Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00289

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00288 and CCNA_00289 are separated by 14 nucleotidesCCNA_00289 and CCNA_00290 are separated by 250 nucleotides CCNA_00288: CCNA_00288 - ABC-type sulfate transport system, periplasmic component, at 299,485 to 300,534 _00288 CCNA_00289: CCNA_00289 - hypothetical protein, at 300,549 to 300,797 _00289 CCNA_00290: CCNA_00290 - autotransporter protein, at 301,048 to 304,305 _00290 Position (kb) 300 301Strain fitness (log2 ratio) -2 -1 0 1 2 3at 299.556 kb on + strandat 299.556 kb on + strandat 299.556 kb on + strandat 299.564 kb on - strandat 299.580 kb on + strandat 299.591 kb on + strand, within CCNA_00288at 299.592 kb on + strand, within CCNA_00288at 299.599 kb on - strand, within CCNA_00288at 299.620 kb on + strand, within CCNA_00288at 299.627 kb on + strand, within CCNA_00288at 299.628 kb on - strand, within CCNA_00288at 299.647 kb on - strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.654 kb on + strand, within CCNA_00288at 299.689 kb on + strand, within CCNA_00288at 299.693 kb on + strand, within CCNA_00288at 299.697 kb on - strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.698 kb on + strand, within CCNA_00288at 299.706 kb on - strand, within CCNA_00288at 299.754 kb on - strand, within CCNA_00288at 299.783 kb on + strand, within CCNA_00288at 299.786 kb on - strand, within CCNA_00288at 299.792 kb on + strand, within CCNA_00288at 299.810 kb on - strand, within CCNA_00288at 299.848 kb on + strand, within CCNA_00288at 299.874 kb on + strand, within CCNA_00288at 299.882 kb on - strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.908 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.924 kb on + strand, within CCNA_00288at 299.932 kb on - strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.948 kb on + strand, within CCNA_00288at 299.955 kb on - strand, within CCNA_00288at 299.962 kb on - strand, within CCNA_00288at 299.987 kb on + strand, within CCNA_00288at 300.047 kb on - strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.080 kb on + strand, within CCNA_00288at 300.125 kb on - strand, within CCNA_00288at 300.136 kb on + strand, within CCNA_00288at 300.152 kb on - strand, within CCNA_00288at 300.188 kb on + strand, within CCNA_00288at 300.243 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.267 kb on - strand, within CCNA_00288at 300.303 kb on + strand, within CCNA_00288at 300.321 kb on + strand, within CCNA_00288at 300.324 kb on - strand, within CCNA_00288at 300.329 kb on - strand, within CCNA_00288at 300.356 kb on + strand, within CCNA_00288at 300.364 kb on - strand, within CCNA_00288at 300.373 kb on - strand, within CCNA_00288at 300.373 kb on - strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.387 kb on + strand, within CCNA_00288at 300.395 kb on - strand, within CCNA_00288at 300.406 kb on - strand, within CCNA_00288at 300.416 kb on - strand, within CCNA_00288at 300.421 kb on + strand, within CCNA_00288at 300.422 kb on + strand, within CCNA_00288at 300.429 kb on - strand, within CCNA_00288at 300.429 kb on - strand, within CCNA_00288at 300.440 kb on - strandat 300.499 kb on + strandat 300.572 kb on + strandat 300.599 kb on - strand, within CCNA_00289at 300.599 kb on - strand, within CCNA_00289at 300.622 kb on + strand, within CCNA_00289at 300.660 kb on + strand, within CCNA_00289at 300.711 kb on + strand, within CCNA_00289at 300.712 kb on + strand, within CCNA_00289at 300.716 kb on + strand, within CCNA_00289at 300.720 kb on - strand, within CCNA_00289at 300.720 kb on - strand, within CCNA_00289at 300.735 kb on - strand, within CCNA_00289at 300.746 kb on + strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.754 kb on - strand, within CCNA_00289at 300.806 kb on - strandat 301.004 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.046 kb on + strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.054 kb on - strandat 301.075 kb on - strandat 301.117 kb on + strandat 301.143 kb on + strandat 301.143 kb on + strandat 301.151 kb on - strandat 301.151 kb on - strandat 301.201 kb on - strandat 301.201 kb on - strandat 301.228 kb on - strandat 301.228 kb on - strandat 301.228 kb on - strandat 301.240 kb on + strandat 301.248 kb on - strandat 301.248 kb on - strandat 301.302 kb on - strandat 301.303 kb on - strandat 301.303 kb on - strandat 301.333 kb on + strandat 301.420 kb on - strand, within CCNA_00290at 301.434 kb on - strand, within CCNA_00290at 301.436 kb on - strand, within CCNA_00290at 301.499 kb on + strand, within CCNA_00290at 301.535 kb on - strand, within CCNA_00290at 301.540 kb on + strand, within CCNA_00290at 301.618 kb on + strand, within CCNA_00290at 301.618 kb on + strand, within CCNA_00290at 301.626 kb on - strand, within CCNA_00290at 301.626 kb on - strand, within CCNA_00290at 301.626 kb on - strand, within CCNA_00290at 301.673 kb on + strand, within CCNA_00290at 301.678 kb on + strand, within CCNA_00290at 301.686 kb on - strand, within CCNA_00290at 301.694 kb on + strand, within CCNA_00290at 301.706 kb on + strand, within CCNA_00290at 301.752 kb on - strand, within CCNA_00290at 301.758 kb on - strand, within CCNA_00290at 301.764 kb on - strand, within CCNA_00290at 301.765 kb on - strand, within CCNA_00290at 301.769 kb on - strand, within CCNA_00290

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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299,556 + -0.3
299,556 + -0.7
299,556 + +1.3
299,564 - +1.7
299,580 + -0.7
299,591 + CCNA_00288 0.10 -0.4
299,592 + CCNA_00288 0.10 -0.5
299,599 - CCNA_00288 0.11 -1.3
299,620 + CCNA_00288 0.13 -0.5
299,627 + CCNA_00288 0.14 -0.3
299,628 - CCNA_00288 0.14 +1.5
299,647 - CCNA_00288 0.15 -0.3
299,654 + CCNA_00288 0.16 -1.0
299,654 + CCNA_00288 0.16 -1.7
299,689 + CCNA_00288 0.19 -0.9
299,693 + CCNA_00288 0.20 -0.3
299,697 - CCNA_00288 0.20 +2.5
299,698 + CCNA_00288 0.20 -0.1
299,698 + CCNA_00288 0.20 -1.4
299,706 - CCNA_00288 0.21 +1.8
299,754 - CCNA_00288 0.26 -0.8
299,783 + CCNA_00288 0.28 -0.1
299,786 - CCNA_00288 0.29 +1.1
299,792 + CCNA_00288 0.29 +1.2
299,810 - CCNA_00288 0.31 +2.0
299,848 + CCNA_00288 0.35 -0.9
299,874 + CCNA_00288 0.37 -0.7
299,882 - CCNA_00288 0.38 +0.5
299,908 + CCNA_00288 0.40 -1.1
299,908 + CCNA_00288 0.40 -0.0
299,924 + CCNA_00288 0.42 +1.3
299,924 + CCNA_00288 0.42 +1.6
299,932 - CCNA_00288 0.43 -1.5
299,948 + CCNA_00288 0.44 -0.8
299,948 + CCNA_00288 0.44 +0.7
299,955 - CCNA_00288 0.45 +0.2
299,962 - CCNA_00288 0.45 +0.4
299,987 + CCNA_00288 0.48 -1.3
300,047 - CCNA_00288 0.54 +1.0
300,080 + CCNA_00288 0.57 +1.2
300,080 + CCNA_00288 0.57 +1.5
300,125 - CCNA_00288 0.61 -0.6
300,136 + CCNA_00288 0.62 -0.1
300,152 - CCNA_00288 0.64 +0.7
300,188 + CCNA_00288 0.67 -1.2
300,243 - CCNA_00288 0.72 +0.5
300,267 - CCNA_00288 0.74 -0.3
300,267 - CCNA_00288 0.74 -0.4
300,267 - CCNA_00288 0.74 +0.6
300,267 - CCNA_00288 0.74 +0.3
300,303 + CCNA_00288 0.78 +2.6
300,321 + CCNA_00288 0.80 -2.3
300,324 - CCNA_00288 0.80 -1.9
300,329 - CCNA_00288 0.80 +0.1
300,356 + CCNA_00288 0.83 -1.0
300,364 - CCNA_00288 0.84 +0.2
300,373 - CCNA_00288 0.85 +2.2
300,373 - CCNA_00288 0.85 +0.5
300,387 + CCNA_00288 0.86 -0.7
300,387 + CCNA_00288 0.86 -0.5
300,387 + CCNA_00288 0.86 -1.7
300,395 - CCNA_00288 0.87 +0.5
300,406 - CCNA_00288 0.88 -1.9
300,416 - CCNA_00288 0.89 -0.5
300,421 + CCNA_00288 0.89 +1.1
300,422 + CCNA_00288 0.89 +1.0
300,429 - CCNA_00288 0.90 -0.5
300,429 - CCNA_00288 0.90 -0.6
300,440 - -0.5
300,499 + -0.8
300,572 + +2.3
300,599 - CCNA_00289 0.20 +1.1
300,599 - CCNA_00289 0.20 +0.3
300,622 + CCNA_00289 0.29 -0.4
300,660 + CCNA_00289 0.45 -0.7
300,711 + CCNA_00289 0.65 -1.0
300,712 + CCNA_00289 0.65 -0.8
300,716 + CCNA_00289 0.67 -1.4
300,720 - CCNA_00289 0.69 +0.7
300,720 - CCNA_00289 0.69 -0.9
300,735 - CCNA_00289 0.75 +0.5
300,746 + CCNA_00289 0.79 +1.1
300,754 - CCNA_00289 0.82 -0.5
300,754 - CCNA_00289 0.82 -1.0
300,754 - CCNA_00289 0.82 -0.2
300,754 - CCNA_00289 0.82 -0.9
300,754 - CCNA_00289 0.82 +0.5
300,806 - -2.2
301,004 + -1.7
301,046 + -0.3
301,046 + +0.3
301,046 + -0.5
301,046 + +1.2
301,046 + -0.8
301,054 - +3.6
301,054 - +3.7
301,054 - +3.5
301,054 - +3.7
301,075 - +3.6
301,117 + -1.7
301,143 + +0.7
301,143 + +0.9
301,151 - +3.1
301,151 - +2.4
301,201 - +2.7
301,201 - +2.4
301,228 - +2.5
301,228 - +2.1
301,228 - +2.5
301,240 + -1.2
301,248 - +3.0
301,248 - +2.6
301,302 - +3.0
301,303 - +3.1
301,303 - +2.6
301,333 + -0.6
301,420 - CCNA_00290 0.11 +2.5
301,434 - CCNA_00290 0.12 +3.2
301,436 - CCNA_00290 0.12 +2.3
301,499 + CCNA_00290 0.14 -0.6
301,535 - CCNA_00290 0.15 +2.0
301,540 + CCNA_00290 0.15 -0.5
301,618 + CCNA_00290 0.17 -0.5
301,618 + CCNA_00290 0.17 +0.6
301,626 - CCNA_00290 0.18 +3.0
301,626 - CCNA_00290 0.18 +2.5
301,626 - CCNA_00290 0.18 +2.9
301,673 + CCNA_00290 0.19 +0.0
301,678 + CCNA_00290 0.19 -0.4
301,686 - CCNA_00290 0.20 +3.0
301,694 + CCNA_00290 0.20 +0.4
301,706 + CCNA_00290 0.20 -0.6
301,752 - CCNA_00290 0.22 +2.8
301,758 - CCNA_00290 0.22 +2.8
301,764 - CCNA_00290 0.22 +2.4
301,765 - CCNA_00290 0.22 +3.7
301,769 - CCNA_00290 0.22 +2.5

Or see this region's nucleotide sequence