Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00346 and CCNA_00347 are separated by 89 nucleotides CCNA_00347 and CCNA_00348 are separated by 129 nucleotides
CCNA_00346: CCNA_00346 - dihydrolipoamide dehydrogenase, at 360,419 to 361,819
_00346
CCNA_00347: CCNA_00347 - hypothetical protein, at 361,909 to 362,088
_00347
CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221
_00348
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 361.827 kb on - strand at 361.865 kb on - strand at 361.991 kb on - strand, within CCNA_00347 at 362.006 kb on + strand, within CCNA_00347 at 362.008 kb on - strand, within CCNA_00347 at 362.010 kb on - strand, within CCNA_00347 at 362.096 kb on + strand at 362.179 kb on + strand at 362.196 kb on + strand at 362.204 kb on - strand at 362.258 kb on + strand at 362.258 kb on + strand at 362.267 kb on + strand at 362.328 kb on - strand at 362.437 kb on + strand, within CCNA_00348 at 362.544 kb on - strand, within CCNA_00348 at 362.546 kb on + strand, within CCNA_00348 at 362.554 kb on - strand, within CCNA_00348 at 362.577 kb on - strand, within CCNA_00348 at 362.577 kb on - strand, within CCNA_00348 at 362.601 kb on - strand, within CCNA_00348 at 362.662 kb on + strand, within CCNA_00348 at 362.730 kb on + strand, within CCNA_00348 at 362.738 kb on + strand, within CCNA_00348 at 362.746 kb on - strand, within CCNA_00348 at 362.746 kb on - strand, within CCNA_00348 at 362.770 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.787 kb on - strand, within CCNA_00348 at 362.934 kb on - strand, within CCNA_00348 at 362.937 kb on + strand, within CCNA_00348 at 362.967 kb on - strand, within CCNA_00348 at 363.009 kb on + strand, within CCNA_00348 at 363.009 kb on + strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.017 kb on - strand, within CCNA_00348 at 363.066 kb on - strand, within CCNA_00348
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 361,827 - +1.1 361,865 - +2.0 361,991 - CCNA_00347 0.46 +1.8 362,006 + CCNA_00347 0.54 +2.1 362,008 - CCNA_00347 0.55 +1.2 362,010 - CCNA_00347 0.56 +1.7 362,096 + +3.0 362,179 + +0.9 362,196 + +0.1 362,204 - +2.6 362,258 + -0.5 362,258 + +0.3 362,267 + +0.3 362,328 - +2.9 362,437 + CCNA_00348 0.11 +2.6 362,544 - CCNA_00348 0.16 +1.8 362,546 + CCNA_00348 0.16 +1.3 362,554 - CCNA_00348 0.17 +1.7 362,577 - CCNA_00348 0.18 +0.2 362,577 - CCNA_00348 0.18 +1.5 362,601 - CCNA_00348 0.19 +1.3 362,662 + CCNA_00348 0.22 +0.5 362,730 + CCNA_00348 0.26 +1.1 362,738 + CCNA_00348 0.26 +0.0 362,746 - CCNA_00348 0.26 +2.4 362,746 - CCNA_00348 0.26 +1.1 362,770 - CCNA_00348 0.28 -0.7 362,787 - CCNA_00348 0.28 +0.4 362,787 - CCNA_00348 0.28 +0.2 362,787 - CCNA_00348 0.28 +1.4 362,787 - CCNA_00348 0.28 +2.4 362,934 - CCNA_00348 0.36 +0.5 362,937 + CCNA_00348 0.36 -1.9 362,967 - CCNA_00348 0.37 +1.1 363,009 + CCNA_00348 0.39 +0.1 363,009 + CCNA_00348 0.39 -1.1 363,017 - CCNA_00348 0.40 +2.1 363,017 - CCNA_00348 0.40 +1.1 363,017 - CCNA_00348 0.40 +0.6 363,066 - CCNA_00348 0.42 -0.8
Or see this region's nucleotide sequence