Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00298

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00296 and CCNA_00297 overlap by 28 nucleotidesCCNA_00297 and CCNA_00298 overlap by 4 nucleotidesCCNA_00298 and CCNA_00299 are separated by 11 nucleotides CCNA_00296: CCNA_00296 - phosphate regulon response regulator PhoB, at 310,374 to 311,066 _00296 CCNA_00297: CCNA_00297 - two-component response regulator, at 311,039 to 311,896 _00297 CCNA_00298: CCNA_00298 - hypothetical protein, at 311,893 to 312,666 _00298 CCNA_00299: CCNA_00299 - phosphoribosylamine--glycine ligase, at 312,678 to 313,961 _00299 Position (kb) 311 312 313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 310.919 kb on + strand, within CCNA_00296at 310.994 kb on - strand, within CCNA_00296at 311.023 kb on - strandat 311.048 kb on + strandat 311.069 kb on + strandat 311.069 kb on + strandat 311.069 kb on + strandat 311.076 kb on - strandat 311.077 kb on - strandat 311.078 kb on + strandat 311.099 kb on - strandat 311.113 kb on + strandat 311.113 kb on + strandat 311.113 kb on + strandat 311.121 kb on - strandat 311.121 kb on - strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.139 kb on + strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.150 kb on + strand, within CCNA_00297at 311.152 kb on - strand, within CCNA_00297at 311.152 kb on - strand, within CCNA_00297at 311.172 kb on + strand, within CCNA_00297at 311.186 kb on - strand, within CCNA_00297at 311.188 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.201 kb on - strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.210 kb on - strand, within CCNA_00297at 311.215 kb on - strand, within CCNA_00297at 311.245 kb on + strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.329 kb on - strand, within CCNA_00297at 311.329 kb on - strand, within CCNA_00297at 311.349 kb on + strand, within CCNA_00297at 311.360 kb on - strand, within CCNA_00297at 311.366 kb on + strand, within CCNA_00297at 311.381 kb on + strand, within CCNA_00297at 311.408 kb on + strand, within CCNA_00297at 311.408 kb on + strand, within CCNA_00297at 311.416 kb on - strand, within CCNA_00297at 311.416 kb on - strand, within CCNA_00297at 311.416 kb on - strand, within CCNA_00297at 311.416 kb on - strand, within CCNA_00297at 311.445 kb on + strand, within CCNA_00297at 311.453 kb on - strand, within CCNA_00297at 311.494 kb on - strand, within CCNA_00297at 311.577 kb on - strand, within CCNA_00297at 311.577 kb on - strand, within CCNA_00297at 311.594 kb on + strand, within CCNA_00297at 311.602 kb on - strand, within CCNA_00297at 311.602 kb on - strand, within CCNA_00297at 311.602 kb on - strand, within CCNA_00297at 311.632 kb on - strand, within CCNA_00297at 311.670 kb on + strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.690 kb on - strand, within CCNA_00297at 311.706 kb on - strand, within CCNA_00297at 311.741 kb on + strand, within CCNA_00297at 311.741 kb on + strand, within CCNA_00297at 311.751 kb on + strand, within CCNA_00297at 311.754 kb on - strand, within CCNA_00297at 311.765 kb on - strand, within CCNA_00297at 311.772 kb on + strand, within CCNA_00297at 311.775 kb on - strand, within CCNA_00297at 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.846 kb on + strandat 311.854 kb on - strandat 311.889 kb on + strandat 311.897 kb on - strandat 311.897 kb on - strandat 311.900 kb on + strandat 311.936 kb on + strandat 311.954 kb on + strandat 311.954 kb on + strandat 311.962 kb on + strandat 311.962 kb on + strandat 311.962 kb on - strandat 311.967 kb on + strandat 311.980 kb on - strand, within CCNA_00298at 312.004 kb on + strand, within CCNA_00298at 312.033 kb on + strand, within CCNA_00298at 312.041 kb on - strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.077 kb on + strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.085 kb on - strand, within CCNA_00298at 312.104 kb on + strand, within CCNA_00298at 312.111 kb on + strand, within CCNA_00298at 312.123 kb on + strand, within CCNA_00298at 312.137 kb on - strand, within CCNA_00298at 312.147 kb on - strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.155 kb on + strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.163 kb on - strand, within CCNA_00298at 312.168 kb on - strand, within CCNA_00298at 312.178 kb on - strand, within CCNA_00298at 312.180 kb on + strand, within CCNA_00298at 312.180 kb on + strandat 312.180 kb on + strand, within CCNA_00298at 312.187 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.188 kb on - strand, within CCNA_00298at 312.200 kb on - strand, within CCNA_00298at 312.215 kb on + strand, within CCNA_00298at 312.215 kb on - strand, within CCNA_00298at 312.222 kb on - strand, within CCNA_00298at 312.223 kb on - strand, within CCNA_00298at 312.259 kb on - strand, within CCNA_00298at 312.262 kb on + strand, within CCNA_00298at 312.303 kb on + strand, within CCNA_00298at 312.318 kb on - strand, within CCNA_00298at 312.319 kb on + strand, within CCNA_00298at 312.327 kb on - strand, within CCNA_00298at 312.350 kb on + strand, within CCNA_00298at 312.358 kb on - strand, within CCNA_00298at 312.387 kb on + strand, within CCNA_00298at 312.397 kb on + strand, within CCNA_00298at 312.405 kb on - strand, within CCNA_00298at 312.414 kb on + strand, within CCNA_00298at 312.415 kb on + strand, within CCNA_00298at 312.422 kb on - strand, within CCNA_00298at 312.423 kb on - strand, within CCNA_00298at 312.432 kb on + strand, within CCNA_00298at 312.434 kb on + strand, within CCNA_00298at 312.457 kb on + strandat 312.484 kb on - strand, within CCNA_00298at 312.510 kb on + strand, within CCNA_00298at 312.518 kb on - strand, within CCNA_00298at 312.529 kb on - strand, within CCNA_00298at 312.542 kb on - strand, within CCNA_00298at 312.542 kb on - strand, within CCNA_00298at 312.545 kb on + strand, within CCNA_00298at 312.553 kb on - strand, within CCNA_00298at 312.555 kb on - strand, within CCNA_00298at 312.568 kb on - strand, within CCNA_00298at 312.616 kb on - strandat 312.616 kb on - strandat 312.636 kb on - strandat 312.646 kb on - strandat 312.752 kb on - strandat 312.866 kb on - strand, within CCNA_00299at 312.892 kb on + strand, within CCNA_00299at 312.900 kb on - strand, within CCNA_00299at 312.952 kb on + strand, within CCNA_00299at 312.988 kb on + strand, within CCNA_00299at 312.996 kb on - strand, within CCNA_00299at 313.080 kb on + strand, within CCNA_00299at 313.090 kb on + strand, within CCNA_00299at 313.117 kb on - strand, within CCNA_00299at 313.141 kb on - strand, within CCNA_00299at 313.165 kb on + strand, within CCNA_00299at 313.188 kb on + strand, within CCNA_00299at 313.234 kb on - strand, within CCNA_00299at 313.250 kb on - strand, within CCNA_00299at 313.309 kb on - strand, within CCNA_00299at 313.311 kb on + strandat 313.319 kb on - strand, within CCNA_00299at 313.319 kb on - strand, within CCNA_00299at 313.410 kb on + strand, within CCNA_00299at 313.415 kb on + strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.423 kb on - strand, within CCNA_00299at 313.484 kb on + strand, within CCNA_00299at 313.492 kb on - strand, within CCNA_00299at 313.523 kb on - strand, within CCNA_00299at 313.532 kb on + strand, within CCNA_00299at 313.551 kb on - strand, within CCNA_00299at 313.567 kb on + strand, within CCNA_00299at 313.569 kb on - strand, within CCNA_00299at 313.575 kb on - strand, within CCNA_00299at 313.596 kb on + strand, within CCNA_00299at 313.631 kb on + strand, within CCNA_00299

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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310,919 + CCNA_00296 0.79 +3.4
310,994 - CCNA_00296 0.89 +3.4
311,023 - +3.7
311,048 + +0.6
311,069 + -0.2
311,069 + +1.0
311,069 + +0.4
311,076 - -0.3
311,077 - -0.0
311,078 + +2.0
311,099 - -0.1
311,113 + +1.1
311,113 + +0.6
311,113 + -0.3
311,121 - -1.4
311,121 - -2.5
311,124 + +0.7
311,124 + +0.0
311,124 + -0.5
311,139 + CCNA_00297 0.12 +0.4
311,144 + CCNA_00297 0.12 +1.6
311,150 + CCNA_00297 0.13 +0.4
311,152 - CCNA_00297 0.13 -0.6
311,152 - CCNA_00297 0.13 +0.6
311,172 + CCNA_00297 0.16 +0.3
311,186 - CCNA_00297 0.17 -1.2
311,188 + CCNA_00297 0.17 -0.2
311,193 + CCNA_00297 0.18 +0.6
311,193 + CCNA_00297 0.18 +0.6
311,201 - CCNA_00297 0.19 +2.6
311,207 + CCNA_00297 0.20 +1.2
311,207 + CCNA_00297 0.20 +1.6
311,207 + CCNA_00297 0.20 +1.5
311,210 - CCNA_00297 0.20 -1.5
311,215 - CCNA_00297 0.21 -0.2
311,245 + CCNA_00297 0.24 +0.6
311,265 - CCNA_00297 0.26 +1.8
311,265 - CCNA_00297 0.26 +2.4
311,265 - CCNA_00297 0.26 +1.6
311,267 + CCNA_00297 0.27 -0.3
311,267 + CCNA_00297 0.27 -1.5
311,267 + CCNA_00297 0.27 -0.6
311,275 - CCNA_00297 0.28 -1.8
311,275 - CCNA_00297 0.28 +0.6
311,275 - CCNA_00297 0.28 -0.5
311,275 - CCNA_00297 0.28 +0.2
311,275 - CCNA_00297 0.28 +2.9
311,282 + CCNA_00297 0.28 -0.8
311,282 + CCNA_00297 0.28 -0.0
311,290 - CCNA_00297 0.29 -1.0
311,290 - CCNA_00297 0.29 +0.3
311,329 - CCNA_00297 0.34 -0.6
311,329 - CCNA_00297 0.34 +0.4
311,349 + CCNA_00297 0.36 -1.0
311,360 - CCNA_00297 0.37 -0.8
311,366 + CCNA_00297 0.38 -0.4
311,381 + CCNA_00297 0.40 +1.9
311,408 + CCNA_00297 0.43 -1.1
311,408 + CCNA_00297 0.43 +0.2
311,416 - CCNA_00297 0.44 -0.4
311,416 - CCNA_00297 0.44 +0.4
311,416 - CCNA_00297 0.44 +1.3
311,416 - CCNA_00297 0.44 +0.6
311,445 + CCNA_00297 0.47 -1.2
311,453 - CCNA_00297 0.48 +0.1
311,494 - CCNA_00297 0.53 +0.2
311,577 - CCNA_00297 0.63 +0.3
311,577 - CCNA_00297 0.63 +1.8
311,594 + CCNA_00297 0.65 +1.6
311,602 - CCNA_00297 0.66 +0.2
311,602 - CCNA_00297 0.66 -0.6
311,602 - CCNA_00297 0.66 +1.5
311,632 - CCNA_00297 0.69 +0.9
311,670 + CCNA_00297 0.74 +1.3
311,690 - CCNA_00297 0.76 -0.2
311,690 - CCNA_00297 0.76 -1.9
311,690 - CCNA_00297 0.76 +0.2
311,706 - CCNA_00297 0.78 +0.9
311,741 + CCNA_00297 0.82 -0.2
311,741 + CCNA_00297 0.82 +0.4
311,751 + CCNA_00297 0.83 -1.1
311,754 - CCNA_00297 0.83 +0.3
311,765 - CCNA_00297 0.85 -1.1
311,772 + CCNA_00297 0.85 -0.9
311,775 - CCNA_00297 0.86 -1.0
311,846 + -1.8
311,846 + -0.6
311,846 + -1.1
311,846 + +1.1
311,854 - -1.1
311,889 + +0.2
311,897 - -1.0
311,897 - +1.7
311,900 + -0.2
311,936 + -0.8
311,954 + +0.1
311,954 + +1.1
311,962 + +1.8
311,962 + +1.1
311,962 - -1.0
311,967 + +0.7
311,980 - CCNA_00298 0.11 -3.0
312,004 + CCNA_00298 0.14 +1.1
312,033 + CCNA_00298 0.18 +0.6
312,041 - CCNA_00298 0.19 -0.1
312,077 + CCNA_00298 0.24 -0.4
312,077 + CCNA_00298 0.24 -1.2
312,085 - CCNA_00298 0.25 -1.9
312,085 - CCNA_00298 0.25 -1.7
312,085 - CCNA_00298 0.25 -0.7
312,104 + CCNA_00298 0.27 -0.8
312,111 + CCNA_00298 0.28 -0.8
312,123 + CCNA_00298 0.30 -0.3
312,137 - CCNA_00298 0.32 +0.0
312,147 - CCNA_00298 0.33 -1.0
312,155 + CCNA_00298 0.34 -1.2
312,155 + CCNA_00298 0.34 -1.5
312,155 + CCNA_00298 0.34 +0.8
312,155 + CCNA_00298 0.34 -0.8
312,163 - CCNA_00298 0.35 -1.6
312,163 - CCNA_00298 0.35 -0.6
312,163 - CCNA_00298 0.35 -1.3
312,163 - CCNA_00298 0.35 -1.3
312,168 - CCNA_00298 0.36 -1.0
312,178 - CCNA_00298 0.37 +0.3
312,180 + CCNA_00298 0.37 -0.5
312,180 + +2.9
312,180 + CCNA_00298 0.37 -0.5
312,187 - CCNA_00298 0.38 +0.9
312,188 - CCNA_00298 0.38 +1.9
312,188 - CCNA_00298 0.38 -1.4
312,188 - CCNA_00298 0.38 -0.2
312,188 - CCNA_00298 0.38 +1.6
312,200 - CCNA_00298 0.40 +2.3
312,215 + CCNA_00298 0.42 -2.5
312,215 - CCNA_00298 0.42 +0.4
312,222 - CCNA_00298 0.43 -1.1
312,223 - CCNA_00298 0.43 -2.5
312,259 - CCNA_00298 0.47 -0.9
312,262 + CCNA_00298 0.48 +1.9
312,303 + CCNA_00298 0.53 +1.6
312,318 - CCNA_00298 0.55 +0.1
312,319 + CCNA_00298 0.55 +0.4
312,327 - CCNA_00298 0.56 +2.6
312,350 + CCNA_00298 0.59 -0.7
312,358 - CCNA_00298 0.60 -1.1
312,387 + CCNA_00298 0.64 -1.0
312,397 + CCNA_00298 0.65 +0.3
312,405 - CCNA_00298 0.66 -1.5
312,414 + CCNA_00298 0.67 +0.2
312,415 + CCNA_00298 0.67 -0.6
312,422 - CCNA_00298 0.68 +1.5
312,423 - CCNA_00298 0.68 +0.6
312,432 + CCNA_00298 0.70 +1.1
312,434 + CCNA_00298 0.70 -0.6
312,457 + +1.1
312,484 - CCNA_00298 0.76 +0.1
312,510 + CCNA_00298 0.80 +0.3
312,518 - CCNA_00298 0.81 -2.1
312,529 - CCNA_00298 0.82 -1.7
312,542 - CCNA_00298 0.84 -1.4
312,542 - CCNA_00298 0.84 -0.4
312,545 + CCNA_00298 0.84 -1.2
312,553 - CCNA_00298 0.85 +0.8
312,555 - CCNA_00298 0.86 +0.1
312,568 - CCNA_00298 0.87 -0.5
312,616 - -1.8
312,616 - -2.0
312,636 - -0.9
312,646 - +0.6
312,752 - -0.6
312,866 - CCNA_00299 0.15 +0.7
312,892 + CCNA_00299 0.17 +3.2
312,900 - CCNA_00299 0.17 -0.6
312,952 + CCNA_00299 0.21 +1.6
312,988 + CCNA_00299 0.24 +2.2
312,996 - CCNA_00299 0.25 +1.1
313,080 + CCNA_00299 0.31 +1.7
313,090 + CCNA_00299 0.32 +2.8
313,117 - CCNA_00299 0.34 -0.1
313,141 - CCNA_00299 0.36 +1.1
313,165 + CCNA_00299 0.38 -0.1
313,188 + CCNA_00299 0.40 +3.1
313,234 - CCNA_00299 0.43 -0.3
313,250 - CCNA_00299 0.45 -0.5
313,309 - CCNA_00299 0.49 +2.2
313,311 + +2.6
313,319 - CCNA_00299 0.50 +1.6
313,319 - CCNA_00299 0.50 +2.3
313,410 + CCNA_00299 0.57 +3.2
313,415 + CCNA_00299 0.57 -0.4
313,423 - CCNA_00299 0.58 +2.9
313,423 - CCNA_00299 0.58 -0.9
313,423 - CCNA_00299 0.58 +2.1
313,423 - CCNA_00299 0.58 +1.6
313,484 + CCNA_00299 0.63 +1.8
313,492 - CCNA_00299 0.63 +2.1
313,523 - CCNA_00299 0.66 +1.9
313,532 + CCNA_00299 0.67 +2.8
313,551 - CCNA_00299 0.68 +0.2
313,567 + CCNA_00299 0.69 +3.0
313,569 - CCNA_00299 0.69 +2.1
313,575 - CCNA_00299 0.70 +0.6
313,596 + CCNA_00299 0.71 -0.0
313,631 + CCNA_00299 0.74 +2.9

Or see this region's nucleotide sequence