Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00326 and CCNA_00327 are separated by 162 nucleotides CCNA_00327 and CCNA_00328 are separated by 84 nucleotides CCNA_00328 and CCNA_00329 are separated by 12 nucleotides
CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665
_00326
CCNA_00327: CCNA_00327 - FMN-binding nitroreductase family enzyme, at 339,828 to 340,490
_00327
CCNA_00328: CCNA_00328 - monofunctional biosynthetic peptidoglycan transglycosylase MtgA, at 340,575 to 341,264
_00328
CCNA_00329: CCNA_00329 - ribosomal-protein-alanine acetyltransferase, at 341,277 to 341,825
_00329
Position (kb)
339
340
341 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 338.850 kb on + strand, within CCNA_00326 at 338.881 kb on + strand, within CCNA_00326 at 338.941 kb on + strand, within CCNA_00326 at 338.946 kb on + strand, within CCNA_00326 at 338.997 kb on + strand, within CCNA_00326 at 339.005 kb on - strand, within CCNA_00326 at 339.016 kb on + strand, within CCNA_00326 at 339.042 kb on + strand, within CCNA_00326 at 339.046 kb on - strand, within CCNA_00326 at 339.050 kb on - strand, within CCNA_00326 at 339.096 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.138 kb on + strand, within CCNA_00326 at 339.146 kb on - strand, within CCNA_00326 at 339.146 kb on - strand, within CCNA_00326 at 339.146 kb on - strand, within CCNA_00326 at 339.191 kb on + strand, within CCNA_00326 at 339.289 kb on + strand, within CCNA_00326 at 339.308 kb on + strand, within CCNA_00326 at 339.308 kb on + strand, within CCNA_00326 at 339.317 kb on - strand, within CCNA_00326 at 339.327 kb on + strand, within CCNA_00326 at 339.347 kb on + strand, within CCNA_00326 at 339.347 kb on + strand, within CCNA_00326 at 339.355 kb on - strand, within CCNA_00326 at 339.415 kb on + strand, within CCNA_00326 at 339.423 kb on - strand, within CCNA_00326 at 339.468 kb on + strand, within CCNA_00326 at 339.468 kb on + strand, within CCNA_00326 at 339.485 kb on + strand, within CCNA_00326 at 339.485 kb on + strand, within CCNA_00326 at 339.485 kb on + strand, within CCNA_00326 at 339.488 kb on - strand, within CCNA_00326 at 339.493 kb on - strand, within CCNA_00326 at 339.493 kb on - strand, within CCNA_00326 at 339.501 kb on - strand, within CCNA_00326 at 339.524 kb on + strand, within CCNA_00326 at 339.531 kb on + strand, within CCNA_00326 at 339.532 kb on - strand, within CCNA_00326 at 339.532 kb on - strand, within CCNA_00326 at 339.539 kb on - strand, within CCNA_00326 at 339.590 kb on - strand at 339.626 kb on - strand at 339.629 kb on - strand at 339.660 kb on + strand at 339.661 kb on - strand at 339.681 kb on + strand at 339.691 kb on + strand at 339.699 kb on - strand at 339.735 kb on + strand at 339.769 kb on + strand at 339.769 kb on + strand at 339.791 kb on + strand at 339.806 kb on + strand at 339.806 kb on + strand at 339.806 kb on + strand at 339.814 kb on - strand at 339.816 kb on + strand at 339.875 kb on + strand at 339.915 kb on - strand, within CCNA_00327 at 339.925 kb on + strand, within CCNA_00327 at 339.941 kb on - strand, within CCNA_00327 at 339.953 kb on + strand, within CCNA_00327 at 339.982 kb on - strand, within CCNA_00327 at 339.982 kb on - strand, within CCNA_00327 at 339.982 kb on - strand, within CCNA_00327 at 339.997 kb on - strand, within CCNA_00327 at 340.006 kb on - strand, within CCNA_00327 at 340.008 kb on + strand, within CCNA_00327 at 340.008 kb on + strand, within CCNA_00327 at 340.008 kb on + strand, within CCNA_00327 at 340.044 kb on + strand, within CCNA_00327 at 340.045 kb on - strand, within CCNA_00327 at 340.053 kb on - strand, within CCNA_00327 at 340.053 kb on - strand, within CCNA_00327 at 340.066 kb on - strand, within CCNA_00327 at 340.074 kb on - strand, within CCNA_00327 at 340.079 kb on - strand, within CCNA_00327 at 340.131 kb on + strand, within CCNA_00327 at 340.169 kb on + strand, within CCNA_00327 at 340.177 kb on - strand, within CCNA_00327 at 340.177 kb on - strand, within CCNA_00327 at 340.177 kb on - strand, within CCNA_00327 at 340.194 kb on - strand, within CCNA_00327 at 340.198 kb on + strand, within CCNA_00327 at 340.200 kb on + strand, within CCNA_00327 at 340.200 kb on + strand, within CCNA_00327 at 340.206 kb on - strand, within CCNA_00327 at 340.206 kb on - strand, within CCNA_00327 at 340.206 kb on - strand, within CCNA_00327 at 340.225 kb on - strand, within CCNA_00327 at 340.243 kb on + strand, within CCNA_00327 at 340.251 kb on - strand, within CCNA_00327 at 340.251 kb on - strand, within CCNA_00327 at 340.272 kb on - strand, within CCNA_00327 at 340.274 kb on + strand, within CCNA_00327 at 340.280 kb on + strand, within CCNA_00327 at 340.288 kb on - strand, within CCNA_00327 at 340.291 kb on + strand, within CCNA_00327 at 340.292 kb on - strand, within CCNA_00327 at 340.338 kb on + strand, within CCNA_00327 at 340.353 kb on - strand, within CCNA_00327 at 340.353 kb on - strand, within CCNA_00327 at 340.353 kb on - strand, within CCNA_00327 at 340.359 kb on + strand, within CCNA_00327 at 340.396 kb on + strand, within CCNA_00327 at 340.396 kb on + strand, within CCNA_00327 at 340.418 kb on + strand, within CCNA_00327 at 340.426 kb on - strand at 340.475 kb on - strand at 340.486 kb on + strand at 340.507 kb on - strand at 340.521 kb on - strand at 340.521 kb on - strand at 340.545 kb on + strand at 340.554 kb on - strand at 340.572 kb on + strand at 340.614 kb on - strand at 340.694 kb on + strand, within CCNA_00328 at 340.711 kb on - strand, within CCNA_00328 at 340.713 kb on + strand, within CCNA_00328 at 340.713 kb on + strand, within CCNA_00328 at 340.721 kb on - strand, within CCNA_00328 at 340.751 kb on + strand, within CCNA_00328 at 340.751 kb on + strand, within CCNA_00328 at 340.765 kb on - strand, within CCNA_00328 at 340.805 kb on + strand, within CCNA_00328 at 340.837 kb on - strand, within CCNA_00328 at 340.849 kb on - strand, within CCNA_00328 at 340.877 kb on + strand, within CCNA_00328 at 340.907 kb on - strand, within CCNA_00328 at 340.942 kb on + strand, within CCNA_00328 at 340.942 kb on + strand, within CCNA_00328 at 340.947 kb on - strand, within CCNA_00328 at 340.956 kb on + strand, within CCNA_00328 at 340.956 kb on + strand, within CCNA_00328 at 340.956 kb on + strand, within CCNA_00328 at 340.957 kb on - strand, within CCNA_00328 at 340.964 kb on - strand, within CCNA_00328 at 340.977 kb on + strand, within CCNA_00328 at 340.982 kb on + strand, within CCNA_00328 at 340.982 kb on + strand, within CCNA_00328 at 340.982 kb on + strand, within CCNA_00328 at 340.991 kb on + strand, within CCNA_00328 at 341.021 kb on + strand, within CCNA_00328 at 341.023 kb on + strand, within CCNA_00328 at 341.052 kb on - strand, within CCNA_00328 at 341.081 kb on - strand, within CCNA_00328 at 341.088 kb on + strand, within CCNA_00328 at 341.106 kb on - strand, within CCNA_00328 at 341.114 kb on + strand, within CCNA_00328 at 341.114 kb on + strand, within CCNA_00328 at 341.116 kb on - strand, within CCNA_00328 at 341.126 kb on - strand, within CCNA_00328 at 341.139 kb on + strand, within CCNA_00328 at 341.139 kb on + strand, within CCNA_00328 at 341.147 kb on - strand, within CCNA_00328 at 341.147 kb on - strand, within CCNA_00328 at 341.149 kb on + strand, within CCNA_00328 at 341.152 kb on - strand, within CCNA_00328 at 341.157 kb on - strand, within CCNA_00328 at 341.178 kb on + strand, within CCNA_00328 at 341.185 kb on - strand, within CCNA_00328 at 341.219 kb on + strand at 341.224 kb on - strand at 341.246 kb on + strand at 341.250 kb on - strand at 341.259 kb on + strand at 341.259 kb on + strand at 341.259 kb on + strand at 341.259 kb on + strand at 341.266 kb on + strand at 341.267 kb on - strand at 341.267 kb on - strand at 341.289 kb on - strand at 341.322 kb on - strand at 341.351 kb on - strand, within CCNA_00329 at 341.351 kb on - strand, within CCNA_00329 at 341.351 kb on - strand, within CCNA_00329 at 341.351 kb on - strand, within CCNA_00329 at 341.351 kb on - strand, within CCNA_00329 at 341.366 kb on - strand, within CCNA_00329 at 341.403 kb on + strand, within CCNA_00329 at 341.421 kb on + strand, within CCNA_00329 at 341.429 kb on + strand, within CCNA_00329 at 341.457 kb on + strand, within CCNA_00329 at 341.465 kb on - strand, within CCNA_00329 at 341.475 kb on - strand, within CCNA_00329 at 341.485 kb on - strand, within CCNA_00329
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 338,850 + CCNA_00326 0.21 +2.5 338,881 + CCNA_00326 0.24 +0.9 338,941 + CCNA_00326 0.30 +0.1 338,946 + CCNA_00326 0.30 +0.2 338,997 + CCNA_00326 0.35 +1.6 339,005 - CCNA_00326 0.36 -0.4 339,016 + CCNA_00326 0.37 +0.9 339,042 + CCNA_00326 0.40 +0.9 339,046 - CCNA_00326 0.40 -1.5 339,050 - CCNA_00326 0.40 +1.0 339,096 + CCNA_00326 0.45 -0.6 339,138 + CCNA_00326 0.49 +0.5 339,138 + CCNA_00326 0.49 +1.0 339,138 + CCNA_00326 0.49 +2.8 339,138 + CCNA_00326 0.49 +1.4 339,138 + CCNA_00326 0.49 +1.3 339,138 + CCNA_00326 0.49 +0.8 339,138 + CCNA_00326 0.49 +1.4 339,146 - CCNA_00326 0.50 -1.2 339,146 - CCNA_00326 0.50 -0.9 339,146 - CCNA_00326 0.50 +1.0 339,191 + CCNA_00326 0.54 +1.1 339,289 + CCNA_00326 0.63 +0.7 339,308 + CCNA_00326 0.65 +1.1 339,308 + CCNA_00326 0.65 -0.9 339,317 - CCNA_00326 0.66 -0.5 339,327 + CCNA_00326 0.67 +0.6 339,347 + CCNA_00326 0.69 +1.1 339,347 + CCNA_00326 0.69 -0.9 339,355 - CCNA_00326 0.70 -0.2 339,415 + CCNA_00326 0.76 +1.0 339,423 - CCNA_00326 0.76 -0.5 339,468 + CCNA_00326 0.81 +1.4 339,468 + CCNA_00326 0.81 +1.4 339,485 + CCNA_00326 0.82 +0.4 339,485 + CCNA_00326 0.82 +1.6 339,485 + CCNA_00326 0.82 +1.5 339,488 - CCNA_00326 0.83 -2.1 339,493 - CCNA_00326 0.83 -0.3 339,493 - CCNA_00326 0.83 -0.2 339,501 - CCNA_00326 0.84 +0.7 339,524 + CCNA_00326 0.86 +1.0 339,531 + CCNA_00326 0.87 +2.1 339,532 - CCNA_00326 0.87 -1.3 339,532 - CCNA_00326 0.87 +1.0 339,539 - CCNA_00326 0.88 -1.0 339,590 - +1.2 339,626 - +0.7 339,629 - -1.0 339,660 + +1.7 339,661 - -0.7 339,681 + +1.2 339,691 + +1.2 339,699 - -0.1 339,735 + +1.8 339,769 + -0.6 339,769 + +0.9 339,791 + -0.2 339,806 + +1.5 339,806 + -0.1 339,806 + +0.5 339,814 - -0.5 339,816 + +1.2 339,875 + -1.1 339,915 - CCNA_00327 0.13 +0.5 339,925 + CCNA_00327 0.15 +1.7 339,941 - CCNA_00327 0.17 +0.7 339,953 + CCNA_00327 0.19 +0.6 339,982 - CCNA_00327 0.23 -1.3 339,982 - CCNA_00327 0.23 -1.0 339,982 - CCNA_00327 0.23 +1.0 339,997 - CCNA_00327 0.25 -0.3 340,006 - CCNA_00327 0.27 -0.8 340,008 + CCNA_00327 0.27 +0.0 340,008 + CCNA_00327 0.27 +0.1 340,008 + CCNA_00327 0.27 -1.8 340,044 + CCNA_00327 0.33 -1.1 340,045 - CCNA_00327 0.33 -1.1 340,053 - CCNA_00327 0.34 +0.3 340,053 - CCNA_00327 0.34 -0.9 340,066 - CCNA_00327 0.36 +0.0 340,074 - CCNA_00327 0.37 +0.7 340,079 - CCNA_00327 0.38 +0.0 340,131 + CCNA_00327 0.46 +0.1 340,169 + CCNA_00327 0.51 -1.0 340,177 - CCNA_00327 0.53 -0.6 340,177 - CCNA_00327 0.53 +0.3 340,177 - CCNA_00327 0.53 +0.4 340,194 - CCNA_00327 0.55 -0.5 340,198 + CCNA_00327 0.56 -1.3 340,200 + CCNA_00327 0.56 +0.8 340,200 + CCNA_00327 0.56 -0.6 340,206 - CCNA_00327 0.57 +1.3 340,206 - CCNA_00327 0.57 -0.6 340,206 - CCNA_00327 0.57 -0.9 340,225 - CCNA_00327 0.60 -1.2 340,243 + CCNA_00327 0.63 +0.2 340,251 - CCNA_00327 0.64 +1.2 340,251 - CCNA_00327 0.64 -2.2 340,272 - CCNA_00327 0.67 +0.8 340,274 + CCNA_00327 0.67 -1.0 340,280 + CCNA_00327 0.68 -1.2 340,288 - CCNA_00327 0.69 -0.9 340,291 + CCNA_00327 0.70 -1.3 340,292 - CCNA_00327 0.70 -0.8 340,338 + CCNA_00327 0.77 -1.4 340,353 - CCNA_00327 0.79 -0.6 340,353 - CCNA_00327 0.79 -1.8 340,353 - CCNA_00327 0.79 +0.1 340,359 + CCNA_00327 0.80 -0.3 340,396 + CCNA_00327 0.86 +0.0 340,396 + CCNA_00327 0.86 -2.8 340,418 + CCNA_00327 0.89 +1.4 340,426 - -2.0 340,475 - +1.7 340,486 + +2.1 340,507 - +1.5 340,521 - -0.5 340,521 - +1.9 340,545 + +1.2 340,554 - -0.8 340,572 + +0.3 340,614 - -0.1 340,694 + CCNA_00328 0.17 +0.5 340,711 - CCNA_00328 0.20 +1.9 340,713 + CCNA_00328 0.20 +0.7 340,713 + CCNA_00328 0.20 +0.8 340,721 - CCNA_00328 0.21 +2.7 340,751 + CCNA_00328 0.26 -0.5 340,751 + CCNA_00328 0.26 -1.8 340,765 - CCNA_00328 0.28 +0.7 340,805 + CCNA_00328 0.33 -0.8 340,837 - CCNA_00328 0.38 +0.8 340,849 - CCNA_00328 0.40 -0.1 340,877 + CCNA_00328 0.44 +0.7 340,907 - CCNA_00328 0.48 -0.4 340,942 + CCNA_00328 0.53 +0.8 340,942 + CCNA_00328 0.53 -0.5 340,947 - CCNA_00328 0.54 +2.6 340,956 + CCNA_00328 0.55 -0.2 340,956 + CCNA_00328 0.55 +1.3 340,956 + CCNA_00328 0.55 +0.9 340,957 - CCNA_00328 0.55 -1.1 340,964 - CCNA_00328 0.56 -0.9 340,977 + CCNA_00328 0.58 -0.4 340,982 + CCNA_00328 0.59 +2.1 340,982 + CCNA_00328 0.59 +1.0 340,982 + CCNA_00328 0.59 -0.1 340,991 + CCNA_00328 0.60 +0.3 341,021 + CCNA_00328 0.65 -0.4 341,023 + CCNA_00328 0.65 +2.2 341,052 - CCNA_00328 0.69 -1.4 341,081 - CCNA_00328 0.73 +1.3 341,088 + CCNA_00328 0.74 -0.4 341,106 - CCNA_00328 0.77 -0.2 341,114 + CCNA_00328 0.78 +0.4 341,114 + CCNA_00328 0.78 -0.9 341,116 - CCNA_00328 0.78 +1.1 341,126 - CCNA_00328 0.80 +0.0 341,139 + CCNA_00328 0.82 +0.5 341,139 + CCNA_00328 0.82 -1.1 341,147 - CCNA_00328 0.83 +0.1 341,147 - CCNA_00328 0.83 -0.6 341,149 + CCNA_00328 0.83 -0.8 341,152 - CCNA_00328 0.84 +0.2 341,157 - CCNA_00328 0.84 +0.4 341,178 + CCNA_00328 0.87 +1.5 341,185 - CCNA_00328 0.88 -0.8 341,219 + -0.3 341,224 - -0.6 341,246 + +0.4 341,250 - +0.3 341,259 + +1.6 341,259 + -0.4 341,259 + -0.1 341,259 + -0.3 341,266 + +0.9 341,267 - -1.2 341,267 - -0.5 341,289 - +0.5 341,322 - +0.8 341,351 - CCNA_00329 0.13 +0.2 341,351 - CCNA_00329 0.13 -0.5 341,351 - CCNA_00329 0.13 +0.5 341,351 - CCNA_00329 0.13 -0.8 341,351 - CCNA_00329 0.13 -0.7 341,366 - CCNA_00329 0.16 +0.7 341,403 + CCNA_00329 0.23 +1.6 341,421 + CCNA_00329 0.26 +0.8 341,429 + CCNA_00329 0.28 +2.1 341,457 + CCNA_00329 0.33 -0.4 341,465 - CCNA_00329 0.34 +1.2 341,475 - CCNA_00329 0.36 -0.5 341,485 - CCNA_00329 0.38 -2.3
Or see this region's nucleotide sequence