Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00323

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00321 and CCNA_00322 are separated by 203 nucleotidesCCNA_00322 and CCNA_00323 are separated by 42 nucleotidesCCNA_00323 and CCNA_00324 are separated by 203 nucleotidesCCNA_00324 and CCNA_00326 are separated by 243 nucleotides CCNA_00321: CCNA_00321 - LSU ribosomal protein L21P, at 335,240 to 335,755 _00321 CCNA_00322: CCNA_00322 - hypothetical protein, at 335,959 to 336,588 _00322 CCNA_00323: CCNA_00323 - low-affinity zinc transport protein, at 336,631 to 337,728 _00323 CCNA_00324: CCNA_00324 - ExbD-family protein, at 337,932 to 338,390 _00324 CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665 _00326 Position (kb) 336 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 335.853 kb on + strandat 335.878 kb on + strandat 335.910 kb on + strandat 335.962 kb on + strandat 336.044 kb on + strand, within CCNA_00322at 336.054 kb on + strand, within CCNA_00322at 336.069 kb on + strand, within CCNA_00322at 336.095 kb on + strand, within CCNA_00322at 336.116 kb on - strand, within CCNA_00322at 336.127 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.140 kb on + strand, within CCNA_00322at 336.148 kb on - strandat 336.148 kb on - strand, within CCNA_00322at 336.148 kb on - strand, within CCNA_00322at 336.151 kb on + strand, within CCNA_00322at 336.151 kb on + strand, within CCNA_00322at 336.151 kb on + strand, within CCNA_00322at 336.159 kb on - strand, within CCNA_00322at 336.266 kb on + strand, within CCNA_00322at 336.266 kb on + strand, within CCNA_00322at 336.294 kb on + strand, within CCNA_00322at 336.302 kb on + strand, within CCNA_00322at 336.302 kb on - strand, within CCNA_00322at 336.330 kb on + strand, within CCNA_00322at 336.333 kb on - strand, within CCNA_00322at 336.354 kb on + strand, within CCNA_00322at 336.354 kb on + strand, within CCNA_00322at 336.386 kb on + strand, within CCNA_00322at 336.386 kb on + strand, within CCNA_00322at 336.394 kb on - strand, within CCNA_00322at 336.396 kb on + strand, within CCNA_00322at 336.410 kb on + strand, within CCNA_00322at 336.418 kb on - strand, within CCNA_00322at 336.422 kb on + strand, within CCNA_00322at 336.435 kb on - strand, within CCNA_00322at 336.435 kb on - strand, within CCNA_00322at 336.470 kb on + strand, within CCNA_00322at 336.488 kb on - strand, within CCNA_00322at 336.492 kb on + strand, within CCNA_00322at 336.499 kb on + strand, within CCNA_00322at 336.504 kb on + strand, within CCNA_00322at 336.509 kb on + strandat 336.539 kb on + strandat 336.544 kb on + strandat 336.545 kb on + strandat 336.548 kb on + strandat 336.550 kb on + strandat 336.552 kb on - strandat 336.553 kb on - strandat 336.576 kb on + strandat 336.608 kb on + strandat 336.628 kb on + strandat 336.633 kb on + strandat 336.633 kb on + strandat 336.641 kb on - strandat 336.643 kb on + strandat 336.651 kb on - strandat 336.744 kb on + strand, within CCNA_00323at 336.744 kb on + strand, within CCNA_00323at 336.752 kb on - strand, within CCNA_00323at 336.785 kb on - strand, within CCNA_00323at 336.794 kb on + strand, within CCNA_00323at 336.812 kb on + strand, within CCNA_00323at 336.846 kb on + strand, within CCNA_00323at 336.854 kb on - strand, within CCNA_00323at 336.880 kb on + strand, within CCNA_00323at 336.893 kb on - strand, within CCNA_00323at 336.893 kb on - strand, within CCNA_00323at 336.908 kb on + strand, within CCNA_00323at 336.908 kb on + strand, within CCNA_00323at 336.961 kb on + strand, within CCNA_00323at 336.961 kb on + strand, within CCNA_00323at 337.021 kb on + strand, within CCNA_00323at 337.139 kb on + strand, within CCNA_00323at 337.141 kb on - strand, within CCNA_00323at 337.143 kb on + strand, within CCNA_00323at 337.170 kb on + strand, within CCNA_00323at 337.211 kb on - strand, within CCNA_00323at 337.281 kb on - strand, within CCNA_00323at 337.291 kb on - strand, within CCNA_00323at 337.338 kb on + strand, within CCNA_00323at 337.345 kb on - strand, within CCNA_00323at 337.365 kb on - strand, within CCNA_00323at 337.377 kb on + strand, within CCNA_00323at 337.436 kb on + strand, within CCNA_00323at 337.437 kb on + strand, within CCNA_00323at 337.493 kb on - strand, within CCNA_00323at 337.547 kb on - strand, within CCNA_00323at 337.570 kb on + strand, within CCNA_00323at 337.578 kb on - strand, within CCNA_00323at 337.594 kb on + strand, within CCNA_00323at 337.602 kb on - strand, within CCNA_00323at 337.604 kb on - strand, within CCNA_00323at 337.644 kb on - strandat 337.663 kb on + strandat 337.671 kb on - strandat 337.688 kb on + strandat 337.731 kb on + strandat 337.732 kb on + strandat 337.747 kb on - strandat 337.759 kb on + strandat 337.779 kb on - strandat 337.795 kb on + strandat 337.796 kb on + strandat 337.803 kb on + strandat 337.803 kb on + strandat 337.811 kb on - strandat 337.816 kb on - strandat 337.830 kb on + strandat 337.837 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.891 kb on - strandat 337.961 kb on + strandat 337.963 kb on - strandat 337.963 kb on - strandat 337.999 kb on + strand, within CCNA_00324at 337.999 kb on + strand, within CCNA_00324at 338.011 kb on + strand, within CCNA_00324at 338.228 kb on + strand, within CCNA_00324at 338.244 kb on + strand, within CCNA_00324at 338.252 kb on - strand, within CCNA_00324at 338.261 kb on - strand, within CCNA_00324at 338.309 kb on + strand, within CCNA_00324at 338.382 kb on + strandat 338.385 kb on - strandat 338.385 kb on - strandat 338.390 kb on - strandat 338.390 kb on - strandat 338.400 kb on - strandat 338.452 kb on + strandat 338.455 kb on - strandat 338.460 kb on - strandat 338.603 kb on - strandat 338.604 kb on - strandat 338.604 kb on - strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.626 kb on - strandat 338.626 kb on - strandat 338.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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335,853 + -0.9
335,878 + -0.9
335,910 + -0.2
335,962 + +2.1
336,044 + CCNA_00322 0.13 +3.1
336,054 + CCNA_00322 0.15 +2.8
336,069 + CCNA_00322 0.17 +2.9
336,095 + CCNA_00322 0.22 +3.9
336,116 - CCNA_00322 0.25 +0.1
336,127 + CCNA_00322 0.27 +1.7
336,140 + CCNA_00322 0.29 +2.6
336,140 + CCNA_00322 0.29 +3.4
336,140 + CCNA_00322 0.29 +3.1
336,140 + CCNA_00322 0.29 +3.1
336,140 + CCNA_00322 0.29 +3.0
336,140 + CCNA_00322 0.29 +3.0
336,140 + CCNA_00322 0.29 +2.9
336,140 + CCNA_00322 0.29 +3.4
336,140 + CCNA_00322 0.29 +3.1
336,140 + CCNA_00322 0.29 +2.9
336,148 - +1.7
336,148 - CCNA_00322 0.30 +0.2
336,148 - CCNA_00322 0.30 -0.2
336,151 + CCNA_00322 0.30 +2.5
336,151 + CCNA_00322 0.30 +2.8
336,151 + CCNA_00322 0.30 +3.3
336,159 - CCNA_00322 0.32 -1.3
336,266 + CCNA_00322 0.49 +2.9
336,266 + CCNA_00322 0.49 +2.7
336,294 + CCNA_00322 0.53 +3.0
336,302 + CCNA_00322 0.54 +3.0
336,302 - CCNA_00322 0.54 -0.0
336,330 + CCNA_00322 0.59 +2.0
336,333 - CCNA_00322 0.59 +1.4
336,354 + CCNA_00322 0.63 +2.5
336,354 + CCNA_00322 0.63 +2.5
336,386 + CCNA_00322 0.68 +2.8
336,386 + CCNA_00322 0.68 +2.5
336,394 - CCNA_00322 0.69 +1.7
336,396 + CCNA_00322 0.69 +2.3
336,410 + CCNA_00322 0.72 +2.1
336,418 - CCNA_00322 0.73 +1.2
336,422 + CCNA_00322 0.73 +2.0
336,435 - CCNA_00322 0.76 -1.1
336,435 - CCNA_00322 0.76 -0.8
336,470 + CCNA_00322 0.81 +3.8
336,488 - CCNA_00322 0.84 -0.3
336,492 + CCNA_00322 0.85 +2.0
336,499 + CCNA_00322 0.86 +2.8
336,504 + CCNA_00322 0.87 +3.1
336,509 + +2.0
336,539 + +2.5
336,544 + +2.9
336,545 + +2.2
336,548 + +2.1
336,550 + +1.9
336,552 - -2.1
336,553 - -0.3
336,576 + +2.3
336,608 + +1.0
336,628 + +1.2
336,633 + -0.3
336,633 + +0.4
336,641 - -0.2
336,643 + -0.3
336,651 - -1.5
336,744 + CCNA_00323 0.10 +1.0
336,744 + CCNA_00323 0.10 +2.6
336,752 - CCNA_00323 0.11 -1.0
336,785 - CCNA_00323 0.14 -0.7
336,794 + CCNA_00323 0.15 +1.6
336,812 + CCNA_00323 0.16 +0.6
336,846 + CCNA_00323 0.20 +0.2
336,854 - CCNA_00323 0.20 -0.8
336,880 + CCNA_00323 0.23 +1.2
336,893 - CCNA_00323 0.24 +0.4
336,893 - CCNA_00323 0.24 -0.3
336,908 + CCNA_00323 0.25 +0.9
336,908 + CCNA_00323 0.25 +2.3
336,961 + CCNA_00323 0.30 +1.3
336,961 + CCNA_00323 0.30 +2.1
337,021 + CCNA_00323 0.36 +0.8
337,139 + CCNA_00323 0.46 +1.7
337,141 - CCNA_00323 0.46 +1.4
337,143 + CCNA_00323 0.47 +0.6
337,170 + CCNA_00323 0.49 +1.7
337,211 - CCNA_00323 0.53 -1.3
337,281 - CCNA_00323 0.59 -0.6
337,291 - CCNA_00323 0.60 -0.1
337,338 + CCNA_00323 0.64 +1.5
337,345 - CCNA_00323 0.65 -0.8
337,365 - CCNA_00323 0.67 -1.6
337,377 + CCNA_00323 0.68 +1.4
337,436 + CCNA_00323 0.73 +1.8
337,437 + CCNA_00323 0.73 +1.9
337,493 - CCNA_00323 0.79 +2.0
337,547 - CCNA_00323 0.83 +0.4
337,570 + CCNA_00323 0.86 +2.6
337,578 - CCNA_00323 0.86 +1.0
337,594 + CCNA_00323 0.88 +2.7
337,602 - CCNA_00323 0.88 +1.3
337,604 - CCNA_00323 0.89 -0.6
337,644 - +2.2
337,663 + +3.1
337,671 - +0.3
337,688 + +2.7
337,731 + +2.8
337,732 + +3.1
337,747 - +0.0
337,759 + +2.7
337,779 - +0.5
337,795 + +2.7
337,796 + +1.7
337,803 + +3.1
337,803 + +2.5
337,811 - +1.7
337,816 - +0.3
337,830 + +1.0
337,837 + +2.5
337,842 + +2.5
337,842 + +2.8
337,842 + +2.4
337,842 + +3.6
337,850 - +0.8
337,850 - +1.6
337,850 - +1.2
337,891 - +4.4
337,961 + +0.8
337,963 - +5.5
337,963 - +5.6
337,999 + CCNA_00324 0.15 +2.0
337,999 + CCNA_00324 0.15 +0.7
338,011 + CCNA_00324 0.17 +0.5
338,228 + CCNA_00324 0.64 -0.2
338,244 + CCNA_00324 0.68 +0.0
338,252 - CCNA_00324 0.70 +3.8
338,261 - CCNA_00324 0.72 +4.1
338,309 + CCNA_00324 0.82 -0.0
338,382 + -0.8
338,385 - +3.1
338,385 - +3.5
338,390 - +3.5
338,390 - +3.3
338,400 - +6.0
338,452 + -0.4
338,455 - +4.4
338,460 - +2.5
338,603 - -0.5
338,604 - -1.3
338,604 - -1.9
338,618 + +0.3
338,618 + -0.7
338,618 + -1.7
338,618 + +0.8
338,618 + -2.1
338,626 - +0.7
338,626 - +0.4
338,626 - -0.4

Or see this region's nucleotide sequence