Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00357 and CCNA_00358 are separated by 37 nucleotides CCNA_00358 and CCNA_00359 are separated by 82 nucleotides CCNA_00359 and CCNA_00360 are separated by 199 nucleotides
CCNA_00357: CCNA_00357 - secretory tripeptidyl aminopeptidase, at 373,511 to 374,938
_00357
CCNA_00358: CCNA_00358 - delta 3,5-delta2,4-dienoyl-CoA isomerase precursor, at 374,976 to 375,836
_00358
CCNA_00359: CCNA_00359 - SH3 domain-containing cell surface protein, at 375,919 to 376,716
_00359
CCNA_00360: CCNA_00360 - alpha/beta hydrolase superfamily protein, at 376,916 to 377,806
_00360
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 374.942 kb on + strand at 374.969 kb on - strand at 374.971 kb on - strand at 375.002 kb on + strand at 375.002 kb on + strand at 375.007 kb on + strand at 375.007 kb on + strand at 375.010 kb on - strand at 375.010 kb on - strand at 375.032 kb on - strand at 375.032 kb on - strand at 375.055 kb on - strand at 375.059 kb on - strand at 375.069 kb on + strand, within CCNA_00358 at 375.091 kb on + strand, within CCNA_00358 at 375.094 kb on + strand, within CCNA_00358 at 375.210 kb on + strand, within CCNA_00358 at 375.239 kb on - strand, within CCNA_00358 at 375.249 kb on - strand, within CCNA_00358 at 375.280 kb on - strand, within CCNA_00358 at 375.281 kb on - strand, within CCNA_00358 at 375.287 kb on + strand, within CCNA_00358 at 375.292 kb on + strand, within CCNA_00358 at 375.300 kb on - strand, within CCNA_00358 at 375.300 kb on - strand, within CCNA_00358 at 375.305 kb on - strand, within CCNA_00358 at 375.338 kb on + strand, within CCNA_00358 at 375.373 kb on + strand, within CCNA_00358 at 375.381 kb on - strand, within CCNA_00358 at 375.508 kb on + strand, within CCNA_00358 at 375.517 kb on - strand, within CCNA_00358 at 375.518 kb on - strand, within CCNA_00358 at 375.518 kb on - strand, within CCNA_00358 at 375.597 kb on - strand, within CCNA_00358 at 375.614 kb on - strand, within CCNA_00358 at 375.628 kb on - strand, within CCNA_00358 at 375.731 kb on + strand, within CCNA_00358 at 375.739 kb on - strand, within CCNA_00358 at 375.739 kb on - strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.741 kb on + strand, within CCNA_00358 at 375.771 kb on - strand at 375.792 kb on - strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.807 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.845 kb on + strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.853 kb on - strand at 375.855 kb on - strand at 375.885 kb on + strand at 375.890 kb on + strand at 375.899 kb on - strand at 375.946 kb on + strand at 375.954 kb on - strand at 375.977 kb on + strand at 376.003 kb on - strand, within CCNA_00359 at 376.005 kb on + strand, within CCNA_00359 at 376.008 kb on - strand, within CCNA_00359 at 376.083 kb on - strand, within CCNA_00359 at 376.104 kb on + strand, within CCNA_00359 at 376.110 kb on - strand, within CCNA_00359 at 376.112 kb on - strand, within CCNA_00359 at 376.124 kb on + strand, within CCNA_00359 at 376.127 kb on - strand, within CCNA_00359 at 376.134 kb on + strand, within CCNA_00359 at 376.149 kb on + strand, within CCNA_00359 at 376.209 kb on - strand, within CCNA_00359 at 376.224 kb on - strand, within CCNA_00359 at 376.228 kb on - strand, within CCNA_00359 at 376.266 kb on + strand, within CCNA_00359 at 376.267 kb on + strand, within CCNA_00359 at 376.269 kb on - strand, within CCNA_00359 at 376.274 kb on - strand, within CCNA_00359 at 376.307 kb on + strand, within CCNA_00359 at 376.312 kb on + strand, within CCNA_00359 at 376.330 kb on - strand, within CCNA_00359 at 376.360 kb on + strand, within CCNA_00359 at 376.361 kb on + strand, within CCNA_00359 at 376.385 kb on + strand, within CCNA_00359 at 376.397 kb on + strand, within CCNA_00359 at 376.412 kb on - strand, within CCNA_00359 at 376.499 kb on + strand, within CCNA_00359 at 376.547 kb on + strand, within CCNA_00359 at 376.608 kb on + strand, within CCNA_00359 at 376.630 kb on + strand, within CCNA_00359 at 376.670 kb on - strand at 376.705 kb on + strand at 376.718 kb on - strand at 376.719 kb on - strand at 376.744 kb on + strand at 376.757 kb on - strand at 376.760 kb on - strand at 376.762 kb on - strand at 376.810 kb on + strand at 376.811 kb on + strand at 376.853 kb on - strand at 376.878 kb on + strand at 376.891 kb on - strand at 376.906 kb on - strand at 376.906 kb on - strand at 376.923 kb on + strand at 376.940 kb on + strand at 376.982 kb on + strand at 376.982 kb on + strand at 376.982 kb on + strand at 376.990 kb on - strand at 377.040 kb on - strand, within CCNA_00360 at 377.048 kb on + strand, within CCNA_00360 at 377.068 kb on + strand, within CCNA_00360 at 377.076 kb on - strand, within CCNA_00360 at 377.103 kb on + strand, within CCNA_00360 at 377.227 kb on + strand, within CCNA_00360 at 377.290 kb on + strand, within CCNA_00360 at 377.290 kb on + strand, within CCNA_00360 at 377.290 kb on + strand, within CCNA_00360 at 377.290 kb on + strand, within CCNA_00360 at 377.298 kb on - strand, within CCNA_00360 at 377.298 kb on - strand, within CCNA_00360 at 377.349 kb on - strand, within CCNA_00360 at 377.444 kb on + strand, within CCNA_00360 at 377.490 kb on + strand, within CCNA_00360 at 377.530 kb on - strand, within CCNA_00360 at 377.557 kb on - strand, within CCNA_00360 at 377.584 kb on - strand, within CCNA_00360 at 377.689 kb on - strand, within CCNA_00360 at 377.711 kb on + strand, within CCNA_00360 at 377.711 kb on - strand, within CCNA_00360
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 374,942 + +2.4 374,969 - +0.2 374,971 - +1.5 375,002 + +0.0 375,002 + +2.0 375,007 + -1.2 375,007 + +0.9 375,010 - +0.5 375,010 - +1.0 375,032 - +1.9 375,032 - -0.5 375,055 - -0.9 375,059 - +0.4 375,069 + CCNA_00358 0.11 +0.8 375,091 + CCNA_00358 0.13 +0.4 375,094 + CCNA_00358 0.14 -1.1 375,210 + CCNA_00358 0.27 -0.4 375,239 - CCNA_00358 0.31 -0.6 375,249 - CCNA_00358 0.32 +2.6 375,280 - CCNA_00358 0.35 -0.8 375,281 - CCNA_00358 0.35 +0.5 375,287 + CCNA_00358 0.36 -0.6 375,292 + CCNA_00358 0.37 -0.4 375,300 - CCNA_00358 0.38 -2.0 375,300 - CCNA_00358 0.38 -1.1 375,305 - CCNA_00358 0.38 -0.6 375,338 + CCNA_00358 0.42 +1.0 375,373 + CCNA_00358 0.46 -0.3 375,381 - CCNA_00358 0.47 +1.0 375,508 + CCNA_00358 0.62 -0.4 375,517 - CCNA_00358 0.63 -0.9 375,518 - CCNA_00358 0.63 -0.1 375,518 - CCNA_00358 0.63 +0.1 375,597 - CCNA_00358 0.72 -1.4 375,614 - CCNA_00358 0.74 +1.6 375,628 - CCNA_00358 0.76 -0.3 375,731 + CCNA_00358 0.88 +0.8 375,739 - CCNA_00358 0.89 -1.2 375,739 - CCNA_00358 0.89 +0.2 375,741 + CCNA_00358 0.89 -1.0 375,741 + CCNA_00358 0.89 +0.2 375,741 + CCNA_00358 0.89 +0.1 375,741 + CCNA_00358 0.89 +0.1 375,771 - +1.4 375,792 - -1.5 375,807 + -0.0 375,807 + +1.0 375,807 + +0.9 375,807 + +0.2 375,845 + -0.8 375,845 + +0.4 375,845 + +0.6 375,845 + +1.3 375,845 + +0.0 375,845 + -0.3 375,845 + +0.9 375,845 + +0.7 375,845 + +0.7 375,845 + +0.1 375,845 + -1.1 375,845 + +2.6 375,845 + +0.9 375,845 + -1.3 375,845 + -1.1 375,853 - +0.2 375,853 - -1.2 375,853 - +0.8 375,853 - +0.6 375,853 - -0.1 375,853 - +0.1 375,853 - +1.1 375,853 - +0.2 375,853 - +0.2 375,853 - -0.3 375,853 - +1.8 375,853 - -1.6 375,853 - -0.9 375,853 - -0.0 375,853 - +0.6 375,855 - -0.3 375,885 + +0.9 375,890 + +1.6 375,899 - -1.3 375,946 + -0.8 375,954 - -0.6 375,977 + +1.2 376,003 - CCNA_00359 0.11 +0.5 376,005 + CCNA_00359 0.11 +0.5 376,008 - CCNA_00359 0.11 -0.8 376,083 - CCNA_00359 0.21 +1.6 376,104 + CCNA_00359 0.23 +0.3 376,110 - CCNA_00359 0.24 -0.4 376,112 - CCNA_00359 0.24 -0.1 376,124 + CCNA_00359 0.26 +1.9 376,127 - CCNA_00359 0.26 -0.2 376,134 + CCNA_00359 0.27 +1.4 376,149 + CCNA_00359 0.29 +1.7 376,209 - CCNA_00359 0.36 -1.5 376,224 - CCNA_00359 0.38 +1.5 376,228 - CCNA_00359 0.39 +0.8 376,266 + CCNA_00359 0.43 +2.5 376,267 + CCNA_00359 0.44 +0.4 376,269 - CCNA_00359 0.44 +0.4 376,274 - CCNA_00359 0.44 -0.7 376,307 + CCNA_00359 0.49 +0.5 376,312 + CCNA_00359 0.49 +3.6 376,330 - CCNA_00359 0.52 +0.7 376,360 + CCNA_00359 0.55 +1.9 376,361 + CCNA_00359 0.55 +0.6 376,385 + CCNA_00359 0.58 +1.8 376,397 + CCNA_00359 0.60 +0.9 376,412 - CCNA_00359 0.62 +0.3 376,499 + CCNA_00359 0.73 +0.8 376,547 + CCNA_00359 0.79 +1.8 376,608 + CCNA_00359 0.86 +0.6 376,630 + CCNA_00359 0.89 +1.7 376,670 - +0.6 376,705 + +2.4 376,718 - -0.4 376,719 - +0.4 376,744 + +1.5 376,757 - +2.4 376,760 - +0.4 376,762 - -0.3 376,810 + -0.9 376,811 + +0.6 376,853 - -2.0 376,878 + +1.7 376,891 - +0.7 376,906 - -0.6 376,906 - -1.2 376,923 + +0.9 376,940 + +0.5 376,982 + -0.2 376,982 + -0.7 376,982 + -0.8 376,990 - +1.1 377,040 - CCNA_00360 0.14 +1.9 377,048 + CCNA_00360 0.15 +1.3 377,068 + CCNA_00360 0.17 +0.7 377,076 - CCNA_00360 0.18 +1.2 377,103 + CCNA_00360 0.21 +0.6 377,227 + CCNA_00360 0.35 +0.0 377,290 + CCNA_00360 0.42 +0.0 377,290 + CCNA_00360 0.42 +1.1 377,290 + CCNA_00360 0.42 +0.5 377,290 + CCNA_00360 0.42 -0.4 377,298 - CCNA_00360 0.43 -2.8 377,298 - CCNA_00360 0.43 -1.6 377,349 - CCNA_00360 0.49 +1.2 377,444 + CCNA_00360 0.59 +1.4 377,490 + CCNA_00360 0.64 -0.1 377,530 - CCNA_00360 0.69 +0.3 377,557 - CCNA_00360 0.72 -0.7 377,584 - CCNA_00360 0.75 -0.2 377,689 - CCNA_00360 0.87 -1.0 377,711 + CCNA_00360 0.89 +0.5 377,711 - CCNA_00360 0.89 +0.3
Or see this region's nucleotide sequence