Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00295

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00293 and CCNA_00294 are separated by 59 nucleotidesCCNA_00294 and CCNA_00295 are separated by 25 nucleotidesCCNA_00295 and CCNA_00296 are separated by 21 nucleotidesCCNA_00296 and CCNA_00297 overlap by 28 nucleotides CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750 _00293 CCNA_00294: CCNA_00294 - phosphate transport ATP-binding protein pstB, at 308,810 to 309,634 _00294 CCNA_00295: CCNA_00295 - phosphate transport system protein phoU, at 309,660 to 310,352 _00295 CCNA_00296: CCNA_00296 - phosphate regulon response regulator PhoB, at 310,374 to 311,066 _00296 CCNA_00297: CCNA_00297 - two-component response regulator, at 311,039 to 311,896 _00297 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 308.704 kb on - strandat 308.750 kb on + strandat 308.786 kb on - strandat 308.802 kb on - strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.806 kb on + strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.814 kb on - strandat 308.929 kb on + strand, within CCNA_00294at 309.555 kb on + strandat 309.633 kb on + strandat 310.315 kb on + strandat 310.324 kb on + strandat 310.347 kb on + strandat 310.353 kb on + strandat 310.401 kb on + strandat 310.410 kb on + strandat 310.418 kb on - strandat 310.418 kb on - strandat 310.423 kb on - strandat 310.454 kb on - strand, within CCNA_00296at 310.484 kb on - strand, within CCNA_00296at 310.493 kb on - strand, within CCNA_00296at 310.549 kb on - strand, within CCNA_00296at 310.549 kb on - strand, within CCNA_00296at 310.602 kb on + strand, within CCNA_00296at 310.602 kb on + strand, within CCNA_00296at 310.723 kb on + strand, within CCNA_00296at 310.723 kb on + strand, within CCNA_00296at 310.731 kb on - strand, within CCNA_00296at 310.731 kb on - strand, within CCNA_00296at 310.757 kb on - strand, within CCNA_00296at 310.834 kb on + strand, within CCNA_00296at 310.840 kb on + strand, within CCNA_00296at 310.870 kb on - strand, within CCNA_00296at 310.892 kb on + strand, within CCNA_00296at 310.919 kb on + strand, within CCNA_00296at 310.994 kb on - strand, within CCNA_00296at 311.023 kb on - strandat 311.048 kb on + strandat 311.069 kb on + strandat 311.069 kb on + strandat 311.069 kb on + strandat 311.076 kb on - strandat 311.077 kb on - strandat 311.078 kb on + strandat 311.099 kb on - strandat 311.113 kb on + strandat 311.113 kb on + strandat 311.113 kb on + strandat 311.121 kb on - strandat 311.121 kb on - strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.124 kb on + strandat 311.139 kb on + strand, within CCNA_00297at 311.144 kb on + strand, within CCNA_00297at 311.150 kb on + strand, within CCNA_00297at 311.152 kb on - strand, within CCNA_00297at 311.152 kb on - strand, within CCNA_00297at 311.172 kb on + strand, within CCNA_00297at 311.186 kb on - strand, within CCNA_00297at 311.188 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.193 kb on + strand, within CCNA_00297at 311.201 kb on - strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.207 kb on + strand, within CCNA_00297at 311.210 kb on - strand, within CCNA_00297at 311.215 kb on - strand, within CCNA_00297at 311.245 kb on + strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.265 kb on - strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.267 kb on + strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.275 kb on - strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.282 kb on + strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.290 kb on - strand, within CCNA_00297at 311.329 kb on - strand, within CCNA_00297at 311.329 kb on - strand, within CCNA_00297at 311.349 kb on + strand, within CCNA_00297

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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308,704 - -0.8
308,750 + +1.2
308,786 - +1.1
308,802 - -0.2
308,806 + +0.8
308,806 + +0.9
308,806 + +2.4
308,806 + +1.2
308,806 + -1.7
308,806 + +0.8
308,806 + +0.5
308,806 + +1.0
308,806 + +2.1
308,806 + +0.7
308,806 + +0.9
308,814 - -1.0
308,814 - -0.8
308,814 - -0.7
308,814 - -0.9
308,814 - -0.6
308,814 - -1.0
308,814 - +1.1
308,814 - +0.4
308,929 + CCNA_00294 0.14 -0.0
309,555 + +2.1
309,633 + +1.4
310,315 + -0.4
310,324 + -0.9
310,347 + +1.3
310,353 + -0.3
310,401 + +2.1
310,410 + +2.9
310,418 - +2.0
310,418 - +2.2
310,423 - +2.3
310,454 - CCNA_00296 0.12 +2.7
310,484 - CCNA_00296 0.16 +2.6
310,493 - CCNA_00296 0.17 +3.1
310,549 - CCNA_00296 0.25 +3.9
310,549 - CCNA_00296 0.25 +1.9
310,602 + CCNA_00296 0.33 +3.5
310,602 + CCNA_00296 0.33 +3.1
310,723 + CCNA_00296 0.50 +3.0
310,723 + CCNA_00296 0.50 +3.3
310,731 - CCNA_00296 0.52 +3.6
310,731 - CCNA_00296 0.52 +2.3
310,757 - CCNA_00296 0.55 +1.7
310,834 + CCNA_00296 0.66 +2.8
310,840 + CCNA_00296 0.67 +2.8
310,870 - CCNA_00296 0.72 +3.3
310,892 + CCNA_00296 0.75 +1.8
310,919 + CCNA_00296 0.79 +3.4
310,994 - CCNA_00296 0.89 +3.4
311,023 - +3.7
311,048 + +0.6
311,069 + -0.2
311,069 + +1.0
311,069 + +0.4
311,076 - -0.3
311,077 - -0.0
311,078 + +2.0
311,099 - -0.1
311,113 + +1.1
311,113 + +0.6
311,113 + -0.3
311,121 - -1.4
311,121 - -2.5
311,124 + +0.7
311,124 + +0.0
311,124 + -0.5
311,139 + CCNA_00297 0.12 +0.4
311,144 + CCNA_00297 0.12 +1.6
311,150 + CCNA_00297 0.13 +0.4
311,152 - CCNA_00297 0.13 -0.6
311,152 - CCNA_00297 0.13 +0.6
311,172 + CCNA_00297 0.16 +0.3
311,186 - CCNA_00297 0.17 -1.2
311,188 + CCNA_00297 0.17 -0.2
311,193 + CCNA_00297 0.18 +0.6
311,193 + CCNA_00297 0.18 +0.6
311,201 - CCNA_00297 0.19 +2.6
311,207 + CCNA_00297 0.20 +1.2
311,207 + CCNA_00297 0.20 +1.6
311,207 + CCNA_00297 0.20 +1.5
311,210 - CCNA_00297 0.20 -1.5
311,215 - CCNA_00297 0.21 -0.2
311,245 + CCNA_00297 0.24 +0.6
311,265 - CCNA_00297 0.26 +1.8
311,265 - CCNA_00297 0.26 +2.4
311,265 - CCNA_00297 0.26 +1.6
311,267 + CCNA_00297 0.27 -0.3
311,267 + CCNA_00297 0.27 -1.5
311,267 + CCNA_00297 0.27 -0.6
311,275 - CCNA_00297 0.28 -1.8
311,275 - CCNA_00297 0.28 +0.6
311,275 - CCNA_00297 0.28 -0.5
311,275 - CCNA_00297 0.28 +0.2
311,275 - CCNA_00297 0.28 +2.9
311,282 + CCNA_00297 0.28 -0.8
311,282 + CCNA_00297 0.28 -0.0
311,290 - CCNA_00297 0.29 -1.0
311,290 - CCNA_00297 0.29 +0.3
311,329 - CCNA_00297 0.34 -0.6
311,329 - CCNA_00297 0.34 +0.4
311,349 + CCNA_00297 0.36 -1.0

Or see this region's nucleotide sequence