Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00355

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00353 and CCNA_00354 are separated by 70 nucleotidesCCNA_00354 and CCNA_00355 are separated by 170 nucleotidesCCNA_00355 and CCNA_00356 are separated by 70 nucleotidesCCNA_00356 and CCNA_00357 are separated by 108 nucleotides CCNA_00353: CCNA_00353 - O-antigen acetylase, at 369,280 to 370,374 _00353 CCNA_00354: CCNA_00354 - NlpC/P60 CHAP domain amidase protein, at 370,445 to 371,152 _00354 CCNA_00355: CCNA_00355 - hypothetical protein with pentapeptide repeats, at 371,323 to 372,567 _00355 CCNA_00356: CCNA_00356 - outer membrane protein, at 372,638 to 373,402 _00356 CCNA_00357: CCNA_00357 - secretory tripeptidyl aminopeptidase, at 373,511 to 374,938 _00357 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 370.404 kb on + strandat 370.411 kb on + strandat 370.412 kb on - strandat 370.419 kb on - strandat 370.431 kb on + strandat 370.437 kb on - strandat 370.444 kb on - strandat 370.466 kb on + strandat 370.495 kb on + strandat 370.505 kb on + strandat 370.600 kb on - strand, within CCNA_00354at 370.610 kb on - strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.665 kb on + strand, within CCNA_00354at 370.666 kb on - strand, within CCNA_00354at 370.674 kb on - strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.725 kb on - strand, within CCNA_00354at 370.739 kb on - strand, within CCNA_00354at 370.805 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.846 kb on + strand, within CCNA_00354at 370.859 kb on - strand, within CCNA_00354at 370.881 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.971 kb on + strand, within CCNA_00354at 370.983 kb on - strand, within CCNA_00354at 371.012 kb on + strand, within CCNA_00354at 371.030 kb on + strand, within CCNA_00354at 371.098 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.154 kb on - strandat 371.159 kb on - strandat 371.167 kb on + strandat 371.234 kb on + strandat 371.277 kb on + strandat 371.292 kb on - strandat 371.338 kb on - strandat 371.363 kb on - strandat 371.370 kb on + strandat 371.372 kb on - strandat 371.382 kb on - strandat 371.418 kb on + strandat 371.418 kb on + strandat 371.424 kb on + strandat 371.424 kb on + strandat 371.432 kb on - strandat 371.443 kb on + strandat 371.451 kb on - strand, within CCNA_00355at 371.478 kb on + strand, within CCNA_00355at 371.478 kb on + strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.511 kb on - strand, within CCNA_00355at 371.528 kb on + strand, within CCNA_00355at 371.528 kb on - strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.533 kb on + strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.541 kb on - strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.543 kb on + strand, within CCNA_00355at 371.546 kb on - strand, within CCNA_00355at 371.551 kb on - strand, within CCNA_00355at 371.556 kb on - strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.588 kb on + strand, within CCNA_00355at 371.596 kb on - strand, within CCNA_00355at 371.596 kb on - strand, within CCNA_00355at 371.603 kb on + strand, within CCNA_00355at 371.603 kb on + strand, within CCNA_00355at 371.611 kb on - strand, within CCNA_00355at 371.621 kb on - strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.633 kb on + strand, within CCNA_00355at 371.641 kb on - strand, within CCNA_00355at 371.678 kb on + strand, within CCNA_00355at 371.712 kb on + strand, within CCNA_00355at 371.743 kb on - strand, within CCNA_00355at 371.768 kb on + strand, within CCNA_00355at 371.778 kb on + strand, within CCNA_00355at 371.786 kb on + strand, within CCNA_00355at 371.844 kb on - strand, within CCNA_00355at 371.854 kb on - strand, within CCNA_00355at 371.896 kb on + strand, within CCNA_00355at 371.898 kb on + strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.906 kb on - strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.931 kb on + strand, within CCNA_00355at 371.936 kb on + strand, within CCNA_00355at 371.939 kb on - strand, within CCNA_00355at 371.944 kb on - strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.946 kb on + strand, within CCNA_00355at 371.954 kb on - strandat 371.954 kb on - strand, within CCNA_00355at 371.954 kb on - strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.971 kb on + strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.979 kb on - strand, within CCNA_00355at 371.989 kb on - strand, within CCNA_00355at 372.001 kb on + strand, within CCNA_00355at 372.004 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.009 kb on - strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.011 kb on + strand, within CCNA_00355at 372.023 kb on + strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.024 kb on - strand, within CCNA_00355at 372.031 kb on - strand, within CCNA_00355at 372.046 kb on - strand, within CCNA_00355at 372.234 kb on + strand, within CCNA_00355at 372.240 kb on - strand, within CCNA_00355at 372.247 kb on + strand, within CCNA_00355at 372.257 kb on + strand, within CCNA_00355at 372.265 kb on - strand, within CCNA_00355at 372.270 kb on - strand, within CCNA_00355at 372.287 kb on + strand, within CCNA_00355at 372.295 kb on - strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.302 kb on + strand, within CCNA_00355at 372.310 kb on - strand, within CCNA_00355at 372.310 kb on - strand, within CCNA_00355at 372.315 kb on - strand, within CCNA_00355at 372.322 kb on + strand, within CCNA_00355at 372.332 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.342 kb on + strand, within CCNA_00355at 372.347 kb on + strand, within CCNA_00355at 372.360 kb on - strand, within CCNA_00355at 372.362 kb on + strand, within CCNA_00355at 372.365 kb on - strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.412 kb on + strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.420 kb on - strand, within CCNA_00355at 372.435 kb on - strand, within CCNA_00355at 372.437 kb on + strand, within CCNA_00355at 372.437 kb on + strand, within CCNA_00355at 372.440 kb on - strand, within CCNA_00355at 372.482 kb on + strandat 372.502 kb on + strandat 372.525 kb on - strandat 372.618 kb on + strandat 372.718 kb on + strand, within CCNA_00356at 372.778 kb on + strand, within CCNA_00356at 372.864 kb on + strand, within CCNA_00356at 372.872 kb on + strand, within CCNA_00356at 372.880 kb on - strand, within CCNA_00356at 372.895 kb on + strand, within CCNA_00356at 372.972 kb on + strand, within CCNA_00356at 372.977 kb on + strand, within CCNA_00356at 372.990 kb on - strand, within CCNA_00356at 372.996 kb on + strand, within CCNA_00356at 373.004 kb on - strand, within CCNA_00356at 373.027 kb on - strand, within CCNA_00356at 373.032 kb on + strand, within CCNA_00356at 373.040 kb on + strand, within CCNA_00356at 373.043 kb on - strand, within CCNA_00356at 373.079 kb on + strand, within CCNA_00356at 373.087 kb on - strand, within CCNA_00356at 373.118 kb on - strand, within CCNA_00356at 373.156 kb on + strand, within CCNA_00356at 373.160 kb on - strand, within CCNA_00356at 373.162 kb on - strand, within CCNA_00356at 373.172 kb on + strand, within CCNA_00356at 373.187 kb on + strand, within CCNA_00356at 373.190 kb on - strand, within CCNA_00356at 373.192 kb on + strand, within CCNA_00356at 373.200 kb on - strand, within CCNA_00356at 373.290 kb on + strand, within CCNA_00356at 373.321 kb on + strand, within CCNA_00356at 373.331 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.418 kb on + strandat 373.426 kb on - strandat 373.426 kb on - strandat 373.426 kb on - strandat 373.449 kb on - strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.458 kb on + strandat 373.466 kb on - strandat 373.466 kb on - strandat 373.478 kb on - strandat 373.478 kb on - strandat 373.497 kb on + strandat 373.499 kb on + strandat 373.499 kb on + strandat 373.515 kb on - strandat 373.525 kb on + strandat 373.525 kb on + strandat 373.525 kb on + strandat 373.533 kb on - strandat 373.533 kb on - strandat 373.552 kb on + strandat 373.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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370,404 + +4.2
370,411 + +4.0
370,412 - +1.1
370,419 - -0.3
370,431 + +2.4
370,437 - +0.5
370,444 - -1.3
370,466 + +4.8
370,495 + +4.1
370,505 + +5.0
370,600 - CCNA_00354 0.22 -0.6
370,610 - CCNA_00354 0.23 +0.1
370,640 + CCNA_00354 0.28 +4.4
370,640 + CCNA_00354 0.28 +4.3
370,665 + CCNA_00354 0.31 +4.2
370,666 - CCNA_00354 0.31 +1.1
370,674 - CCNA_00354 0.32 +0.7
370,684 + CCNA_00354 0.34 +4.6
370,684 + CCNA_00354 0.34 +4.8
370,725 - CCNA_00354 0.40 +2.0
370,739 - CCNA_00354 0.42 +1.1
370,805 + CCNA_00354 0.51 +4.5
370,840 + CCNA_00354 0.56 +4.2
370,840 + CCNA_00354 0.56 +4.0
370,840 + CCNA_00354 0.56 +4.3
370,840 + CCNA_00354 0.56 +4.1
370,840 + CCNA_00354 0.56 +4.7
370,846 + CCNA_00354 0.57 +4.1
370,859 - CCNA_00354 0.58 +1.2
370,881 + CCNA_00354 0.62 +4.6
370,961 + CCNA_00354 0.73 +3.6
370,961 + CCNA_00354 0.73 +3.1
370,971 + CCNA_00354 0.74 -0.8
370,983 - CCNA_00354 0.76 -0.8
371,012 + CCNA_00354 0.80 +3.5
371,030 + CCNA_00354 0.83 +3.2
371,098 + +3.9
371,146 + +4.2
371,146 + +3.4
371,146 + +2.7
371,146 + +3.3
371,154 - -0.3
371,159 - -1.1
371,167 + +2.1
371,234 + +1.5
371,277 + +0.8
371,292 - -0.0
371,338 - +0.1
371,363 - +4.3
371,370 + +0.1
371,372 - -0.2
371,382 - -1.2
371,418 + +0.8
371,418 + +0.1
371,424 + +0.7
371,424 + +1.2
371,432 - +2.0
371,443 + +0.1
371,451 - CCNA_00355 0.10 +0.7
371,478 + CCNA_00355 0.12 +0.7
371,478 + CCNA_00355 0.12 +0.9
371,511 - CCNA_00355 0.15 -1.2
371,511 - CCNA_00355 0.15 -1.0
371,511 - CCNA_00355 0.15 +0.5
371,511 - CCNA_00355 0.15 +0.3
371,528 + CCNA_00355 0.16 +1.4
371,528 - CCNA_00355 0.16 -1.1
371,533 + CCNA_00355 0.17 +0.7
371,533 + CCNA_00355 0.17 +1.2
371,533 + CCNA_00355 0.17 +0.3
371,541 - CCNA_00355 0.18 -1.5
371,541 - CCNA_00355 0.18 +0.5
371,541 - CCNA_00355 0.18 +1.2
371,543 + CCNA_00355 0.18 +0.7
371,543 + CCNA_00355 0.18 -1.0
371,543 + CCNA_00355 0.18 +1.5
371,546 - CCNA_00355 0.18 +1.0
371,551 - CCNA_00355 0.18 -1.2
371,556 - CCNA_00355 0.19 +0.2
371,588 + CCNA_00355 0.21 +1.0
371,588 + CCNA_00355 0.21 -0.3
371,588 + CCNA_00355 0.21 -1.1
371,596 - CCNA_00355 0.22 +0.8
371,596 - CCNA_00355 0.22 -0.5
371,603 + CCNA_00355 0.22 +0.4
371,603 + CCNA_00355 0.22 +0.0
371,611 - CCNA_00355 0.23 -0.4
371,621 - CCNA_00355 0.24 +0.1
371,633 + CCNA_00355 0.25 +1.2
371,633 + CCNA_00355 0.25 +1.8
371,633 + CCNA_00355 0.25 +1.3
371,641 - CCNA_00355 0.26 -0.9
371,678 + CCNA_00355 0.29 +0.2
371,712 + CCNA_00355 0.31 +1.4
371,743 - CCNA_00355 0.34 +0.3
371,768 + CCNA_00355 0.36 +0.1
371,778 + CCNA_00355 0.37 +1.3
371,786 + CCNA_00355 0.37 +0.6
371,844 - CCNA_00355 0.42 -1.2
371,854 - CCNA_00355 0.43 +0.7
371,896 + CCNA_00355 0.46 -0.0
371,898 + CCNA_00355 0.46 +1.9
371,906 - CCNA_00355 0.47 -0.8
371,906 - CCNA_00355 0.47 -1.2
371,931 + CCNA_00355 0.49 -0.1
371,931 + CCNA_00355 0.49 +2.3
371,931 + CCNA_00355 0.49 +0.7
371,931 + CCNA_00355 0.49 +0.3
371,936 + CCNA_00355 0.49 +3.0
371,939 - CCNA_00355 0.49 -1.6
371,944 - CCNA_00355 0.50 -0.9
371,946 + CCNA_00355 0.50 +0.6
371,946 + CCNA_00355 0.50 -0.0
371,954 - +4.0
371,954 - CCNA_00355 0.51 -1.3
371,954 - CCNA_00355 0.51 -1.2
371,971 + CCNA_00355 0.52 +1.3
371,971 + CCNA_00355 0.52 +1.7
371,971 + CCNA_00355 0.52 +1.5
371,971 + CCNA_00355 0.52 +1.0
371,971 + CCNA_00355 0.52 +0.2
371,971 + CCNA_00355 0.52 +2.9
371,971 + CCNA_00355 0.52 +1.1
371,979 - CCNA_00355 0.53 -2.0
371,979 - CCNA_00355 0.53 -1.6
371,979 - CCNA_00355 0.53 +0.2
371,989 - CCNA_00355 0.53 +0.5
372,001 + CCNA_00355 0.54 +0.4
372,004 - CCNA_00355 0.55 -1.7
372,009 - CCNA_00355 0.55 -0.6
372,009 - CCNA_00355 0.55 -0.8
372,009 - CCNA_00355 0.55 -0.5
372,011 + CCNA_00355 0.55 +0.6
372,011 + CCNA_00355 0.55 +0.9
372,023 + CCNA_00355 0.56 +1.9
372,024 - CCNA_00355 0.56 +2.4
372,024 - CCNA_00355 0.56 -0.3
372,024 - CCNA_00355 0.56 -1.5
372,031 - CCNA_00355 0.57 -1.4
372,046 - CCNA_00355 0.58 -0.4
372,234 + CCNA_00355 0.73 +3.0
372,240 - CCNA_00355 0.74 +1.7
372,247 + CCNA_00355 0.74 +1.2
372,257 + CCNA_00355 0.75 +1.1
372,265 - CCNA_00355 0.76 +0.0
372,270 - CCNA_00355 0.76 -0.1
372,287 + CCNA_00355 0.77 +1.0
372,295 - CCNA_00355 0.78 -0.3
372,302 + CCNA_00355 0.79 +1.8
372,302 + CCNA_00355 0.79 +0.5
372,302 + CCNA_00355 0.79 +0.1
372,302 + CCNA_00355 0.79 +0.5
372,310 - CCNA_00355 0.79 -0.5
372,310 - CCNA_00355 0.79 +0.2
372,315 - CCNA_00355 0.80 -0.5
372,322 + CCNA_00355 0.80 +0.5
372,332 + CCNA_00355 0.81 +2.3
372,342 + CCNA_00355 0.82 -1.6
372,342 + CCNA_00355 0.82 +1.1
372,342 + CCNA_00355 0.82 +0.1
372,347 + CCNA_00355 0.82 +1.1
372,360 - CCNA_00355 0.83 -0.7
372,362 + CCNA_00355 0.83 +0.5
372,365 - CCNA_00355 0.84 -2.0
372,412 + CCNA_00355 0.87 -1.2
372,412 + CCNA_00355 0.87 +0.9
372,412 + CCNA_00355 0.87 -0.4
372,412 + CCNA_00355 0.87 +0.1
372,412 + CCNA_00355 0.87 +0.8
372,412 + CCNA_00355 0.87 +1.0
372,412 + CCNA_00355 0.87 +0.8
372,420 - CCNA_00355 0.88 -1.1
372,420 - CCNA_00355 0.88 -1.4
372,420 - CCNA_00355 0.88 +1.4
372,435 - CCNA_00355 0.89 +0.1
372,437 + CCNA_00355 0.89 -1.6
372,437 + CCNA_00355 0.89 -0.4
372,440 - CCNA_00355 0.90 +2.9
372,482 + -0.1
372,502 + -0.8
372,525 - -0.6
372,618 + +0.7
372,718 + CCNA_00356 0.10 +0.2
372,778 + CCNA_00356 0.18 +0.2
372,864 + CCNA_00356 0.30 +2.4
372,872 + CCNA_00356 0.31 -0.4
372,880 - CCNA_00356 0.32 +0.1
372,895 + CCNA_00356 0.34 +1.0
372,972 + CCNA_00356 0.44 +0.4
372,977 + CCNA_00356 0.44 +0.3
372,990 - CCNA_00356 0.46 -0.6
372,996 + CCNA_00356 0.47 +3.3
373,004 - CCNA_00356 0.48 -1.2
373,027 - CCNA_00356 0.51 -2.3
373,032 + CCNA_00356 0.52 +0.5
373,040 + CCNA_00356 0.53 +0.2
373,043 - CCNA_00356 0.53 -1.6
373,079 + CCNA_00356 0.58 -0.8
373,087 - CCNA_00356 0.59 +0.2
373,118 - CCNA_00356 0.63 -0.6
373,156 + CCNA_00356 0.68 -1.7
373,160 - CCNA_00356 0.68 -0.2
373,162 - CCNA_00356 0.68 +2.6
373,172 + CCNA_00356 0.70 -0.5
373,187 + CCNA_00356 0.72 -2.0
373,190 - CCNA_00356 0.72 -1.7
373,192 + CCNA_00356 0.72 +0.8
373,200 - CCNA_00356 0.73 -0.4
373,290 + CCNA_00356 0.85 -1.1
373,321 + CCNA_00356 0.89 -0.8
373,331 + +1.0
373,418 + +0.2
373,418 + +1.4
373,418 + +0.4
373,418 + +0.3
373,418 + +0.1
373,418 + -0.7
373,426 - -1.1
373,426 - +0.6
373,426 - +0.4
373,449 - +1.2
373,458 + -0.2
373,458 + -1.0
373,458 + -0.7
373,458 + +0.3
373,458 + +0.7
373,458 + +0.7
373,458 + +2.1
373,458 + +0.2
373,458 + +0.7
373,458 + -0.2
373,466 - -0.7
373,466 - +1.0
373,478 - +1.8
373,478 - -0.7
373,497 + +1.9
373,499 + +0.6
373,499 + -0.4
373,515 - +0.3
373,525 + -0.1
373,525 + +1.7
373,525 + -0.5
373,533 - +0.4
373,533 - -2.1
373,552 + -0.3
373,562 + +0.5

Or see this region's nucleotide sequence