Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00351

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00349 and CCNA_00350 overlap by 4 nucleotidesCCNA_00350 and CCNA_00351 are separated by 125 nucleotidesCCNA_00351 and CCNA_00352 are separated by 86 nucleotides CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309 _00349 CCNA_00350: CCNA_00350 - hypothetical protein, at 365,306 to 365,986 _00350 CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271 _00351 CCNA_00352: CCNA_00352 - integral membrane protein, at 368,358 to 369,155 _00352 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 365.113 kb on - strand, within CCNA_00349at 365.118 kb on - strand, within CCNA_00349at 365.153 kb on - strand, within CCNA_00349at 365.165 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.189 kb on + strand, within CCNA_00349at 365.283 kb on + strandat 365.287 kb on + strandat 365.295 kb on - strandat 365.311 kb on + strandat 365.316 kb on + strandat 365.319 kb on - strandat 365.321 kb on + strandat 365.321 kb on + strandat 365.329 kb on - strandat 365.506 kb on + strand, within CCNA_00350at 365.735 kb on - strand, within CCNA_00350at 365.830 kb on + strand, within CCNA_00350at 366.008 kb on - strandat 366.009 kb on - strandat 366.080 kb on - strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.112 kb on + strandat 368.292 kb on - strandat 368.328 kb on + strandat 368.357 kb on + strandat 368.409 kb on - strandat 368.409 kb on - strandat 368.421 kb on - strandat 368.422 kb on - strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.448 kb on + strand, within CCNA_00352at 368.449 kb on + strand, within CCNA_00352at 368.451 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.457 kb on - strand, within CCNA_00352at 368.487 kb on + strand, within CCNA_00352at 368.500 kb on - strand, within CCNA_00352at 368.527 kb on + strand, within CCNA_00352at 368.559 kb on + strand, within CCNA_00352at 368.585 kb on + strandat 368.631 kb on + strand, within CCNA_00352at 368.638 kb on + strand, within CCNA_00352at 368.697 kb on - strand, within CCNA_00352at 368.721 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.744 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.756 kb on + strand, within CCNA_00352at 368.772 kb on + strand, within CCNA_00352at 368.845 kb on - strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.895 kb on - strand, within CCNA_00352at 368.912 kb on + strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 369.016 kb on - strand, within CCNA_00352at 369.022 kb on + strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.052 kb on - strand, within CCNA_00352at 369.080 kb on - strandat 369.080 kb on - strandat 369.115 kb on - strandat 369.125 kb on + strandat 369.166 kb on - strandat 369.168 kb on + strandat 369.179 kb on - strandat 369.196 kb on + strandat 369.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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365,113 - CCNA_00349 0.78 -1.8
365,118 - CCNA_00349 0.79 +1.5
365,153 - CCNA_00349 0.83 -1.1
365,165 + CCNA_00349 0.84 +0.1
365,166 + CCNA_00349 0.84 +0.8
365,166 + CCNA_00349 0.84 -1.3
365,174 - CCNA_00349 0.85 +2.5
365,174 - CCNA_00349 0.85 +0.1
365,189 + CCNA_00349 0.87 +0.5
365,283 + -0.3
365,287 + -0.8
365,295 - +2.2
365,311 + +0.7
365,316 + -0.2
365,319 - +1.6
365,321 + +1.0
365,321 + -0.4
365,329 - +1.3
365,506 + CCNA_00350 0.29 +3.1
365,735 - CCNA_00350 0.63 +2.0
365,830 + CCNA_00350 0.77 +1.1
366,008 - +3.3
366,009 - +1.5
366,080 - +0.3
366,103 + +0.3
366,103 + +1.1
366,103 + -0.6
366,112 + -0.6
368,292 - +0.7
368,328 + -0.2
368,357 + +0.2
368,409 - +4.0
368,409 - +3.7
368,421 - +4.2
368,422 - +4.0
368,433 + -0.2
368,433 + -1.2
368,433 + -1.8
368,433 + +0.2
368,433 + -2.1
368,441 - CCNA_00352 0.10 +4.3
368,441 - CCNA_00352 0.10 +4.5
368,441 - CCNA_00352 0.10 +4.0
368,441 - CCNA_00352 0.10 +4.2
368,441 - CCNA_00352 0.10 +4.1
368,441 - CCNA_00352 0.10 +4.3
368,441 - CCNA_00352 0.10 +3.9
368,441 - CCNA_00352 0.10 +3.4
368,441 - CCNA_00352 0.10 +4.0
368,441 - CCNA_00352 0.10 +4.2
368,448 + CCNA_00352 0.11 +0.7
368,449 + CCNA_00352 0.11 -2.3
368,451 - CCNA_00352 0.12 +3.5
368,456 - CCNA_00352 0.12 +2.8
368,456 - CCNA_00352 0.12 +3.1
368,457 - CCNA_00352 0.12 +3.2
368,487 + CCNA_00352 0.16 +0.7
368,500 - CCNA_00352 0.18 +3.9
368,527 + CCNA_00352 0.21 -0.2
368,559 + CCNA_00352 0.25 -0.3
368,585 + +3.0
368,631 + CCNA_00352 0.34 -0.7
368,638 + CCNA_00352 0.35 -1.0
368,697 - CCNA_00352 0.42 +2.6
368,721 + CCNA_00352 0.45 +0.5
368,737 + CCNA_00352 0.47 +0.3
368,737 + CCNA_00352 0.47 +0.7
368,744 - CCNA_00352 0.48 +2.1
368,745 - CCNA_00352 0.48 +2.8
368,745 - CCNA_00352 0.48 +3.3
368,745 - CCNA_00352 0.48 +2.6
368,745 - CCNA_00352 0.48 +2.9
368,756 + CCNA_00352 0.50 -1.4
368,772 + CCNA_00352 0.52 +0.5
368,845 - CCNA_00352 0.61 +0.7
368,848 + CCNA_00352 0.61 +1.1
368,848 + CCNA_00352 0.61 -0.8
368,895 - CCNA_00352 0.67 +0.4
368,912 + CCNA_00352 0.69 -0.0
368,921 - CCNA_00352 0.71 +1.5
368,921 - CCNA_00352 0.71 -0.8
368,979 - CCNA_00352 0.78 +1.5
368,979 - CCNA_00352 0.78 +1.0
368,979 - CCNA_00352 0.78 +1.3
368,989 - CCNA_00352 0.79 +2.7
368,989 - CCNA_00352 0.79 +2.3
369,016 - CCNA_00352 0.82 +3.3
369,022 + CCNA_00352 0.83 -0.8
369,030 - CCNA_00352 0.84 +3.6
369,030 - CCNA_00352 0.84 +2.2
369,052 - CCNA_00352 0.87 +2.2
369,080 - +1.7
369,080 - +3.3
369,115 - +1.5
369,125 + +0.1
369,166 - +2.4
369,168 + +1.4
369,179 - +1.9
369,196 + +0.8
369,204 + -1.4

Or see this region's nucleotide sequence