 - CCNA_00369 0.78 +1.8
386,893 - CCNA_00369 0.82 +0.6
386,907 + CCNA_00369 0.83 +2.3
386,917 + CCNA_00369 0.84 +2.0
386,981 + CCNA_00369 0.89 +3.6
387,022 + +1.9
387,081 + +3.3
387,090 - +1.6
387,095 - +2.2
387,116 + +2.2
387,116 + +1.7
387,116 + +1.7
387,124 + +1.6
387,133 - +1.6
387,149 + +1.1
387,155 - +1.0
387,159 + +2.4
387,205 + +0.5
387,205 + +1.6
387,213 - +1.6
387,278 + +1.6
387,278 + -1.0
387,294 + +1.0
387,302 - +1.1
387,307 - +1.9
387,310 + +0.6
387,318 - +1.9
387,326 - +3.3
387,417 - +1.1
387,417 - +1.2
387,417 - +2.0
387,437 - +2.4
387,490 + CCNA_03918 0.48 +1.1
387,620 + -0.9

Or see this region's nucleotide sequence